RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1440 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046650

Ensembl transcript IDs: ENSMUST00000213657.2, ENSMUST00000213894.2, ENSMUST00000216145.2, ENSMUST00000217062.3

Found 302 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCTCTTTTGAGGCTATGCTGGTGCCTGGCAAACACAGAAGTGAATaGTCACAATCAGCTATTGGATGCAACACAGGGCCTCCAATGGAG +
Preference number: 1 (lower is better)
Translates to: VSFEAMLVPGKHRSE*SQSAIGCNTGPPME
Trigger: CTCCATTGGAGGCCCTGTGTTGCATCCAATAGCTGATTGTGAGCATTCACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 90 bp AAACACCCATGGAAGGAGGTACAGAGACAAAGTTTAGAGATGAGATaGAAGGATGGACCATCTAGAGACTGCCGCACCTGGGGATCCATC +
Preference number: 1 (lower is better)
Translates to: KHPWKEVQRQSLEMR*KDGPSRDCRTWGSI
Trigger: GATGGATCCCCAGGTGCGGCAGTCTCTAGATGGTCCATCCTTTCATCTCATCTCTAAACTTTGTCTCTGTACCTCCTTCCATGGGTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 90 bp TCTCTGACTCTGCTAGCCCTACCCCATGGCCCTGCCAGTCTCATCTaGCTTTTACTATATCCTATTCTGTTTCCAGAAATCCAAGAGGCA +
Preference number: 1 (lower is better)
Translates to: SLTLLALPHGPASLI*LLLYPILFPEIQEA
Trigger: TGCCTCTTGGATTTCTGGAAACAGAATAGGATATAGTAAAAGTCAGATGAGACTGGCAGGGCCATGGGGTAGGGCTAGCAGAGTCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 90 bp AGAACTCAAAGTAGGAACATGGAACAGGAGCTGAAACAGAGGCCATaGCAGAGACTCTGTTCACTGTCTTGCTTCCCACAACTCAGTCTA +
Preference number: 1 (lower is better)
Translates to: RTQSRNMEQELKQRP*QRLCSLSCFPQLSL
Trigger: TAGACTGAGTTGTGGGAAGCAAGACAGTGAACAGAGTCTCTGCCATGGCCTCTGTTTCAGCTCCTGTTCCATGTTCCTACTTTGAGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 90 bp TCACCCCTAACACATAAGCCAGCCCTGGAATTTGATGGAGTAGCCTaGTTGCAACTCCACCACAGCATCAGAGTGTTTGAATCATATTAC +
Preference number: 1 (lower is better)
Translates to: SPLTHKPALEFDGVA*LQLHHSIRVFESYY
Trigger: GTAATATGATTCAAACACTCTGATGCTGTGGTGGAGTTGCAAGCAGGCTACTCCATCAAATTCCAGGGCTGGCTTATGTGTTAGGGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213894.2
3UTR GCA 90 bp GCTGAAAGGACCCTGATTGAACTGTCTCTTTTGAGGCTATGCTGGTaGCTGGCAAACACAGAAGTGAATGCTCACAATCAGCTATTGGAT +
Preference number: 1 (lower is better)
Translates to: AERTLIELSLLRLCW*LANTEVNAHNQLLD
Trigger: ATCCAATAGCTGATTGTGAGCATTCACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAATCAGGGTCCTTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 90 bp GATTTTGCTGAAAGGACCCTGATTGAACTGTCTCTTTTGAGGCTATaGTGGTGCCTGGCAAACACAGAAGTGAATGCTCACAATCAGCTA +
Preference number: 1 (lower is better)
Translates to: DFAERTLIELSLLRL*WCLANTEVNAHNQL
Trigger: TAGCTGATTGTGAGCATTCACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAATCAGGGTCCTTTCAGCAAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 90 bp GGATTCACATACCATAAGCCAGCCCTGGAATTTGATGGAGTAGCCTaGTTGCAACTCCACCACAGCATCAGAGTGTTTGAATCATATTAC +
Preference number: 1 (lower is better)
Translates to: GFTYHKPALEFDGVA*LQLHHSIRVFESYY
Trigger: GTAATATGATTCAAACACTCTGATGCTGTGGTGGAGTTGCAAGCAGGCTACTCCATCAAATTCCAGGGCTGGCTTATGGTATGTGAATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 90 bp TCTCTAGCTGCAAATGTAGCAGAAGATAGCCTAGTCAGCCATCATTaGGAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGT +
Preference number: 1 (lower is better)
Translates to: SLAANVAEDSLVSHH*EERPLSLANFICLS
Trigger: ACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTCCCAATGATGGCTGACTAGGCTATCTTCTGCTACATTTGCAGCTAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 90 bp TTTGCTGAAAGGACCCTGATTGAACTGTCTCTTTTGAGGCTATGCTaGTGCCTGGCAAACACAGAAGTGAATGCTCACAATCAGCTATTG +
Preference number: 1 (lower is better)
Translates to: FAERTLIELSLLRLC*CLANTEVNAHNQLL
Trigger: CAATAGCTGATTGTGAGCATTCACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAATCAGGGTCCTTTCAGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 90 bp AGCATTGATAGTGTAACCACCACTGTAGTAAGGAATAATGACACATaGGGAAGGGTTTTCCTCCTGATCTGTTGTGACCTATGTTTGAGC +
Preference number: 1 (lower is better)
Translates to: SIDSVTTTVVRNNDT*GRVFLLICCDLCLS
Trigger: GCTCAAACATAGGTCACAACAGATCAGGAGGAAAACCCTTCCCCATGTGTCATTATTCCTTACTACAGTGGTGGTTACACTATCAATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 90 bp TTGGAGAGGAGAGTGTTTATTCAACTTACATCTTGTAGTCAGGCATaGAGGGAAGTTGTAGCTGGCATTTGCTACTTTGTGGGTTCTTCT +
Preference number: 1 (lower is better)
Translates to: LERRVFIQLTSCSQA*REVVAGICYFVGSS
Trigger: AGAAGAACCCACAAAGTAGCAAATGCCAGCTACAACTTCCCTTCATGCCTGACTACAAGATGTAAGTTGAATAAACACTCTCCTCTCCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 90 bp GGGTATCATCCTGAGCGAGGTAACCCAATCACAAAAGAACTCACATaGTATGTACTCACTGATAAGTGGATATTAGCCCAGAAATTTAGA +
Preference number: 1 (lower is better)
Translates to: GYHPERGNPITKELT*YVLTDKWILAQKFR
Trigger: TCTAAATTTCTGGGCTAATATCCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGATTGGGTTACCTCGCTCAGGATGATACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 90 bp GATTGCTACTTCAAAGAAATTAGAAACTGCTCTGTGGTGCCACTTTaGTATAGGAGAGGAACCAATTTTAAGACTAAAAGAAGACAGGAC +
Preference number: 1 (lower is better)
Translates to: DCYFKEIRNCSVVPL*YRRGTNFKTKRRQD
Trigger: GTCCTGTCTTCTTTTAGTCTTAAAATTGGTTCCTCTCCTATACCAAAGTGGCACCACAGAGCAGTTTCTAATTTCTTTGAAGTAGCAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 90 bp TCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGTaGAGGTATATCTTCATATATTCAATTGTTAATTCTCTACAGCAG +
Preference number: 1 (lower is better)
Translates to: SRCLPPYQIVLGYLV*RYIFIYSIVNSLQQ
Trigger: CTGCTGTAGAGAATTAACAATTGAATATATGAAGATATACCTTCACACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 90 bp TTCTTCACATTAAAGATAGAACCCAGATGTCCCTCAACAGAGGAATaGATACAGAAAAATGTGGTATATTTACACAATGGAGTACTACTC +
Preference number: 1 (lower is better)
Translates to: FFTLKIEPRCPSTEE*IQKNVVYLHNGVLL
Trigger: GAGTAGTACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTATCTTTAATGTGAAGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACAGAAGTGGGAGTGGGTaGGTAGGGGAGTGCGGGGGC +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNRSGSG*VGECGG
Trigger: GCCCCCGCACTCCCCTACCCACCCACTCCCACTTCT...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGAGAAGTGGGAGTGGGTaGGTAGGGGAGTGCGGGGGC +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMRSGSG*VGECGG
Trigger: GCCCCCGCACTCCCCTACCCACCCACTCCCACTTCT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACACCAGGGCCAAGAAGTaGGAGTGGGTGGGTAGGGGA +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNTRAKK*EWVGRG
Trigger: TCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGT...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGCCATAACACTGAAGAAAATGTGGCTTTCCCGCACAGTTCTCTCAATAAGCCCAGAAGTGGGAGTGGGTaGGTAGGGGAGTGCGGGGGC +
Preference number: 2 (lower is better)
Translates to: SHNTEENVAFPHSSLNKPRSGSG*VGECGG
Trigger: GCCCCCGCACTCCCCTACCCACCCACTCCCACTTCT...GGGCTTATTGAGAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGTTATGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTGCTAGCCCTACCCCATaGCCCTGCCAGTCTCATCTG +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCASPTP*PCQSHL
Trigger: CAGATGAGACTGGCAGGGCCATGGGGTAGGGCTAGC...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTACTGAGATATGGTGACTaGGGAGCAGTGTTGGCCTTG +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELLRYGD*GAVLAL
Trigger: CAAGGCCAACACTGCTCCTCAGTCACCATATCTCAG...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGGCCAGCCCTGGAATTTaGTGGAGTAGCCTGCTTGCA +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMASPGI*WSSLLA
Trigger: TGCAAGCAGGCTACTCCATCAAATTCCAGGGCTGGC...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTATTGAACTGTCTCTTTTaGGGCTATGCTGGTGCCTGG +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELLNCLF*GYAGAW
Trigger: CCAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAA...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTACTAGTCAGCCATCATTaGGAAGAGAGGCCCCTTAGT +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELLVSHH*EERPLS
Trigger: ACTAAGGGGCCTCTCTTCCCAATGATGGCTGACTAG...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGCAGAGAGAGGGAGACTaGGCAAAAGGCAGAAGTGGG +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMQREGD*AKGRSG
Trigger: CCCACTTCTGCCTTTTGCCCAGTCTCCCTCTCTCTG...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACTCTTGTAGTCAGGCATaGAGGGAAGTTGTAGCTGGC +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNSCSQA*REVVAG
Trigger: GCCAGCTACAACTTCCCTTCATGCCTGACTACAAGA...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCCCTACCCCATGGCCCTaGCAGTCTCATCTGACTTTT +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFPTPWP*QSHLTF
Trigger: AAAAGTCAGATGAGACTGGCAGGGCCATGGGGTAGG...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCACCAGGGCCAAGAAGTaGGAGTGGGTGGGTAGGGGA +
Preference number: 2 (lower is better)
Translates to: CKTHETQEELKEWSLWPFTRAKK*EWVGRG
Trigger: TCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGT...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTACTTTTGAGGCTATGCTaGTGCCTGGCAAACACAGAA +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELLLRLC*CLANTE
Trigger: TTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAG...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAGGTTCTCAGATTTTGTaGATTGTAACCCACACTGGG +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELGSQIL*IVTHTG
Trigger: CCCAGTGTGGGTTACAATTCACAAAATCTGAGAACC...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTAGAAGGCAGAACTTCTaGACAGAGAGAGGGAGACTG +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCRRQNF*TERGRL
Trigger: CAGTCTCCCTCTCTCTGTTCAGAAGTTCTGCCTTCT...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CTGTTCTTCCCAGTTTCCAGCCCAGCCCCTTTAAATGTATCTCCTGGCCAAAAAACATGGAACAGGAGCTaGAACAGAGGCCATGGCAGA +
Preference number: 2 (lower is better)
Translates to: LFFPVSSPAPLNVSPGQKTWNRS*NRGHGR
Trigger: TCTGCCATGGCCTCTGTTTCAGCTCCTGTTCCATGT...TTTTTGGCCAGGAGATACATTTAAAGGGGCTGGGCTGGAAACTGGGAAGAACAG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTTTGAGGCTATGCTGGTaGCTGGCAAACACAGAAGTG +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCLRLCW*LANTEV
