Pregenerated sensors for OLFR1444 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046272Ensembl transcript IDs: ENSMUST00000059675.4, ENSMUST00000213606.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGAGACATTGCCTCGAAAAAGTTTTGGAGAACAATACTCAAAGTTaGCCTCTGGCCAGCAAATGCATATGCACAGGCATATGCACTCCC | + |
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Preference number: 1 (lower is better) Translates to: ERHCLEKVLENNTQS*PLASKCICTGICTP Trigger: GGGAGTGCATATGCCTGTGCATATGCATTTGCTGGCCAGAGGTCAACTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGCAATGTCTCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR CCA 90 bp | ATTGCCTCGAAAAAGTTTTGGAGAACAATACTCAAAGTTGACCTCTaGCCAGCAAATGCATATGCACAGGCATATGCACTCCCACACACG | + |
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Preference number: 1 (lower is better) Translates to: IASKKFWRTILKVDL*PANAYAQAYALPHT Trigger: CGTGTGTGGGAGTGCATATGCCTGTGCATATGCATTTGCTGGCCAGAGGTCAACTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGCAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR CCA 90 bp | TGGTGGGTTCTATGTTCAATGAGAGACATTGCCTCGAAAAAGTTTTaGAGAACAATACTCAAAGTTGACCTCTGGCCAGCAAATGCATAT | + |
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Preference number: 1 (lower is better) Translates to: WWVLCSMRDIASKKF*RTILKVDLWPANAY Trigger: ATATGCATTTGCTGGCCAGAGGTCAACTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGCAATGTCTCTCATTGAACATAGAACCCACCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR TCA 90 bp | GCAGATCCTGAGCTTACTATCCTATTTGGTGGGTTCTATGTTCAATaGGAGACATTGCCTCGAAAAAGTTTTGGAGAACAATACTCAAAG | + |
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Preference number: 1 (lower is better) Translates to: ADPELTILFGGFYVQ*ETLPRKSFGEQYSK Trigger: CTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGCAATGTCTCTCATTGAACATAGAACCCACCAAATAGGATAGTAAGCTCAGGATCTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR-3UTR GCA 90 bp | AAGAATGAAGACTTGAGTTCAGATTTCCAGTACCCACATAAAAGATCAGCAAGAATATGCACAGGCATATaGACTCCCACACACGTATGT | + |
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Preference number: 2 (lower is better) Translates to: KNEDLSSDFQYPHKRSARICTGI*TPTHVC Trigger: ACATACGTGTGTGGGAGTGCATATGCCTGTGCATAT...TCTTGCTGATCTTTTATGTGGGTACTGGAAATCTGAACTCAAGTCTTCATTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR TCA 72 bp | TGCCTCGAAAAAGTTTTGGAGAACAATACTCAAAGTTaGCCTCTGGCCAGCAAATGCATATGCACAGGCATA | + |
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Preference number: 3 (lower is better) Translates to: CLEKVLENNTQS*PLASKCICTGI Trigger: TATGCCTGTGCATATGCATTTGCTGGCCAGAGGTCAACTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR CCA 72 bp | AAAAAGTTTTGGAGAACAATACTCAAAGTTGACCTCTaGCCAGCAAATGCATATGCACAGGCATATGCACTC | + |
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Preference number: 3 (lower is better) Translates to: KKFWRTILKVDL*PANAYAQAYAL Trigger: GAGTGCATATGCCTGTGCATATGCATTTGCTGGCCAGAGGTCAACTTTGAGTATTGTTCTCCAAAACTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR CCA 72 bp | CTATGTTCAATGAGAGACATTGCCTCGAAAAAGTTTTaGAGAACAATACTCAAAGTTGACCTCTGGCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: LCSMRDIASKKF*RTILKVDLWPA Trigger: TGCTGGCCAGAGGTCAACTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGCAATGTCTCTCATTGAACATAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR-3UTR CAA 90 bp | AAGAATGAAGACTTGAGTTCAGATTTCCAGTACCCACATAAAAGATCAGCAAGAAAATGCCCACTATTCTaGGGGAAGGTGAAACTGAAA | + |
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Preference number: 3 (lower is better) Translates to: KNEDLSSDFQYPHKRSARKCPLF*GKVKLK Trigger: TTTCAGTTTCACCTTCCCCAAGAATAGTGGGCATTT...TCTTGCTGATCTTTTATGTGGGTACTGGAAATCTGAACTCAAGTCTTCATTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR TCA 72 bp | GAGCTTACTATCCTATTTGGTGGGTTCTATGTTCAATaGGAGACATTGCCTCGAAAAAGTTTTGGAGAACAA | + |