Trigger: CACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAA...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACCAGATCTCAAGAGCTTaGTCTCAGACCAGTAACGTC +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNQISRA*SQTSNV
Trigger: GACGTTACTGGTCTGAGACCAAGCTCTTGAGATCTG...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCCCGGTTGACTATAACTaGGGATCCTTTGAAGGGTCC +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFPVDYN*GSFEGS
Trigger: GGACCCTTCAAAGGATCCCCAGTTATAGTCAACCGG...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 90 bp CGCCAGCAAGATTTTGCTGAAAGGACCCTGATTGAACTGTCTCTTTaGAGGCTATGCTGGTGCCTGGCAAACACAGAAGTGAATGCTCAC +
Preference number: 2 (lower is better)
Translates to: RQQDFAERTLIELSL*RLCWCLANTEVNAH
Trigger: GTGAGCATTCACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAATCAGGGTCCTTTCAGCAAAATCTTGCTGGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CTGTTCTTCCCAGTTTCCAGCCCAGCCCCTTTAAATGTATCTCCTGGCCAAAAATCTTGTAGTCAGGCATaGAGGGAAGTTGTAGCTGGC +
Preference number: 2 (lower is better)
Translates to: LFFPVSSPAPLNVSPGQKSCSQA*REVVAG
Trigger: GCCAGCTACAACTTCCCTTCATGCCTGACTACAAGA...TTTTTGGCCAGGAGATACATTTAAAGGGGCTGGGCTGGAAACTGGGAAGAACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACGGTTCTCAGATTTTGTaGATTGTAACCCACACTGGG +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNGSQIL*IVTHTG
Trigger: CCCAGTGTGGGTTACAATTCACAAAATCTGAGAACC...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTATGGCAAACACAGAAGTaGATGCTCACAATCAGCTAT +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELWQTQK*MLTISY
Trigger: ATAGCTGATTGTGAGCATTCACTTCTGTGTTTGCCA...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGTCAGAACAGCTGAGTTaGACCAACCAGCCAGAATTC +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMSEQLS*TNQPEF
Trigger: GAATTCTGGCTGGTTGGTTCAACTCAGCTGTTCTGA...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCCTGAGATATGGTGACTaGGGAGCAGTGTTGGCCTTG +
Preference number: 2 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLLRYGD*GAVLAL
Trigger: CAAGGCCAACACTGCTCCTCAGTCACCATATCTCAG...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGAGCACTAACTTCTCCTaGAGAAGAACCACAGTTCCC +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMSTNFS*RRTTVP
Trigger: GGGAACTGTGGTTCTTCTGCAGGAGAAGTTAGTGCT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTACATCAAGCTGGACTTTaGTATGCATACTTTGGTCTG +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELHQAGL*YAYFGL
Trigger: CAGACCAAAGTATGCATACCAAAGTCCAGCTTGATG...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTCTTTTGAGGCTATGCTaGTGCCTGGCAAACACAGAA +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCLLRLC*CLANTE
Trigger: TTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAG...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACGCTAGCCCTACCCCATaGCCCTGCCAGTCTCATCTG +
Preference number: 2 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDASPTP*PCQSHL
Trigger: CAGATGAGACTGGCAGGGCCATGGGGTAGGGCTAGC...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGCCATAACACTGAAGAAAATGTGGCTTTCCCGCACAGTTCTCTCAATAAGCCCTCTTGTAGTCAGGCATaGAGGGAAGTTGTAGCTGGC +
Preference number: 2 (lower is better)
Translates to: SHNTEENVAFPHSSLNKPSCSQA*REVVAG
Trigger: GCCAGCTACAACTTCCCTTCATGCCTGACTACAAGA...GGGCTTATTGAGAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGTTATGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTACAGATAGGACAGCAATaGCAGAAACAAAGACATGAT +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELQIGQQ*QKQRHD
Trigger: ATCATGTCTTTGTTTCTGTCATTGCTGTCCTATCTG...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGTCTTCTGGAAGAAACTaGGATCAGCTGAGATTCCTG +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMSSGRN*DQLRFL
Trigger: CAGGAATCTCAGCTGATCTCAGTTTCTTCCAGAAGA...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAATTTTCTGGGATACATaGACAAATATCCACTCACCC +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELIFWDT*TNIHSP
Trigger: GGGTGAGTGGATATTTGTTCATGTATCCCAGAAAAT...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCGAAGGGTTTTCCTCCTaGTCTGTTGTGACCTATGTT +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFEGFSS*SVVTYV
Trigger: AACATAGGTCACAACAGATCAGGAGGAAAACCCTTC...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGAGAAGGCAGAACTTCTaGACAGAGAGAGGGAGACTG +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVRRQNF*TERGRL
Trigger: CAGTCTCCCTCTCTCTGTTCAGAAGTTCTGCCTTCT...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTTTGAGGCTATGCTGGTaGCTGGCAAACACAGAAGTG +
Preference number: 2 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVLRLCW*LANTEV
Trigger: CACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAA...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCCCCCTTATCCTCAGATaGTGGATCTCATTCATCAAG +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFPLILR*WISFIK
Trigger: CTTGATGAATGAGATCCACCATCTGAGGATAAGGGG...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGACACTGAAGAAAATGTaGCTTTCCCGCACAGTTCTC +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMTLKKM*LSRTVL
Trigger: GAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTCCAGTTCTTTTCTCTaGCTCACTCTAGCTTGTGTC +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFSSSFL*LTLACV
Trigger: GACACAAGCTAGAGTGAGCCAGAGAAAAGAACTGGA...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGCCGGTTGACTATAACTaGGGATCCTTTGAAGGGTCC +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVPVDYN*GSFEGS
Trigger: GGACCCTTCAAAGGATCCCCAGTTATAGTCAACCGG...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGGCTAGCCCTACCCCATaGCCCTGCCAGTCTCATCTG +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMEASPTP*PCQSHL
Trigger: CAGATGAGACTGGCAGGGCCATGGGGTAGGGCTAGC...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGCAGCTCAGCTTTTCCTaGCTCAAATGTCTCCAAACT +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMQLSFS*LKCLQT
Trigger: AGTTTGGAGACATTTGAGCCAGGAAAAGCTGAGCTG...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCCAGCATCAGAGTGTTTaGATCATATTACATGCCCTG +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFQHQSV*IILHAL
Trigger: CAGGGCATGTAATATGATTCAAACACTCTGATGCTG...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGCAGCATCAGAGTGTTTaGATCATATTACATGCCCTG +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMQHQSV*IILHAL
Trigger: CAGGGCATGTAATATGATTCAAACACTCTGATGCTG...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CCCTTCTCCCAGTTTTTCCAACACTATCAACTCCTCACTATAACAACTGTTCTAGCCAGCCCTGGAATTTaGTGGAGTAGCCTGCTTGCA +
Preference number: 2 (lower is better)
Translates to: PFSQFFQHYQLLTITTVLASPGI*WSSLLA
Trigger: TGCAAGCAGGCTACTCCATCAAATTCCAGGGCTGGC...TAGAACAGTTGTTATAGTGAGGAGTTGATAGTGTTGGAAAAACTGGGAGAAGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACATTTTCTGGGATACATaGACAAATATCCACTCACCC +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNIFWDT*TNIHSP
Trigger: GGGTGAGTGGATATTTGTTCATGTATCCCAGAAAAT...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAGCATCAAGGATTGTATaGACATTTTCTGGGATACAT +
Preference number: 2 (lower is better)
Translates to: GCNTGPPMEELEKVPKELASRIV*TFSGIH
Trigger: ATGTATCCCAGAAAATGTTCATACAATCCTTGATGC...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGAGCCCACTAGTCATTTaGGAGGCATCCAAATATTCA +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMSPLVI*EASKYS
Trigger: TGAATATTTGGATGCCTCTCAAATGACTAGTGGGCT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGGCAAACACAGAAGTaGATGCTCACAATCAGCTAT +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFWQTQK*MLTISY
Trigger: ATAGCTGATTGTGAGCATTCACTTCTGTGTTTGCCA...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTGGAGATTCAGCCAGCTaGCATGAAGGTGAACAAATG +
Preference number: 2 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVGDSAS*HEGEQM
Trigger: CATTTGTTCACCTTCATGTCAGCTGGCTGAATCTCC...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACGTTCTTCCTATGGGTTaGATGTTTTTCAACCTCAAG +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNVLPMG*MFFNLK
Trigger: CTTGAGGTTGAAAAACATGCAACCCATAGGAAGAAC...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGGTGTGTGTTTCAAGGTaGTTGCCACCCTATCAAATA +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMVCVSR*LPPYQI
Trigger: TATTTGATAGGGTGGCAAGCACCTTGAAACACACAC...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACAAGGGAAGTTGTAGCTaGCATTTGCTACTTTGTGGG +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHKGSCS*HLLLCG
Trigger: CCCACAAAGTAGCAAATGCCAGCTACAACTTCCCTT...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTCATCAAGCTGGACTTTaGTATGCATACTTTGGTCTG +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCHQAGL*YAYFGL
Trigger: CAGACCAAAGTATGCATACCAAAGTCCAGCTTGATG...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCCTTTTGAGGCTATGCTaGTGCCTGGCAAACACAGAA +
Preference number: 2 (lower is better)
Translates to: RTQRVVALALLRIGNKTPLLRLC*CLANTE
Trigger: TTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAG...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGCTTTTGAGGCTATGCTaGTGCCTGGCAAACACAGAA +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVLLRLC*CLANTE
Trigger: TTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAG...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCCAGATCTCAAGAGCTTaGTCTCAGACCAGTAACGTC +
Preference number: 2 (lower is better)
Translates to: RTQRVVALALLRIGNKTPQISRA*SQTSNV
Trigger: GACGTTACTGGTCTGAGACCAAGCTCTTGAGATCTG...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACTCCAGTTCTTTTCTCTaGCTCACTCTAGCTTGTGTC +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHSSSFL*LTLACV
Trigger: GACACAAGCTAGAGTGAGCCAGAGAAAAGAACTGGA...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGACAGAAACAAAGACATaGTCCCATCCATATGTAGTG +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMTETKT*SHPYVV
Trigger: CACTACATATGGATGGGATCATGTCTTTGTTTCTGT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCACAGAAACAAAGACATaGTCCCATCCATATGTAGTG +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFTETKT*SHPYVV
Trigger: CACTACATATGGATGGGATCATGTCTTTGTTTCTGT...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTCAGATAGGACAGCAATaGCAGAAACAAAGACATGAT +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCQIGQQ*QKQRHD