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Preference number: 3 (lower is better) Translates to: ELTILFGGFYVQ*ETLPRKSFGEQ Trigger: TTGTTCTCCAAAACTTTTTCGAGGCAATGTCTCTCATTGAACATAGAACCCACCAAATAGGATAGTAAGCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR GCA 72 bp | TCCTATTTGGTGGGTTCTATGTTCAATGAGAGACATTaGCTCGAAAAAGTTTTGGAGAACAATACTCAAAGT | + |
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Preference number: 3 (lower is better) Translates to: SYLVGSMFNERH*LEKVLENNTQS Trigger: ACTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGCAATGTCTCTCATTGAACATAGAACCCACCAAATAGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| 3UTR-3UTR CAA 90 bp | AAGAATGAAGACTTGAGTTCAGATTTCCAGTACCCACATAAAAGATCAGCAAGAAGCTTACTATCCTATTaGGTGGGTTCTATGTTCAAT | + |
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Preference number: 3 (lower is better) Translates to: KNEDLSSDFQYPHKRSARSLLSY*VGSMFN Trigger: ATTGAACATAGAACCCACCAAATAGGATAGTAAGCT...TCTTGCTGATCTTTTATGTGGGTACTGGAAATCTGAACTCAAGTCTTCATTCTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| CDS-3UTR GCA 90 bp | GCCTCGAAAAAGTTTTGGAGAACAATACTCAAAGTTGACCTCTGGCCAGCAAATGTGTGTGCTGGAGCATaGAAGGGCCAGGAGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: ASKKFWRTILKVDLWPANVCAGA*KGQEWG Trigger: CCCCCACTCCTGGCCCTTGCATGCTCCAGCACACAC...ATTTGCTGGCCAGAGGTCAACTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| CDS-3UTR GCA 90 bp | TTCCTAGGAACTGAAATGCCCACTATTCTTGGGGAAGGTGAAACTGAAATTCTTGTGTGTGCTGGAGCATaGAAGGGCCAGGAGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: FLGTEMPTILGEGETEILVCAGA*KGQEWG Trigger: CCCCCACTCCTGGCCCTTGCATGCTCCAGCACACAC...AAGAATTTCAGTTTCACCTTCCCCAAGAATAGTGGGCATTTCAGTTCCTAGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | GAAGGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGAAGGAGGAGAGGAACCTaGAGATTGGGGTCATCTGTC | + |
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Preference number: 4 (lower is better) Translates to: EGETEILQTSKVALPRRRRRRGT*RLGSSV Trigger: GACAGATGACCCCAATCTTCAGGTTCCTCTCCTCCT...TCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | GAAGGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGAGATGACCTTGTTCCCTaGCTGAAGTGCAGCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: EGETEILQTSKVALPRRRDDLVP*LKCSHH Trigger: ATGGTGGCTGCACTTCAGTCAGGGAACAAGGTCATC...TCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | GAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCCCTTACGTGCAGCCACCATCTTaGGAGCTACAGCTGATGAGT | + |
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Preference number: 4 (lower is better) Translates to: EILQTSKVALPRRRSIPYVQPPS*ELQLMS Trigger: ACTCATCAGCTGTAGCTCCCAAGATGGTGGCTGCAC...GTAAGGGATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | GGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTGGCGGTCGTAAGCCATaGAGGCCAAAAGATAGCACT | + |
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Preference number: 4 (lower is better) Translates to: GETEILQTSKVALPRRRSGGRKP*RPKDST Trigger: AGTGCTATCTTTTGGCCTCCATGGCTTACGACCGCC...AGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | TTGACCTCTGGCCAGCAAATGCATATGCACAGGCATATGCACTCCCACACACGTAAGGTATCTGCAGCATaGATTGAGGCATTAAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LTSGQQMHMHRHMHSHTRKVSAA*IEALRK Trigger: CTTCCTTAATGCCTCAATCCATGCTGCAGATACCTT...ACGTGTGTGGGAGTGCATATGCCTGTGCATATGCATTTGCTGGCCAGAGGTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | GGGGAAGGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGTGCAAGGGCCAGGAGTaGGGGTATGTCACAGAAAAA | + |