Trigger: ATCATGTCTTTGTTTCTGTCATTGCTGTCCTATCTG...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGTCTTCTGGAAGAAACTaGGATCAGCTGAGATTCCTG +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVSSGRN*DQLRFL
Trigger: CAGGAATCTCAGCTGATCTCAGTTTCTTCCAGAAGA...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGCCATAACACTGAAGAAAATGTGGCTTTCCCGCACAGTTCTCTCAATAAGCCCTCTTCTGGAAGAAACTaGGATCAGCTGAGATTCCTG +
Preference number: 2 (lower is better)
Translates to: SHNTEENVAFPHSSLNKPSSGRN*DQLRFL
Trigger: CAGGAATCTCAGCTGATCTCAGTTTCTTCCAGAAGA...GGGCTTATTGAGAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGTTATGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCAGAGGCTACTGTGGATaGCAGCATCTGCATGTCATT +
Preference number: 2 (lower is better)
Translates to: CKTHETQEELKEWSLWPFRGYCG*QHLHVI
Trigger: AATGACATGCAGATGCTGTCATCCACAGTAGCCTCT...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACTGGCAAACACAGAAGTaGATGCTCACAATCAGCTAT +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHWQTQK*MLTISY
Trigger: ATAGCTGATTGTGAGCATTCACTTCTGTGTTTGCCA...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGTCATCAGTAAGTCTCTaGGATGACTGGGAGAAAAGG +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVSSVSL*DDWEKR
Trigger: CCTTTTCTCCCAGTCATCTCAGAGACTTACTGATGA...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CCCTTCTCCCAGTTTTTCCAACACTATCAACTCCTCACTATAACAACTGTTCTACTGAGATATGGTGACTaGGGAGCAGTGTTGGCCTTG +
Preference number: 2 (lower is better)
Translates to: PFSQFFQHYQLLTITTVLLRYGD*GAVLAL
Trigger: CAAGGCCAACACTGCTCCTCAGTCACCATATCTCAG...TAGAACAGTTGTTATAGTGAGGAGTTGATAGTGTTGGAAAAACTGGGAGAAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACGTTGTAGCTGGCATTTaGTACTTTGTGGGTTCTTCT +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHVVAGI*YFVGSS
Trigger: AGAAGAACCCACAAAGTAGCAAATGCCAGCTACAAC...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCGTTCTTCCTATGGGTTaGATGTTTTTCAACCTCAAG +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFVLPMG*MFFNLK
Trigger: CTTGAGGTTGAAAAACATGCAACCCATAGGAAGAAC...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTTGTTCTTCCTCACTTaGCTAAGGCAATCTAGGATT +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFLFFLT*LRQSRI
Trigger: AATCCTAGATTGCCTTAGGCAAGTGAGGAAGAACAA...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGCCATAACACTGAAGAAAATGTGGCTTTCCCGCACAGTTCTCTCAATAAGCCCAAGGGAAGTTGTAGCTaGCATTTGCTACTTTGTGGG +
Preference number: 2 (lower is better)
Translates to: SHNTEENVAFPHSSLNKPKGSCS*HLLLCG
Trigger: CCCACAAAGTAGCAAATGCCAGCTACAACTTCCCTT...GGGCTTATTGAGAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGTTATGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCGAAAGCCCAGTCTTCTaGAAGAAACTGAGATCAGCT +
Preference number: 2 (lower is better)
Translates to: RTQRVVALALLRIGNKTPESPVF*KKLRSA
Trigger: AGCTGATCTCAGTTTCTTCCAGAAGACTGGGCTTTC...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCGAAAGCCCAGTCTTCTaGAAGAAACTGAGATCAGCT +
Preference number: 2 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLESPVF*KKLRSA
Trigger: AGCTGATCTCAGTTTCTTCCAGAAGACTGGGCTTTC...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTGGGAATTTCCTCCAGTaGATAGTCCACTTTCAAATA +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCGNFLQ*IVHFQI
Trigger: TATTTGAAAGTGGACTATCCACTGGAGGAAATTCCC...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCCTTATCCTCAGATGGTaGATCTCATTCATCAAGAAG +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFLILRW*ISFIKK
Trigger: CTTCTTGATGAATGAGATCCACCATCTGAGGATAAG...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGCTTATCCTCAGATGGTaGATCTCATTCATCAAGAAG +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMLILRW*ISFIKK
Trigger: CTTCTTGATGAATGAGATCCACCATCTGAGGATAAG...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACATTCAGTTCTTCCTATaGGTTGCATGTTTTTCAACC +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNIQFFL*VACFST
Trigger: GGTTGAAAAACATGCAACCCATAGGAAGAACTGAAT...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTACACTGAAGAAAATGTaGCTTTCCCGCACAGTTCTC +
Preference number: 2 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVTLKKM*LSRTVL
Trigger: GAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGT...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGAACTGTGTTTTTGAGTaGTGTGTGTTTCAAGGTGCT +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMNCVFE*CVFQGA
Trigger: AGCACCTTGAAACACACACCACTCAAAAACACAGTT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCAACTGTGTTTTTGAGTaGTGTGTGTTTCAAGGTGCT +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFNCVFE*CVFQGA
Trigger: AGCACCTTGAAACACACACCACTCAAAAACACAGTT...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTTCCAGTTCTTTTCTCTaGCTCACTCTAGCTTGTGTC +
Preference number: 2 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVSSSFL*LTLACV
Trigger: GACACAAGCTAGAGTGAGCCAGAGAAAAGAACTGGA...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGCCATAACACTGAAGAAAATGTGGCTTTCCCGCACAGTTCTCTCAATAAGCCCCAGCTCAGCTTTTCCTaGCTCAAATGTCTCCAAACT +
Preference number: 2 (lower is better)
Translates to: SHNTEENVAFPHSSLNKPQLSFS*LKCLQT
Trigger: AGTTTGGAGACATTTGAGCCAGGAAAAGCTGAGCTG...GGGCTTATTGAGAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGTTATGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACATTTTCTGGGATACATaGACAAATATCCACTCACCC +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHIFWDT*TNIHSP
Trigger: GGGTGAGTGGATATTTGTTCATGTATCCCAGAAAAT...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTGCATCAAGGATTGTATaGACATTTTCTGGGATACAT +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCASRIV*TFSGIH
Trigger: ATGTATCCCAGAAAATGTTCATACAATCCTTGATGC...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACAAGAGCTTGAAACATTaGATTCTACAGGAAAGTTCA +
Preference number: 2 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNKSLKH*ILQESS
Trigger: TGAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTT...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCCTTGCAAACTTTATATaGCTCAGTACAGGGGAACAC +
Preference number: 2 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLLANFI*LSTGEH
Trigger: GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAG...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCCTTGCAAACTTTATATaGCTCAGTACAGGGGAACAC +
Preference number: 2 (lower is better)
Translates to: RTQRVVALALLRIGNKTPLANFI*LSTGEH
Trigger: GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAG...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCAAACACAGAAGTGAATaGTCACAATCAGCTATTGGA +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFKHRSE*SQSAIG
Trigger: TCCAATAGCTGATTGTGAGCATTCACTTCTGTGTTT...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACTTGAGGCTATGCTGGTaGCTGGCAAACACAGAAGTG +
Preference number: 2 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDLRLCW*LANTEV
Trigger: CACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAA...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGAGCTCATGCAGTCAGTaGAGTTCATTTTGTGAAATT +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMSSCSQ*SSFCEI
Trigger: AATTTCACAAAATGAACTGCACTGACTGCATGAGCT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCCATCAAGCTGGACTTTaGTATGCATACTTTGGTCTG +
Preference number: 2 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLHQAGL*YAYFGL
Trigger: CAGACCAAAGTATGCATACCAAAGTCCAGCTTGATG...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCCCCCTTATCCTCAGATaGTGGATCTCATTCATCAAG +
Preference number: 2 (lower is better)
Translates to: CKTHETQEELKEWSLWPFPLILR*WISFIK
Trigger: CTTGATGAATGAGATCCACCATCTGAGGATAAGGGG...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCGGAACAAAACACCCATaGAAGGAGGTACAGAGACAA +
Preference number: 2 (lower is better)
Translates to: CKTHETQEELKEWSLWPFGTKHP*KEVQRQ
Trigger: TTGTCTCTGTACCTCCTTCCATGGGTGTTTTGTTCC...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCTTAGAAACTGCTCTGTaGTGCCACTTTGGTATAGGA +
Preference number: 2 (lower is better)
Translates to: RTQRVVALALLRIGNKTPLETAL*CHFGIG
Trigger: TCCTATACCAAAGTGGCACCACAGAGCAGTTTCTAA...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGTTAGAAACTGCTCTGTaGTGCCACTTTGGTATAGGA +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVLETAL*CHFGIG
Trigger: TCCTATACCAAAGTGGCACCACAGAGCAGTTTCTAA...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGTGTTGGCCTTGTGTTTaGTACTATTTTCTTTGCCTT +
Preference number: 2 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMCWPCV*YYFLCL
Trigger: AAGGCAAAGAAAATAGTACCAAACACAAGGCCAACA...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CCCTTCTCCCAGTTTTTCCAACACTATCAACTCCTCACTATAACAACTGTTCTACCGGTTGACTATAACTaGGGATCCTTTGAAGGGTCC +
Preference number: 2 (lower is better)
Translates to: PFSQFFQHYQLLTITTVLPVDYN*GSFEGS
Trigger: GGACCCTTCAAAGGATCCCCAGTTATAGTCAACCGG...TAGAACAGTTGTTATAGTGAGGAGTTGATAGTGTTGGAAAAACTGGGAGAAGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCCAGCTCAGCTTTTCCTaGCTCAAATGTCTCCAAACT +
Preference number: 2 (lower is better)
Translates to: CKTHETQEELKEWSLWPFQLSFS*LKCLQT
Trigger: AGTTTGGAGACATTTGAGCCAGGAAAAGCTGAGCTG...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 90 bp ACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATaGGGAACAAAACACCCATGGAAGGAGGTACAGAGACAAAGTTTA +
Preference number: 2 (lower is better)
Translates to: TQEELKEWSLWPFLE*GTKHPWKEVQRQSL
Trigger: TAAACTTTGTCTCTGTACCTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGACAGAAACAAAGACATaGTCCCATCCATATGTAGTG +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVTETKT*SHPYVV
Trigger: CACTACATATGGATGGGATCATGTCTTTGTTTCTGT...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCGCAAGGAAATGTAATTaGTGCCACAGTCAACTTACA +
Preference number: 2 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLARKCN*CHSQLT
Trigger: TGTAAGTTGACTGTGGCATCAATTACATTTCCTTGC...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTTGAACTGTCTCTTTTaGGGCTATGCTGGTGCCTGG +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMELNCLF*GYAGAW