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Preference number: 4 (lower is better) Translates to: GEGETEILQTSKVALPRRCKGQE*GYVTEK Trigger: TTTTTCTGTGACATACCCCCACTCCTGGCCCTTGCA...CCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACCTTCCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | GAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCGATGACCTTGTTCCCTaGCTGAAGTGCAGCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: ETEILQTSKVALPRRRSIDDLVP*LKCSHH Trigger: ATGGTGGCTGCACTTCAGTCAGGGAACAAGGTCATC...GATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | GAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCCCTTACATGGGAGTGTGGAGGTaGGAATCCGAGAAGATGATG | + |
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Preference number: 4 (lower is better) Translates to: EILQTSKVALPRRRSIPYMGVWR*ESEKMM Trigger: CATCATCTTCTCGGATTCCCACCTCCACACTCCCAT...GTAAGGGATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | GAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCGGCGGTCGTAAGCCATaGAGGCCAAAAGATAGCACT | + |
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Preference number: 4 (lower is better) Translates to: ETEILQTSKVALPRRRSIGGRKP*RPKDST Trigger: AGTGCTATCTTTTGGCCTCCATGGCTTACGACCGCC...GATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | TTCTTTTTCCTAGGAACTGAAATGCCCACTATTCTTGGGGAAGGTGAAACTGAAAGGAGGAGAGGAACCTaGAGATTGGGGTCATCTGTC | + |
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Preference number: 4 (lower is better) Translates to: FFFLGTEMPTILGEGETERRRGT*RLGSSV Trigger: GACAGATGACCCCAATCTTCAGGTTCCTCTCCTCCT...TTCAGTTTCACCTTCCCCAAGAATAGTGGGCATTTCAGTTCCTAGGAAAAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | TTCTTTTTCCTAGGAACTGAAATGCCCACTATTCTTGGGGAAGGTGAAACTGAAGTGCAGCCACCATCTTaGGAGCTACAGCTGATGAGT | + |
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Preference number: 4 (lower is better) Translates to: FFFLGTEMPTILGEGETEVQPPS*ELQLMS Trigger: ACTCATCAGCTGTAGCTCCCAAGATGGTGGCTGCAC...TTCAGTTTCACCTTCCCCAAGAATAGTGGGCATTTCAGTTCCTAGGAAAAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | ACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCCCTGATAGCACTCAACAGTaGCAAACCCCACGAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: TEILQTSKVALPRRRSIPDSTQQ*QTPRRR Trigger: TCTTCTTCGTGGGGTTTGCCACTGTTGAGTGCTATC...AGGGATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | GAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCTGCAAGGGCCAGGAGTaGGGGTATGTCACAGAAAAA | + |
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Preference number: 4 (lower is better) Translates to: ETEILQTSKVALPRRRSICKGQE*GYVTEK Trigger: TTTTTCTGTGACATACCCCCACTCCTGGCCCTTGCA...GATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | GAAGGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGAACCCATTATAGGAGATaGCCTTGTTCCCTGACTGAA | + |
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Preference number: 4 (lower is better) Translates to: EGETEILQTSKVALPRRRTHYRR*PCSLTE Trigger: TTCAGTCAGGGAACAAGGTCATCTCCTATAATGGGT...TCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | GGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTAGACAACCAATTTACTaGTGTGTGTGCTGGAGCATG | + |
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Preference number: 4 (lower is better) Translates to: GETEILQTSKVALPRRRSRQPIY*CVCWSM Trigger: CATGCTCCAGCACACACATCAGTAAATTGGTTGTCT...AGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | AAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCCGATAGCACTCAACAGTaGCAAACCCCACGAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: KLKFFRLQKLHCPGGDLSDSTQQ*QTPRRR Trigger: TCTTCTTCGTGGGGTTTGCCACTGTTGAGTGCTATC...GGATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| 3UTR CAA 72 bp | GGGAAGGTGAAACTGAAATTCTTCAGACTTCAAAAGTaGCATTGCCCAGGAGGCGATCTATCCCTTACTTCT | + |
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Preference number: 4 (lower is better) Translates to: GKVKLKFFRLQK*HCPGGDLSLTS Trigger: AGAAGTAAGGGATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACCTTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CCA 90 bp | GAAGGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGAAAGGTATCTGCAGCATaGATTGAGGCATTAAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: EGETEILQTSKVALPRRRKVSAA*IEALRK Trigger: CTTCCTTAATGCCTCAATCCATGCTGCAGATACCTT...TCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| 3UTR CAA 72 bp | TTGCCTCGAAAAAGTTTTGGAGAACAATACTCAAAGTaGACCTCTGGCCAGCAAATGCATATGCACAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: LPRKSFGEQYSK*TSGQQMHMHRH Trigger: ATGCCTGTGCATATGCATTTGCTGGCCAGAGGTCAACTTTGAGTATTGTTCTCCAAAACTTTTTCGAGGCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | TTCCTAGGAACTGAAATGCCCACTATTCTTGGGGAAGGTGAAACTGAAATTCTTAGACAACCAATTTACTaGTGTGTGTGCTGGAGCATG | + |
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Preference number: 4 (lower is better) Translates to: FLGTEMPTILGEGETEILRQPIY*CVCWSM Trigger: CATGCTCCAGCACACACATCAGTAAATTGGTTGTCT...AAGAATTTCAGTTTCACCTTCCCCAAGAATAGTGGGCATTTCAGTTCCTAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | GAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCCAGGGTAAAATCTGTTaGGTATTTTCCATAGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: ETEILQTSKVALPRRRSIQGKIC*VFSIEH Trigger: GTGCTCTATGGAAAATACTCAACAGATTTTACCCTG...GATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR GCA 90 bp | ACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCCCTGAAGAAAAATTGAGCTaGACACCCATTATAGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: TEILQTSKVALPRRRSIPEEKLS*TPIIGD Trigger: ATCTCCTATAATGGGTGTGCAGCTCAATTTTTCTTC...AGGGATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR GCA 90 bp | GGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTGAAGAAAAATTGAGCTaGACACCCATTATAGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: GETEILQTSKVALPRRRSEEKLS*TPIIGD Trigger: ATCTCCTATAATGGGTGTGCAGCTCAATTTTTCTTC...AGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR TCA 90 bp | TTCTTTTTCCTAGGAACTGAAATGCCCACTATTCTTGGGGAAGGTGAAACTGAACAGGGTAAAATCTGTTaGGTATTTTCCATAGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: FFFLGTEMPTILGEGETEQGKIC*VFSIEH Trigger: GTGCTCTATGGAAAATACTCAACAGATTTTACCCTG...TTCAGTTTCACCTTCCCCAAGAATAGTGGGCATTTCAGTTCCTAGGAAAAAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CAA 90 bp | GGTGAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTAGTGCAGCCACCATCTaGGGAGCTACAGCTGATGAG | + |
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Preference number: 5 (lower is better) Translates to: GETEILQTSKVALPRRRSSAATI*GATADE Trigger: CTCATCAGCTGTAGCTCCCAAGATGGTGGCTGCACT...AGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CAA 90 bp | GAAACTGAAATTCTTCAGACTTCAAAAGTTGCATTGCCCAGGAGGCGATCTATCCACGAAGAAGAAAAATaGAGCTGCACACCCATTATA | + |
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Preference number: 5 (lower is better) Translates to: ETEILQTSKVALPRRRSIHEEEK*SCTPII Trigger: TATAATGGGTGTGCAGCTCAATTTTTCTTCTTCGTG...GATAGATCGCCTCCTGGGCAATGCAACTTTTGAAGTCTGAAGAATTTCAGTTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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| CDS-3UTR CAA 90 bp | TTCTTTTTCCTAGGAACTGAAATGCCCACTATTCTTGGGGAAGGTGAAACTGAACACGAAGAAGAAAAATaGAGCTGCACACCCATTATA | + |
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Preference number: 5 (lower is better) Translates to: FFFLGTEMPTILGEGETEHEEEK*SCTPII Trigger: TATAATGGGTGTGCAGCTCAATTTTTCTTCTTCGTG...TTCAGTTTCACCTTCCCCAAGAATAGTGGGCATTTCAGTTCCTAGGAAAAAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000059675.4 ENSMUST00000213606.2 |
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