Trigger: CCAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAA...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACTCATATTACATGCCCTaGAGAATACAGAAACTTCCA +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHSYYMP*RIQKLP
Trigger: TGGAAGTTTCTGTATTCTGCAGGGCATGTAATATGA...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTAAGAGCTTGAAACATTaGATTCTACAGGAAAGTTCA +
Preference number: 2 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCKSLKH*ILQESS
Trigger: TGAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTT...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTAAAGAAATTAGAAACTaGTCTGTGGTGCCACTTTGG +
Preference number: 2 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVKEIRN*SVVPLW
Trigger: CCAAAGTGGCACCACAGAGCAGTTTCTAATTTCTTT...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACGTTCAAAATAGCTTTTaGAAGTCCCTGAAACCAATC +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHVQNSF*KSLKPI
Trigger: GATTGGTTTCAGGGACTTCCAAAAGCTATTTTGAAC...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCCTTATCCTCAGATGGTaGATCTCATTCATCAAGAAG +
Preference number: 2 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLLILRW*ISFIKK
Trigger: CTTCTTGATGAATGAGATCCACCATCTGAGGATAAG...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACATTCAGTTCTTCCTATaGGTTGCATGTTTTTCAACC +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHIQFFL*VACFST
Trigger: GGTTGAAAAACATGCAACCCATAGGAAGAACTGAAT...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGCTAGTCAGCCATCATTaGGAAGAGAGGCCCCTTAGT +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMELVSHH*EERPLS
Trigger: ACTAAGGGGCCTCTCTTCCCAATGATGGCTGACTAG...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGCTAGTCAGCCATCATTaGGAAGAGAGGCCCCTTAGT +
Preference number: 2 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKLVSHH*EERPLS
Trigger: ACTAAGGGGCCTCTCTTCCCAATGATGGCTGACTAG...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGCCCTCAACAGAGGAATaGATACAGAAAAATGTGGTA +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVPSTEE*IQKNVV
Trigger: TACCACATTTTTCTGTATCCATTCCTCTGTTGAGGG...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGTGTAGCCCTTGTCTCTaGAATTTTCCATCTATCTTC +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVCSPCL*NFPSIF
Trigger: GAAGATAGATGGAAAATTCCAGAGACAAGGGCTACA...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCTGTAGCCCTTGTCTCTaGAATTTTCCATCTATCTTC +
Preference number: 2 (lower is better)
Translates to: RTQRVVALALLRIGNKTPCSPCL*NFPSIF
Trigger: GAAGATAGATGGAAAATTCCAGAGACAAGGGCTACA...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCATGTTGGCGTGGTCTTaGTATTGTTATTTATCGTAT +
Preference number: 2 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFMLAWS*YCYLSY
Trigger: ATACGATAAATAACAATACCAAGACCACGCCAACAT...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGAACTGTGTTTTTGAGTaGTGTGTGTTTCAAGGTGCT +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVNCVFE*CVFQGA
Trigger: AGCACCTTGAAACACACACCACTCAAAAACACAGTT...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CTGTTCTTCCCAGTTTCCAGCCCAGCCCCTTTAAATGTATCTCCTGGCCAAAAATGTTGGCCTTGTGTTTaGTACTATTTTCTTTGCCTT +
Preference number: 2 (lower is better)
Translates to: LFFPVSSPAPLNVSPGQKCWPCV*YYFLCL
Trigger: AAGGCAAAGAAAATAGTACCAAACACAAGGCCAACA...TTTTTGGCCAGGAGATACATTTAAAGGGGCTGGGCTGGAAACTGGGAAGAACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp TGTCATAGAGTTTCTGTTGTGATAAAACACCATCACCAAAAGTATCTTGGAGAGTCTTGTAGTCAGGCATaGAGGGAAGTTGTAGCTGGC +
Preference number: 2 (lower is better)
Translates to: CHRVSVVIKHHHQKYLGESCSQA*REVVAG
Trigger: GCCAGCTACAACTTCCCTTCATGCCTGACTACAAGA...CTCTCCAAGATACTTTTGGTGATGGTGTTTTATCACAACAGAAACTCTATGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGAGGAGAGTGTTTATTCAACTTACATCTTGTAGTCAGGCATGAAGGGAAGTTGGGTTCTCAGATTTTGTaGATTGTAACCCACACTGGG +
Preference number: 2 (lower is better)
Translates to: RGECLFNLHLVVRHEGKLGSQIL*IVTHTG
Trigger: CCCAGTGTGGGTTACAATTCACAAAATCTGAGAACC...CAACTTCCCTTCATGCCTGACTACAAGATGTAAGTTGAATAAACACTCTCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGAGAGGCTACTGTGGATaGCAGCATCTGCATGTCATT +
Preference number: 2 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKRGYCG*QHLHVI
Trigger: AATGACATGCAGATGCTGTCATCCACAGTAGCCTCT...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGTCATATTACATGCCCTaGAGAATACAGAAACTTCCA +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVSYYMP*RIQKLP
Trigger: TGGAAGTTTCTGTATTCTGCAGGGCATGTAATATGA...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCTCATATTACATGCCCTaGAGAATACAGAAACTTCCA +
Preference number: 2 (lower is better)
Translates to: RTQRVVALALLRIGNKTPSYYMP*RIQKLP
Trigger: TGGAAGTTTCTGTATTCTGCAGGGCATGTAATATGA...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp CTGTTCTTCCCAGTTTCCAGCCCAGCCCCTTTAAATGTATCTCCTGGCCAAAAATTGAATCATATTACATaGCCTGCAGAATACAGAAAC +
Preference number: 2 (lower is better)
Translates to: LFFPVSSPAPLNVSPGQKLNHIT*PAEYRN
Trigger: GTTTCTGTATTCTGCAGGGCATGTAATATGATTCAA...TTTTTGGCCAGGAGATACATTTAAAGGGGCTGGGCTGGAAACTGGGAAGAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGAAACACAGAAGTGAATaGTCACAATCAGCTATTGGA +
Preference number: 2 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVKHRSE*SQSAIG
Trigger: TCCAATAGCTGATTGTGAGCATTCACTTCTGTGTTT...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTTTGAGGCTATGCTGGTaGCTGGCAAACACAGAAGTG +
Preference number: 2 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSLRLCW*LANTEV
Trigger: CACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAA...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACAAGGGAAGTTGTAGCTaGCATTTGCTACTTTGTGGG +
Preference number: 2 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDKGSCS*HLLLCG
Trigger: CCCACAAAGTAGCAAATGCCAGCTACAACTTCCCTT...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCTCACCAAAAGTATCTTaGAGAGGAGAGTGTTTATTC +
Preference number: 2 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLSPKVS*RGECLF
Trigger: GAATAAACACTCTCCTCTCCAAGATACTTTTGGTGA...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGAGGAGAGTGTTTATTCAACTTACATCTTGTAGTCAGGCATGAAGGGAAGTTGGAAAGCCCAGTCTTCTaGAAGAAACTGAGATCAGCT +
Preference number: 2 (lower is better)
Translates to: RGECLFNLHLVVRHEGKLESPVF*KKLRSA
Trigger: AGCTGATCTCAGTTTCTTCCAGAAGACTGGGCTTTC...CAACTTCCCTTCATGCCTGACTACAAGATGTAAGTTGAATAAACACTCTCCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTGTTCAAAATAGCTTTTaGAAGTCCCTGAAACCAATC +
Preference number: 2 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVVQNSF*KSLKPI
Trigger: GATTGGTTTCAGGGACTTCCAAAAGCTATTTTGAAC...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACCCCCTTATCCTCAGATaGTGGATCTCATTCATCAAG +
Preference number: 2 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDPLILR*WISFIK
Trigger: CTTGATGAATGAGATCCACCATCTGAGGATAAGGGG...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGCCATAACACTGAAGAAAATGTGGCTTTCCCGCACAGTTCTCTCAATAAGCCCATTCAGTTCTTCCTATaGGTTGCATGTTTTTCAACC +
Preference number: 2 (lower is better)
Translates to: SHNTEENVAFPHSSLNKPIQFFL*VACFST
Trigger: GGTTGAAAAACATGCAACCCATAGGAAGAACTGAAT...GGGCTTATTGAGAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGTTATGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACGTACTCACTGATAAGTaGATATTAGCCCAGAAATTT +
Preference number: 2 (lower is better)
Translates to: EERPLSLANFICLSTGEHVLTDK*ILAQKF
Trigger: AAATTTCTGGGCTAATATCCACTTATCAGTGAGTAC...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACACACTGAAGAAAATGTaGCTTTCCCGCACAGTTCTC +
Preference number: 2 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDTLKKM*LSRTVL
Trigger: GAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGT...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGTCTTCTGGAAGAAACTaGGATCAGCTGAGATTCCTG +
Preference number: 2 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKSSGRN*DQLRFL
Trigger: CAGGAATCTCAGCTGATCTCAGTTTCTTCCAGAAGA...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGGAAGGGTTTTCCTCCTaGTCTGTTGTGACCTATGTT +
Preference number: 2 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKEGFSS*SVVTYV
Trigger: AACATAGGTCACAACAGATCAGGAGGAAAACCCTTC...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTAGAGGCTACTGTGGATaGCAGCATCTGCATGTCATT +
Preference number: 2 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSRGYCG*QHLHVI
Trigger: AATGACATGCAGATGCTGTCATCCACAGTAGCCTCT...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTAAGAGCTTGAAACATTaGATTCTACAGGAAAGTTCA +
Preference number: 2 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVKSLKH*ILQESS
Trigger: TGAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTT...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp AGAGGAGAGTGTTTATTCAACTTACATCTTGTAGTCAGGCATGAAGGGAAGTTGTTAGAAACTGCTCTGTaGTGCCACTTTGGTATAGGA +
Preference number: 2 (lower is better)
Translates to: RGECLFNLHLVVRHEGKLLETAL*CHFGIG
Trigger: TCCTATACCAAAGTGGCACCACAGAGCAGTTTCTAA...CAACTTCCCTTCATGCCTGACTACAAGATGTAAGTTGAATAAACACTCTCCTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGCAGCATCAGAGTGTTTaGATCATATTACATGCCCTG +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMEQHQSV*IILHAL
Trigger: CAGGGCATGTAATATGATTCAAACACTCTGATGCTG...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACGCAAGGAAATGTAATTaGTGCCACAGTCAACTTACA +
Preference number: 2 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDARKCN*CHSQLT
Trigger: TGTAAGTTGACTGTGGCATCAATTACATTTCCTTGC...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCAAGAGCTTGAAACATTaGATTCTACAGGAAAGTTCA +
Preference number: 2 (lower is better)
Translates to: CKTHETQEELKEWSLWPFKSLKH*ILQESS
Trigger: TGAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTT...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGCTTGCAAACTTTATATaGCTCAGTACAGGGGAACAC +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMELANFI*LSTGEH
Trigger: GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAG...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACAAAGAAATTAGAAACTaGTCTGTGGTGCCACTTTGG +
Preference number: 2 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDKEIRN*SVVPLW
Trigger: CCAAAGTGGCACCACAGAGCAGTTTCTAATTTCTTT...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp AGAGGAGAGTGTTTATTCAACTTACATCTTGTAGTCAGGCATGAAGGGAAGTTGAAAGAAATTAGAAACTaGTCTGTGGTGCCACTTTGG +
Preference number: 2 (lower is better)
Translates to: RGECLFNLHLVVRHEGKLKEIRN*SVVPLW
Trigger: CCAAAGTGGCACCACAGAGCAGTTTCTAATTTCTTT...CAACTTCCCTTCATGCCTGACTACAAGATGTAAGTTGAATAAACACTCTCCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGCATCAAGCTGGACTTTaGTATGCATACTTTGGTCTG +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMEHQAGL*YAYFGL
Trigger: CAGACCAAAGTATGCATACCAAAGTCCAGCTTGATG...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTCCCCTTATCCTCAGATaGTGGATCTCATTCATCAAG +
Preference number: 2 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSPLILR*WISFIK
Trigger: CTTGATGAATGAGATCCACCATCTGAGGATAAGGGG...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTGGAACAAAACACCCATaGAAGGAGGTACAGAGACAA +
Preference number: 2 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSGTKHP*KEVQRQ
Trigger: TTGTCTCTGTACCTCCTTCCATGGGTGTTTTGTTCC...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 90 bp TATCCACTCACCCAGTGTGTAGCAGTTTCACAAGAGCTTGAAACATaGCATTCTACAGGAAAGTTCATTTACTACAGTAAGGAAACAAGT +
Preference number: 2 (lower is better)
Translates to: YPLTQCVAVSQELET*HSTGKFIYYSKETS
Trigger: ACTTGTTTCCTTACTGTAGTAAATGAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTTGTGAAACTGCTACACACTGGGTGAGTGGATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 90 bp TATTTCTCCCTCACCCTCTCCCTTTTATTCAGTTCTTCCTATGGGTaGCATGTTTTTCAACCTCAAGAGGGTATATTTATCACTGATCAA +
Preference number: 2 (lower is better)
Translates to: YFSLTLSLLFSSSYG*HVFQPQEGIFITDQ
Trigger: TTGATCAGTGATAAATATACCCTCTTGAGGTTGAAAAACATGCAACCCATAGGAAGAACTGAATAAAAGGGAGAGGGTGAGGGAGAAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGCAGATAGGACAGCAATaGCAGAAACAAAGACATGAT +
Preference number: 2 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKQIGQQ*QKQRHD
Trigger: ATCATGTCTTTGTTTCTGTCATTGCTGTCCTATCTG...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGATTTTCTGGGATACATaGACAAATATCCACTCACCC +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMEIFWDT*TNIHSP
Trigger: GGGTGAGTGGATATTTGTTCATGTATCCCAGAAAAT...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGGCAAGGAAATGTAATTaGTGCCACAGTCAACTTACA +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMEARKCN*CHSQLT
Trigger: TGTAAGTTGACTGTGGCATCAATTACATTTCCTTGC...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTGTTGTAGCTGGCATTTaGTACTTTGTGGGTTCTTCT +
Preference number: 2 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSVVAGI*YFVGSS
Trigger: AGAAGAACCCACAAAGTAGCAAATGCCAGCTACAAC...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR TCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGGCATCAAGGATTGTATaGACATTTTCTGGGATACAT +
Preference number: 2 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKASRIV*TFSGIH
Trigger: ATGTATCCCAGAAAATGTTCATACAATCCTTGATGC...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR GCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTCATATTACATGCCCTaGAGAATACAGAAACTTCCA +
Preference number: 2 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMESYYMP*RIQKLP
Trigger: TGGAAGTTTCTGTATTCTGCAGGGCATGTAATATGA...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGTCACCAAAAGTATCTTaGAGAGGAGAGTGTTTATTC +
Preference number: 2 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKSPKVS*RGECLF
Trigger: GAATAAACACTCTCCTCTCCAAGATACTTTTGGTGA...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 90 bp GTTGGCGTGGTCTTGGTATTGTTATTTATCGTATTTTGTAAATATTaGTTCTTCCTCACTTGCCTAAGGCAATCTAGGATTGTATCTGAT +
Preference number: 2 (lower is better)
Translates to: VGVVLVLLFIVFCKY*FFLTCLRQSRIVSD
Trigger: ATCAGATACAATCCTAGATTGCCTTAGGCAAGTGAGGAAGAACAAATATTTACAAAATACGATAAATAACAATACCAAGACCACGCCAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTGTACTCACTGATAAGTaGATATTAGCCCAGAAATTT +
Preference number: 2 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSVLTDK*ILAQKF
Trigger: AAATTTCTGGGCTAATATCCACTTATCAGTGAGTAC...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAGATGGAGTAGCCTGCTaGCAACTCCACCACAGCATC +
Preference number: 3 (lower is better)
Translates to: GCNTGPPMEELEKVPKELDGVAC*QLHHSI
Trigger: GATGCTGTGGTGGAGTTGCAAGCAGGCTACTCCATC...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp CCAACTGCCTTCTCTGACTCTGCTAGCCCTACCCCATaGCCCTGCCAGTCTCATCTGACTTTTACTATATCC +
Preference number: 3 (lower is better)
Translates to: PTAFSDSASPTP*PCQSHLTFTIS
Trigger: GGATATAGTAAAAGTCAGATGAGACTGGCAGGGCCATGGGGTAGGGCTAGCAGAGTCAGAGAAGGCAGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACGATGGAGTAGCCTGCTaGCAACTCCACCACAGCATC +
Preference number: 3 (lower is better)
Translates to: EERPLSLANFICLSTGEHDGVAC*QLHHSI
Trigger: GATGCTGTGGTGGAGTTGCAAGCAGGCTACTCCATC...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAATTGAACTGTCTCTTTaGAGGCTATGCTGGTGCCTG +
Preference number: 3 (lower is better)
Translates to: GCNTGPPMEELEKVPKELIELSL*RLCWCL
Trigger: CAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAAT...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp TGGGAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATaGCTCAGTACAGGGGAACACCAGGGCCAAGAAGTG +
Preference number: 3 (lower is better)
Translates to: WEERPLSLANFI*LSTGEHQGQEV
Trigger: CACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp GCCTTCTCTGACTCTGCTAGCCCTACCCCATGGCCCTaGCAGTCTCATCTGACTTTTACTATATCCTATTCT +
Preference number: 3 (lower is better)
Translates to: AFSDSASPTPWP*QSHLTFTISYS
Trigger: AGAATAGGATATAGTAAAAGTCAGATGAGACTGGCAGGGCCATGGGGTAGGGCTAGCAGAGTCAGAGAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTACACTGGGGTGGGTGTaGGTGATACAACTCTCCTTG +
Preference number: 3 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVTLGWV*VIQLSL
Trigger: CAAGGAGAGTTGTATCACCAACACCCACCCCAGTGT...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTATTGAACTGTCTCTTTaGAGGCTATGCTGGTGCCTG +
Preference number: 3 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCIELSL*RLCWCL
Trigger: CAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAAT...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAGTGTTGGCCTTGTGTTaGGTACTATTTTCTTTGCCT +
Preference number: 3 (lower is better)
Translates to: GCNTGPPMEELEKVPKELVLALC*VLFSLP
Trigger: AGGCAAAGAAAATAGTACCAAACACAAGGCCAACAC...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp TGGAAGGAGGTACAGAGACAAAGTTTAGAGATGAGATaGAAGGATGGACCATCTAGAGACTGCCGCACCTGG +
Preference number: 3 (lower is better)
Translates to: WKEVQRQSLEMR*KDGPSRDCRTW
Trigger: CCAGGTGCGGCAGTCTCTAGATGGTCCATCCTTTCATCTCATCTCTAAACTTTGTCTCTGTACCTCCTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp ACACATAAGCCAGCCCTGGAATTTGATGGAGTAGCCTaGTTGCAACTCCACCACAGCATCAGAGTGTTTGAA +
Preference number: 3 (lower is better)
Translates to: THKPALEFDGVA*LQLHHSIRVFE
Trigger: TTCAAACACTCTGATGCTGTGGTGGAGTTGCAAGCAGGCTACTCCATCAAATTCCAGGGCTGGCTTATGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213894.2
3UTR GCA 72 bp TACCATAAGCCAGCCCTGGAATTTGATGGAGTAGCCTaGTTGCAACTCCACCACAGCATCAGAGTGTTTGAA +
Preference number: 3 (lower is better)
Translates to: YHKPALEFDGVA*LQLHHSIRVFE
Trigger: TTCAAACACTCTGATGCTGTGGTGGAGTTGCAAGCAGGCTACTCCATCAAATTCCAGGGCTGGCTTATGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCAGTTGTAGCTGGCATTaGCTACTTTGTGGGTTCTTC +
Preference number: 3 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFSCSWH*LLCGFF
Trigger: GAAGAACCCACAAAGTAGCAAATGCCAGCTACAACT...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCACACTGGGGTGGGTGTaGGTGATACAACTCTCCTTG +
Preference number: 3 (lower is better)
Translates to: CKTHETQEELKEWSLWPFTLGWV*VIQLSL
Trigger: CAAGGAGAGTTGTATCACCAACACCCACCCCAGTGT...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTACAGTTTCACAAGAGCTaGAAACATTGCATTCTACAG +
Preference number: 3 (lower is better)
Translates to: GCNTGPPMEELEKVPKELQFHKS*KHCILQ
Trigger: CTGTAGAATGCAATGTTTCAAGCTCTTGTGAAACTG...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACTGGCCCTTCTTAGAATaGGGAACAAAACACCCATGG +
Preference number: 3 (lower is better)
Translates to: EERPLSLANFICLSTGEHWPFLE*GTKHPW
Trigger: CCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGCCA...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACGTGTTGGCCTTGTGTTaGGTACTATTTTCTTTGCCT +
Preference number: 3 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNVLALC*VLFSLP
Trigger: AGGCAAAGAAAATAGTACCAAACACAAGGCCAACAC...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACACTCTGTTCACTGTCTaGCTTCCCACAACTCAGTCT +
Preference number: 3 (lower is better)
Translates to: EERPLSLANFICLSTGEHTLFTV*LPTTQS
Trigger: AGACTGAGTTGTGGGAAGCAAGACAGTGAACAGAGT...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTGTTCTTCCCAGTTTCCAGCCCAGCCCCTTTAAATGTATCTCCTGGCCAAAAAACTCTGTTCACTGTCTaGCTTCCCACAACTCAGTCT +
Preference number: 3 (lower is better)
Translates to: LFFPVSSPAPLNVSPGQKTLFTV*LPTTQS
Trigger: AGACTGAGTTGTGGGAAGCAAGACAGTGAACAGAGT...TTTTTGGCCAGGAGATACATTTAAAGGGGCTGGGCTGGAAACTGGGAAGAACAG
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACGATGGAGTAGCCTGCTaGCAACTCCACCACAGCATC +
Preference number: 3 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDDGVAC*QLHHSI
Trigger: GATGCTGTGGTGGAGTTGCAAGCAGGCTACTCCATC...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACGTGATACAACTCTCCTaGAGTCATTTCTGTTTCTGT +
Preference number: 3 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNVIQLS*SHFCFC
Trigger: ACAGAAACAGAAATGACTCAAGGAGAGTTGTATCAC...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTATTGAACTGTCTCTTTaGAGGCTATGCTGGTGCCTG +
Preference number: 3 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVIELSL*RLCWCL
Trigger: CAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAAT...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTTGGCCCTTCTTAGAATaGGGAACAAAACACCCATGG +
Preference number: 3 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVWPFLE*GTKHPW
Trigger: CCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGCCA...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGGTCAGAACAGCTGAGTaGAACCAACCAGCCAGAATT +
Preference number: 3 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVVRTAE*NQPARI
Trigger: AATTCTGGCTGGTTGGTTCAACTCAGCTGTTCTGAC...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp CTGCTAGCCCTACCCCATGGCCCTGCCAGTCTCATCTaGCTTTTACTATATCCTATTCTGTTTCCAGAAATC +
Preference number: 3 (lower is better)
Translates to: LLALPHGPASLI*LLLYPILFPEI
Trigger: GATTTCTGGAAACAGAATAGGATATAGTAAAAGTCAGATGAGACTGGCAGGGCCATGGGGTAGGGCTAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp ACCCTGATTGAACTGTCTCTTTTGAGGCTATGCTGGTaGCTGGCAAACACAGAAGTGAATGCTCACAATCAG +
Preference number: 3 (lower is better)
Translates to: TLIELSLLRLCW*LANTEVNAHNQ
Trigger: CTGATTGTGAGCATTCACTTCTGTGTTTGCCAGGCACCAGCATAGCCTCAAAAGAGACAGTTCAATCAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACACACTGGGGTGGGTGTaGGTGATACAACTCTCCTTG +
Preference number: 3 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDTLGWV*VIQLSL
Trigger: CAAGGAGAGTTGTATCACCAACACCCACCCCAGTGT...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTCAGTTTCACAAGAGCTaGAAACATTGCATTCTACAG +
Preference number: 3 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCQFHKS*KHCILQ
Trigger: CTGTAGAATGCAATGTTTCAAGCTCTTGTGAAACTG...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGAGTTCTTCCTATGGGTaGCATGTTTTTCAACCTCAA +
Preference number: 3 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMSSSYG*HVFQPQ
Trigger: TTGAGGTTGAAAAACATGCAACCCATAGGAAGAACT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTGTTCTTCCCAGTTTCCAGCCCAGCCCCTTTAAATGTATCTCCTGGCCAAAAATCCAAACTATATCTTTaGCACCAACTGCCTTCTCTG +
Preference number: 3 (lower is better)
Translates to: LFFPVSSPAPLNVSPGQKSKLYL*HQLPSL
Trigger: CAGAGAAGGCAGTTGGTGCAAAAGATATAGTTTGGA...TTTTTGGCCAGGAGATACATTTAAAGGGGCTGGGCTGGAAACTGGGAAGAACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTGTTCTTCCCAGTTTCCAGCCCAGCCCCTTTAAATGTATCTCCTGGCCAAAAACAAGAGCTTGAAACATaGCATTCTACAGGAAAGTTC +
Preference number: 3 (lower is better)
Translates to: LFFPVSSPAPLNVSPGQKQELET*HSTGKF
Trigger: GAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTTG...TTTTTGGCCAGGAGATACATTTAAAGGGGCTGGGCTGGAAACTGGGAAGAACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTTCCAAACTATATCTTTaGCACCAACTGCCTTCTCTG +
Preference number: 3 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVSKLYL*HQLPSL
Trigger: CAGAGAAGGCAGTTGGTGCAAAAGATATAGTTTGGA...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp AGCCTGCTTGCAACTCCACCACAGCATCAGAGTGTTTaGATCATATTACATGCCCTGCAGAATACAGAAACT +
Preference number: 3 (lower is better)
Translates to: SLLATPPQHQSV*IILHALQNTET
Trigger: AGTTTCTGTATTCTGCAGGGCATGTAATATGATTCAAACACTCTGATGCTGTGGTGGAGTTGCAAGCAGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp CACATACCACTTTCAGTGACTAGCCCACTAGTCATTTaGGAGGCATCCAAATATTCACCCCTTATCCTCAGA +
Preference number: 3 (lower is better)
Translates to: HIPLSVTSPLVI*EASKYSPLILR
Trigger: TCTGAGGATAAGGGGTGAATATTTGGATGCCTCTCAAATGACTAGTGGGCTAGTCACTGAAAGTGGTATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp GTAACGTCGTCATTATACTGCCTGAGATATGGTGACTaGGGAGCAGTGTTGGCCTTGTGTTTGGTACTATTT +
Preference number: 3 (lower is better)
Translates to: VTSSLYCLRYGD*GAVLALCLVLF
Trigger: AAATAGTACCAAACACAAGGCCAACACTGCTCCTCAGTCACCATATCTCAGGCAGTATAATGACGACGTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp AAGGACACTTTTCAACCTGGTGAGCTACCTGCAGACTaGACAGTATACTCCAGGTTCTCAGATTTTGTGAAT +
Preference number: 3 (lower is better)
Translates to: KDTFQPGELPAD*TVYSRFSDFVN
Trigger: ATTCACAAAATCTGAGAACCTGGAGTATACTGTGCAGTCTGCAGGTAGCTCACCAGGTTGAAAAGTGTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp GCAAATGTAGCAGAAGATAGCCTAGTCAGCCATCATTaGGAAGAGAGGCCCCTTAGTCTTGCAAACTTTATA +
Preference number: 3 (lower is better)
Translates to: ANVAEDSLVSHH*EERPLSLANFI
Trigger: TATAAAGTTTGCAAGACTAAGGGGCCTCTCTTCCCAATGATGGCTGACTAGGCTATCTTCTGCTACATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp CATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTaGCCCTTCTTAGAATTGGGAACAAAACACCCATGG +
Preference number: 3 (lower is better)
Translates to: HETQEELKEWSL*PFLELGTKHPW
Trigger: CCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp TGGTTTCCTGTACCAGGTCATCTGCATGCTGTATCATaGACTTCCCACTTCTTCACATTAAAGATAGAACCC +
Preference number: 3 (lower is better)
Translates to: WFPVPGHLHAVS*TSHFFTLKIEP
Trigger: GGGTTCTATCTTTAATGTGAAGAAGTGGGAAGTCCATGATACAGCATGCAGATGACCTGGTACAGGAAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTGTGATACAACTCTCCTaGAGTCATTTCTGTTTCTGT +
Preference number: 3 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVVIQLS*SHFCFC
Trigger: ACAGAAACAGAAATGACTCAAGGAGAGTTGTATCAC...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCCAAGAGCTTGAAACATaGCATTCTACAGGAAAGTTC +
Preference number: 3 (lower is better)
Translates to: RTQRVVALALLRIGNKTPQELET*HSTGKF
Trigger: GAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTTG...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTCAAGAGCTTGAAACATaGCATTCTACAGGAAAGTTC +
Preference number: 3 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVQELET*HSTGKF
Trigger: GAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTTG...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTAGTTCTTCCTATGGGTaGCATGTTTTTCAACCTCAA +
Preference number: 3 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVSSSYG*HVFQPQ
Trigger: TTGAGGTTGAAAAACATGCAACCCATAGGAAGAACT...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp CCTGAGCGAGGTAACCCAATCACAAAAGAACTCACATaGTATGTACTCACTGATAAGTGGATATTAGCCCAG +
Preference number: 3 (lower is better)
Translates to: PERGNPITKELT*YVLTDKWILAQ
Trigger: CTGGGCTAATATCCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGATTGGGTTACCTCGCTCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp CTGTCAGCTTGGATTGGAATTTTGAGTCAGAACAGCTaGGTTGAACCAACCAGCCAGAATTCAGAAAGAACT +
Preference number: 3 (lower is better)
Translates to: LSAWIGILSQNS*VEPTSQNSERT
Trigger: AGTTCTTTCTGAATTCTGGCTGGTTGGTTCAACTCAGCTGTTCTGACTCAAAATTCCAATCCAAGCTGACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp ATCTCTGATTATCATGGTTTCCTGTACCAGGTCATCTaGATGCTGTATCATGGACTTCCCACTTCTTCACAT +
Preference number: 3 (lower is better)
Translates to: ISDYHGFLYQVI*MLYHGLPTSSH
Trigger: ATGTGAAGAAGTGGGAAGTCCATGATACAGCATGCAGATGACCTGGTACAGGAAACCATGATAATCAGAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp CTCCCTCACCCTCTCCCTTTTATTCAGTTCTTCCTATaGGTTGCATGTTTTTCAACCTCAAGAGGGTATATT +
Preference number: 3 (lower is better)
Translates to: LPHPLPFIQFFL*VACFSTSRGYI
Trigger: AATATACCCTCTTGAGGTTGAAAAACATGCAACCCATAGGAAGAACTGAATAAAAGGGAGAGGGTGAGGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACAGTTGTAGCTGGCATTaGCTACTTTGTGGGTTCTTC +
Preference number: 3 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDSCSWH*LLCGFF
Trigger: GAAGAACCCACAAAGTAGCAAATGCCAGCTACAACT...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCCAAGAGCTTGAAACATaGCATTCTACAGGAAAGTTC +
Preference number: 3 (lower is better)
Translates to: CKTHETQEELKEWSLWPFQELET*HSTGKF
Trigger: GAACTTTCCTGTAGAATGCAATGTTTCAAGCTCTTG...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTGGCCCTTCTTAGAATaGGGAACAAAACACCCATGG +
Preference number: 3 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMEWPFLE*GTKHPW
Trigger: CCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGCCA...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACCTCTCTTTCCTCATGTaGACACGTTATGTAGCCCTT +
Preference number: 3 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDLSFLM*TRYVAL
Trigger: AAGGGCTACATAACGTGTCAACATGAGGAAAGAGAG...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGCCAGGTTTTCATTTATaGTTCTCCAGTCCTAGATAT +
Preference number: 3 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVPGFHL*FSSPRY
Trigger: ATATCTAGGACTGGAGAACAATAAATGAAAACCTGG...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGTTTGAATCTGTCAGCTaGGATTGGAATTTTGAGTCA +
Preference number: 3 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVFESVS*DWNFES
Trigger: TGACTCAAAATTCCAATCCAAGCTGACAGATTCAAA...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGACTCTGTTCACTGTCTaGCTTCCCACAACTCAGTCT +
Preference number: 3 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMETLFTV*LPTTQS
Trigger: AGACTGAGTTGTGGGAAGCAAGACAGTGAACAGAGT...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp AATTCAGAGGCAGTTTTTCTAAGCAAATCAATTCAGTaGGAAGCTGAGGGAAGCCAGTTTGAATCTGTCAGC +
Preference number: 3 (lower is better)
Translates to: NSEAVFLSKSIQ*EAEGSQFESVS
Trigger: GCTGACAGATTCAAACTGGCTTCCCTCAGCTTCTCACTGAATTGATTTGCTTAGAAAAACTGCCTCTGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp TCCACCACAGCATCAGAGTGTTTGAATCATATTACATaGCCTGCAGAATACAGAAACTTCCAATCAACAGAC +
Preference number: 3 (lower is better)
Translates to: STTASECLNHIT*PAEYRNFQSTD
Trigger: GTCTGTTGATTGGAAGTTTCTGTATTCTGCAGGGCATGTAATATGATTCAAACACTCTGATGCTGTGGTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp CTGATTATCATGGTTTCCTGTACCAGGTCATCTGCATaGTGTATCATGGACTTCCCACTTCTTCACATTAAA +
Preference number: 3 (lower is better)
Translates to: LIIMVSCTRSSA*CIMDFPLLHIK
Trigger: TTTAATGTGAAGAAGTGGGAAGTCCATGATACAGCATGCAGATGACCTGGTACAGGAAACCATGATAATCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTTGGCCCTTCTTAGAATaGGGAACAAAACACCCATGG +
Preference number: 3 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSWPFLE*GTKHPW
Trigger: CCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGCCA...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGAGGAGAGTGTTTATTCAACTTACATCTTGTAGTCAGGCATGAAGGGAAGTTGGTGTTGGCCTTGTGTTaGGTACTATTTTCTTTGCCT +
Preference number: 3 (lower is better)
Translates to: RGECLFNLHLVVRHEGKLVLALC*VLFSLP
Trigger: AGGCAAAGAAAATAGTACCAAACACAAGGCCAACAC...CAACTTCCCTTCATGCCTGACTACAAGATGTAAGTTGAATAAACACTCTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR-3UTR CAA 90 bp AGAGGAGAGTGTTTATTCAACTTACATCTTGTAGTCAGGCATGAAGGGAAGTTGCAGTTTCACAAGAGCTaGAAACATTGCATTCTACAG +
Preference number: 3 (lower is better)
Translates to: RGECLFNLHLVVRHEGKLQFHKS*KHCILQ
Trigger: CTGTAGAATGCAATGTTTCAAGCTCTTGTGAAACTG...CAACTTCCCTTCATGCCTGACTACAAGATGTAAGTTGAATAAACACTCTCCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp AGAGTGTTTATTCAACTTACATCTTGTAGTCAGGCATaGAGGGAAGTTGTAGCTGGCATTTGCTACTTTGTG +
Preference number: 3 (lower is better)
Translates to: RVFIQLTSCSQA*REVVAGICYFV
Trigger: CACAAAGTAGCAAATGCCAGCTACAACTTCCCTTCATGCCTGACTACAAGATGTAAGTTGAATAAACACTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp CACATCCAAAGAACTTCTAGGTGTGATCAGGCTAGATaGCACACCTTTAATTCTTATAGCTGGAATACAGAC +
Preference number: 3 (lower is better)
Translates to: HIQRTSRCDQAR*HTFNSYSWNTD
Trigger: GTCTGTATTCCAGCTATAAGAATTAAAGGTGTGTCATCTAGCCTGATCACACCTAGAAGTTCTTTGGATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp TACTTTTGTGTAGTTCTAGCAGTTCTGTTCAGCTCATaGAGTCAGTGCAGTTCATTTTGTGAAATTCAGAGG +
Preference number: 3 (lower is better)
Translates to: YFCVVLAVLFSS*SQCSSFCEIQR
Trigger: CCTCTGAATTTCACAAAATGAACTGCACTGACTGCATGAGCTGAACAGAACTGCTAGAACTACACAAAAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTaGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAA +
Preference number: 3 (lower is better)
Translates to: CKTHETQEELKE*SLWPFLELGTK
Trigger: TTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp GATATGGTGACTGAGGAGCAGTGTTGGCCTTGTGTTTaGTACTATTTTCTTTGCCTTACGTATTTGAAGTTA +
Preference number: 3 (lower is better)
Translates to: DMVTEEQCWPCV*YYFLCLTYLKL
Trigger: TAACTTCAAATACGTAAGGCAAAGAAAATAGTACCAAACACAAGGCCAACACTGCTCCTCAGTCACCATATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp TATTCCTTTTCTCTTATATCTCCCAGCAAGAACTCATaGAGCCAACATCCTGATAGCATCTCTCTTTCTTCT +
Preference number: 3 (lower is better)
Translates to: YSFSLISPSKNS*SQHPDSISLSS
Trigger: AGAAGAAAGAGAGATGCTATCAGGATGTTGGCTTCATGAGTTCTTGCTGGGAGATATAAGAGAAAAGGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR GCA 72 bp TCACCCTCTCCCTTTTATTCAGTTCTTCCTATGGGTTaGATGTTTTTCAACCTCAAGAGGGTATATTTATCA +
Preference number: 3 (lower is better)
Translates to: SPSPFYSVLPMG*MFFNLKRVYLS
Trigger: TGATAAATATACCCTCTTGAGGTTGAAAAACATGCAACCCATAGGAAGAACTGAATAAAAGGGAGAGGGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp TCTGTTCAGCTCATGCAGTCAGTGCAGTTCATTTTGTaGAATTCAGAGGCAGTTTTTCTAAGCAAATCAATT +
Preference number: 3 (lower is better)
Translates to: SVQLMQSVQFIL*NSEAVFLSKSI
Trigger: AATTGATTTGCTTAGAAAAACTGCCTCTGAATTTCACAAAATGAACTGCACTGACTGCATGAGCTGAACAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp AATAATATTAAGGCAGGATTTAACTGTGTTTTTGAGTaGTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAA +
Preference number: 3 (lower is better)
Translates to: NNIKAGFNCVFE*CVFQGACHPIK
Trigger: TTTGATAGGGTGGCAAGCACCTTGAAACACACACCACTCAAAAACACAGTTAAATCCTGCCTTAATATTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp CTTCTAAGAATTCTTAAAAAGCCGGTTGACTATAACTaGGGATCCTTTGAAGGGTCCAGTCAACAAAATAAA +
Preference number: 3 (lower is better)
Translates to: LLRILKKPVDYN*GSFEGSSQQNK
Trigger: TTTATTTTGTTGACTGGACCCTTCAAAGGATCCCCAGTTATAGTCAACCGGCTTTTTAAGAATTCTTAGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR TCA 72 bp AATTTAGAATACCCAAGTTACAAGTTGCAAAACACATaGAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTG +
Preference number: 3 (lower is better)
Translates to: NLEYPSYKLQNT*NSRRTQRVVAL
Trigger: CAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCAACTTGTAACTTGGGTATTCTAAATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp TTCAAAGAAATTAGAAACTGCTCTGTGGTGCCACTTTaGTATAGGAGAGGAACCAATTTTAAGACTAAAAGA +
Preference number: 3 (lower is better)
Translates to: FKEIRNCSVVPL*YRRGTNFKTKR
Trigger: TCTTTTAGTCTTAAAATTGGTTCCTCTCCTATACCAAAGTGGCACCACAGAGCAGTTTCTAATTTCTTTGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp TTCTGTTGTGATAAAACACCATCACCAAAAGTATCTTaGAGAGGAGAGTGTTTATTCAACTTACATCTTGTA +
Preference number: 3 (lower is better)
Translates to: FCCDKTPSPKVS*RGECLFNLHLV
Trigger: TACAAGATGTAAGTTGAATAAACACTCTCCTCTCCAAGATACTTTTGGTGATGGTGTTTTATCACAACAGAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CCA 72 bp TCAATTGTTAATTCTCTACAGCAGAGAGCTAAATGTTaGCGTGGTCTTGGTATTGTTATTTATCGTATTTTG +
Preference number: 3 (lower is better)
Translates to: SIVNSLQQRAKC*RGLGIVIYRIL
Trigger: CAAAATACGATAAATAACAATACCAAGACCACGCCAACATTTAGCTCTCTGCTGTAGAGAATTAACAATTGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACGAGAGGCACAGGTATTaGATGCCTTGGACCTACCTT +
Preference number: 4 (lower is better)
Translates to: EERPLSLANFICLSTGEHERHRY*MPWTYL
Trigger: AAGGTAGGTCCAAGGCATTCAATACCTGTGCCTCTC...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAGATAACAATGACAGATaGCACCCCAAAAATCACTGC +
Preference number: 4 (lower is better)
Translates to: GCNTGPPMEELEKVPKELDNNDR*HPKNHC
Trigger: GCAGTGATTTTTGGGGTGGCATCTGTCATTGTTATC...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCGGACAGACCCAGGCTTaGGAAGATGAAGTACTGCAT +
Preference number: 4 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLGQTQA*EDEVLH
Trigger: ATGCAGTACTTCATCTTCTCAAGCCTGGGTCTGTCC...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp AGCCATAACACTGAAGAAAATGTGGCTTTCCCGCACAGTTCTCTCAATAAGCCCGAGAGGCACAGGTATTaGATGCCTTGGACCTACCTT +
Preference number: 4 (lower is better)
Translates to: SHNTEENVAFPHSSLNKPERHRY*MPWTYL
Trigger: AAGGTAGGTCCAAGGCATTCAATACCTGTGCCTCTC...GGGCTTATTGAGAGAACTGTGCGGGAAAGCCACATTTTCTTCAGTGTTATGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCGAGAGGCACAGGTATTaGATGCCTTGGACCTACCTT +
Preference number: 4 (lower is better)
Translates to: RTQRVVALALLRIGNKTPERHRY*MPWTYL
Trigger: AAGGTAGGTCCAAGGCATTCAATACCTGTGCCTCTC...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp GCCAGGCAGTCAGACACTCTCTTTCCTCATGTTGACACGTTATGTAGCCCTTGTGAGAAGATGAAGTACTaGATGGTGCACCCAACAAAG +
Preference number: 4 (lower is better)
Translates to: ARQSDTLFPHVDTLCSPCEKMKY*MVHPTK
Trigger: CTTTGTTGGGTGCACCATGCAGTACTTCATCTTCTC...ACAAGGGCTACATAACGTGTCAACATGAGGAAAGAGAGTGTCTGACTGCCTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGGAGAAGATGAAGTACTaGATGGTGCACCCAACAAAG +
Preference number: 4 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMEKMKY*MVHPTK
Trigger: CTTTGTTGGGTGCACCATGCAGTACTTCATCTTCTC...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCGAGAAGATGAAGTACTaGATGGTGCACCCAACAAAG +
Preference number: 4 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFEKMKY*MVHPTK
Trigger: CTTTGTTGGGTGCACCATGCAGTACTTCATCTTCTC...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp AGACTGGGCAAAAGGCAGAAGTGGGAGATTCAGCCAGCTGACATGAAGGTGAACGATAACAATGACAGATaGCACCCCAAAAATCACTGC +
Preference number: 4 (lower is better)
Translates to: RLGKRQKWEIQPADMKVNDNNDR*HPKNHC
Trigger: GCAGTGATTTTTGGGGTGGCATCTGTCATTGTTATC...GTTCACCTTCATGTCAGCTGGCTGAATCTCCCACTTCTGCCTTTTGCCCAGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGTACCTTCTACTGAGCTaGTATTCAGGATTGTGCCAA +
Preference number: 4 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMYLLLS*YSGLCQ
Trigger: TTGGCACAATCCTGAATATCAGCTCAGTAGAAGGTA...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGGATAACAATGACAGATaGCACCCCAAAAATCACTGC +
Preference number: 4 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMDNNDR*HPKNHC
Trigger: GCAGTGATTTTTGGGGTGGCATCTGTCATTGTTATC...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCGGCACAGGTATTGAATaGCTTGGACCTACCTTCTAC +
Preference number: 4 (lower is better)
Translates to: RTQRVVALALLRIGNKTPGTGIE*LGPTFY
Trigger: GTAGAAGGTAGGTCCAAGGCATTCAATACCTGTGCC...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CCA 90 bp GGATGCAACACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAATAGATTTAGACTTCTaGAAGAATCCCGAGAGCATT +
Preference number: 4 (lower is better)
Translates to: GCNTGPPMEELEKVPKELIDLDF*KNPESI
Trigger: AATGCTCTCGGGATTCTTCCAGAAGTCTAAATCTAT...TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAGGCCCTGTGTTGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 72 bp GAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATaGGGAACAAAACACCCATGGAAGGAGGTACAGAGA +
Preference number: 4 (lower is better)
Translates to: ELKEWSLWPFLE*GTKHPWKEVQR
Trigger: TCTCTGTACCTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACGAGCTTTGGAAAATCTaGGAATCCCACAAGGATGAA +
Preference number: 4 (lower is better)
Translates to: EERPLSLANFICLSTGEHELWKI*ESHKDE
Trigger: TTCATCCTTGTGGGATTCTCAGATTTTCCAAAGCTC...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CTGTTCTTCCCAGTTTCCAGCCCAGCCCCTTTAAATGTATCTCCTGGCCAAAAAGAGCTTTGGAAAATCTaGGAATCCCACAAGGATGAA +
Preference number: 4 (lower is better)
Translates to: LFFPVSSPAPLNVSPGQKELWKI*ESHKDE
Trigger: TTCATCCTTGTGGGATTCTCAGATTTTCCAAAGCTC...TTTTTGGCCAGGAGATACATTTAAAGGGGCTGGGCTGGAAACTGGGAAGAACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CAGAGTCCAGAAGTAGGCAATGGATCCTCTGAAGCTAGAGTTACAGGCAGCATGAGTATAGCACACAGTTaGATCAATGAACCCAAGAGA +
Preference number: 4 (lower is better)
Translates to: QSPEVGNGSSEARVTGSMSIAHS*INEPKR
Trigger: TCTCTTGGGTTCATTGATTCAACTGTGTGCTATACT...CATGCTGCCTGTAACTCTAGCTTCAGAGGATCCATTGCCTACTTCTGGACTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp AGGCTGCTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCGAAAGAACTAATAGCTaGGGCAGGTCACAAAAGAAA +
Preference number: 4 (lower is better)
Translates to: RLLTTVCNSSFRGSNSLFERTNS*GRSQKK
Trigger: TTTCTTTTGTGACCTGCCTCAGCTATTAGTTCTTTC...GAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAGCAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTGGACCTACCTTCTACTaGGCTGATATTCAGGATTGT +
Preference number: 4 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVGPTFY*ADIQDC
Trigger: ACAATCCTGAATATCAGCTCAGTAGAAGGTAGGTCC...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp TGCTTGCAACTCCACCACAGCATCAGAGTGTTTGAATCATATTACATGCCCTGCGAGAAGATGAAGTACTaGATGGTGCACCCAACAAAG +
Preference number: 4 (lower is better)
Translates to: CLQLHHSIRVFESYYMPCEKMKY*MVHPTK
Trigger: CTTTGTTGGGTGCACCATGCAGTACTTCATCTTCTC...GCAGGGCATGTAATATGATTCAAACACTCTGATGCTGTGGTGGAGTTGCAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTGAGCTTTGGAAAATCTaGGAATCCCACAAGGATGAA +
Preference number: 4 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVELWKI*ESHKDE
Trigger: TTCATCCTTGTGGGATTCTCAGATTTTCCAAAGCTC...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCGAGCTTTGGAAAATCTaGGAATCCCACAAGGATGAA +
Preference number: 4 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLELWKI*ESHKDE
Trigger: TTCATCCTTGTGGGATTCTCAGATTTTCCAAAGCTC...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACAGTATAGCACACAGTTaGATCAATGAACCCAAGAGA +
Preference number: 4 (lower is better)
Translates to: EERPLSLANFICLSTGEHSIAHS*INEPKR
Trigger: TCTCTTGGGTTCATTGATTCAACTGTGTGCTATACT...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTTACCTTCTACTGAGCTaGTATTCAGGATTGTGCCAA +
Preference number: 4 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVYLLLS*YSGLCQ
Trigger: TTGGCACAATCCTGAATATCAGCTCAGTAGAAGGTA...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCTACCTTCTACTGAGCTaGTATTCAGGATTGTGCCAA +
Preference number: 4 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLYLLLS*YSGLCQ
Trigger: TTGGCACAATCCTGAATATCAGCTCAGTAGAAGGTA...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp CCCTTCTCCCAGTTTTTCCAACACTATCAACTCCTCACTATAACAACTGTTCTAGAGAGGCACAGGTATTaGATGCCTTGGACCTACCTT +
Preference number: 4 (lower is better)
Translates to: PFSQFFQHYQLLTITTVLERHRY*MPWTYL
Trigger: AAGGTAGGTCCAAGGCATTCAATACCTGTGCCTCTC...TAGAACAGTTGTTATAGTGAGGAGTTGATAGTGTTGGAAAAACTGGGAGAAGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp GAAGAGAGGCCCCTTAGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACACACAAATTTCAAGACTTaGAGGGGAAAGGTTTCAGAG +
Preference number: 4 (lower is better)
Translates to: EERPLSLANFICLSTGEHTNFKT*RGKVSE
Trigger: CTCTGAAACCTTTCCCCTGCAAGTCTTGAAATTTGT...GTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACTAAGGGGCCTCTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGAGTATAGCACACAGTTaGATCAATGAACCCAAGAGA +
Preference number: 4 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVSIAHS*INEPKR
Trigger: TCTCTTGGGTTCATTGATTCAACTGTGTGCTATACT...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCGAAAGAACTAATAGCTaGGGCAGGTCACAAAAGAAA +
Preference number: 4 (lower is better)
Translates to: RTQRVVALALLRIGNKTPERTNS*GRSQKK
Trigger: TTTCTTTTGTGACCTGCCTCAGCTATTAGTTCTTTC...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 72 bp GCAAATCAATTCAGTGAGAAGCTGAGGGAAGCCAGTTaGAATCTGTCAGCTTGGATTGGAATTTTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: ANQFSEKLREAS*NLSAWIGILSQ
Trigger: CTGACTCAAAATTCCAATCCAAGCTGACAGATTCAAACTGGCTTCCCTCAGCTTCTCACTGAATTGATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCGAAAGAACTAATAGCTaGGGCAGGTCACAAAAGAAA +
Preference number: 4 (lower is better)
Translates to: CKTHETQEELKEWSLWPFERTNS*GRSQKK
Trigger: TTTCTTTTGTGACCTGCCTCAGCTATTAGTTCTTTC...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACGGACCTACCTTCTACTaGGCTGATATTCAGGATTGT +
Preference number: 4 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDGPTFY*ADIQDC
Trigger: ACAATCCTGAATATCAGCTCAGTAGAAGGTAGGTCC...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGGGCACAGGTATTGAATaGCTTGGACCTACCTTCTAC +
Preference number: 4 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMEGTGIE*LGPTFY
Trigger: GTAGAAGGTAGGTCCAAGGCATTCAATACCTGTGCC...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CCA 90 bp CTCACAACTGTCTGTAACTCCAGCTTCAGAGGATCCAACAGTCTCTTCTGTGTTATAGATTTAGACTTCTaGAAGAATCCCGAGAGCATT +
Preference number: 4 (lower is better)
Translates to: LTTVCNSSFRGSNSLFCVIDLDF*KNPESI
Trigger: AATGCTCTCGGGATTCTTCCAGAAGTCTAAATCTAT...AACACAGAAGAGACTGTTGGATCCTCTGAAGCTGGAGTTACAGACAGTTGTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGATAGATTTAGACTTCTaGAAGAATCCCGAGAGCATT +
Preference number: 4 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVIDLDF*KNPESI
Trigger: AATGCTCTCGGGATTCTTCCAGAAGTCTAAATCTAT...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGGGACCTACCTTCTACTaGGCTGATATTCAGGATTGT +
Preference number: 4 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMEGPTFY*ADIQDC
Trigger: ACAATCCTGAATATCAGCTCAGTAGAAGGTAGGTCC...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp GTGTGTGTTTCAAGGTGCTTGCCACCCTATCAAATAGTGTTAGGGTACCTTGTGCACCCCAAAAATCACTaGTATTACAAATTTCAAGAC +
Preference number: 4 (lower is better)
Translates to: VCVSRCLPPYQIVLGYLVHPKNH*YYKFQD
Trigger: GTCTTGAAATTTGTAATAGCAGTGATTTTTGGGGTG...CACAAGGTACCCTAACACTATTTGATAGGGTGGCAAGCACCTTGAAACACACAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp AGAACTCAAAGAGTGGTCGCTTTGGCCCTTCTTAGAATTGGGAACAAAACACCCCACCCCAAAAATCACTaGTATTACAAATTTCAAGAC +
Preference number: 4 (lower is better)
Translates to: RTQRVVALALLRIGNKTPHPKNH*YYKFQD
Trigger: GTCTTGAAATTTGTAATAGCAGTGATTTTTGGGGTG...GGGTGTTTTGTTCCCAATTCTAAGAAGGGCCAAAGCGACCACTCTTTGAGTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp TGCTTGCAACTCCACCACAGCATCAGAGTGTTTGAATCATATTACATGCCCTGCCACCCCAAAAATCACTaGTATTACAAATTTCAAGAC +
Preference number: 4 (lower is better)
Translates to: CLQLHHSIRVFESYYMPCHPKNH*YYKFQD
Trigger: GTCTTGAAATTTGTAATAGCAGTGATTTTTGGGGTG...GCAGGGCATGTAATATGATTCAAACACTCTGATGCTGTGGTGGAGTTGCAAGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp CCCTTCTCCCAGTTTTTCCAACACTATCAACTCCTCACTATAACAACTGTTCTAGATAACAATGACAGATaGCACCCCAAAAATCACTGC +
Preference number: 4 (lower is better)
Translates to: PFSQFFQHYQLLTITTVLDNNDR*HPKNHC
Trigger: GCAGTGATTTTTGGGGTGGCATCTGTCATTGTTATC...TAGAACAGTTGTTATAGTGAGGAGTTGATAGTGTTGGAAAAACTGGGAGAAGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000213657.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTGGCACAGGTATTGAATaGCTTGGACCTACCTTCTAC +
Preference number: 4 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSGTGIE*LGPTFY
Trigger: GTAGAAGGTAGGTCCAAGGCATTCAATACCTGTGCC...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGTACCTTCTACTGAGCTaGTATTCAGGATTGTGCCAA +
Preference number: 4 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKYLLLS*YSGLCQ
Trigger: TTGGCACAATCCTGAATATCAGCTCAGTAGAAGGTA...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 72 bp CTCACCCTCTCCCTTTTATTCAGTTCTTCCTATGGGTaGCATGTTTTTCAACCTCAAGAGGGTATATTTATC +
Preference number: 4 (lower is better)
Translates to: LTLSLLFSSSYG*HVFQPQEGIFI
Trigger: GATAAATATACCCTCTTGAGGTTGAAAAACATGCAACCCATAGGAAGAACTGAATAAAAGGGAGAGGGTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp GTCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGAGTATAGCACACAGTTaGATCAATGAACCCAAGAGA +
Preference number: 4 (lower is better)
Translates to: VPQQRNGYRKMWYIYTMESIAHS*INEPKR
Trigger: TCTCTTGGGTTCATTGATTCAACTGTGTGCTATACT...CTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR TCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTGAAAGAACTAATAGCTaGGGCAGGTCACAAAAGAAA +
Preference number: 4 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSERTNS*GRSQKK
Trigger: TTTCTTTTGTGACCTGCCTCAGCTATTAGTTCTTTC...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 72 bp TCTATAATAATATTAAGGCAGGATTTAACTGTGTTTTaGAGTGGTGTGTGTTTCAAGGTGCTTGCCACCCTA +
Preference number: 4 (lower is better)
Translates to: SIIILRQDLTVF*SGVCFKVLATL
Trigger: TAGGGTGGCAAGCACCTTGAAACACACACCACTCAAAAACACAGTTAAATCCTGCCTTAATATTATTATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR GCA 90 bp TGTGAGGACACACATGGTTCAGCCATAGTTGTAAATATTATTTCCAAGAGCAAGCACCCCAAAAATCACTaGTATTACAAATTTCAAGAC +
Preference number: 4 (lower is better)
Translates to: CEDTHGSAIVVNIISKSKHPKNH*YYKFQD
Trigger: GTCTTGAAATTTGTAATAGCAGTGATTTTTGGGGTG...CTTGCTCTTGGAAATAATATTTACAACTATGGCTGAACCATGTGTGTCCTCACA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CCA 90 bp TCCCTCAACAGAGGAATGGATACAGAAAAATGTGGTATATTTACACAATGGAGTATAGATTTAGACTTCTaGAAGAATCCCGAGAGCATT +
Preference number: 4 (lower is better)
Translates to: SLNRGMDTEKCGIFTQWSIDLDF*KNPESI
Trigger: AATGCTCTCGGGATTCTTCCAGAAGTCTAAATCTAT...ACTCCATTGTGTAAATATACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
3UTR CAA 72 bp GGTACCTTGTGTGAAGGTATATCTTCATATATTCAATaGTTAATTCTCTACAGCAGAGAGCTAAATGTTGGC +
Preference number: 4 (lower is better)
Translates to: GTLCEGISSYIQ*LILYSRELNVG
Trigger: GCCAACATTTAGCTCTCTGCTGTAGAGAATTAACAATTGAATATATGAAGATATACCTTCACACAAGGTACC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CAA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCACAAAGAGAACCAGCTaGAGCTTTGGAAAATCTGAG +
Preference number: 5 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLTKRTS*SFGKSE
Trigger: CTCAGATTTTCCAAAGCTCAAGCTGGTTCTCTTTGT...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CAA 90 bp TGCAAAACACATGAAACTCAAGAAGAACTCAAAGAGTGGTCGCTTTGGCCCTTCACAAAGAGAACCAGCTaGAGCTTTGGAAAATCTGAG +
Preference number: 5 (lower is better)
Translates to: CKTHETQEELKEWSLWPFTKRTS*SFGKSE
Trigger: CTCAGATTTTCCAAAGCTCAAGCTGGTTCTCTTTGT...GAAGGGCCAAAGCGACCACTCTTTGAGTTCTTCTTGAGTTTCATGTGTTTTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CAA 90 bp CCTATAGGTGGAACAACAATACAAACTAACCAGTACCCCCAGAGCTCATGTCTCTACAAATTTCAAGACTaGCAGGGGAAAGGTTTCAGA +
Preference number: 5 (lower is better)
Translates to: PIGGTTIQTNQYPQSSCLYKFQD*QGKGFR
Trigger: TCTGAAACCTTTCCCCTGCAAGTCTTGAAATTTGTA...GAGACATGAGCTCTGGGGGTACTGGTTAGTTTGTATTGTTGTTCCACCTATAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CAA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACACAAAGAGAACCAGCTaGAGCTTTGGAAAATCTGAG +
Preference number: 5 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDTKRTS*SFGKSE
Trigger: CTCAGATTTTCCAAAGCTCAAGCTGGTTCTCTTTGT...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3
CDS-3UTR CAA 90 bp AGTTTGATAAGGGCAGCTTATAGGATCGTGGGTAAGGATTATTTACAGAAGGACTACAAATTTCAAGACTaGCAGGGGAAAGGTTTCAGA +
Preference number: 5 (lower is better)
Translates to: SLIRAAYRIVGKDYLQKDYKFQD*QGKGFR
Trigger: TCTGAAACCTTTCCCCTGCAAGTCTTGAAATTTGTA...GTCCTTCTGTAAATAATCCTTACCCACGATCCTATAAGCTGCCCTTATCAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000213657.2
ENSMUST00000213894.2
ENSMUST00000216145.2
ENSMUST00000217062.3