Pregenerated sensors for OLFR1427 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067525

Ensembl transcript IDs: ENSMUST00000215374.2, ENSMUST00000216069.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	CAAAGGCAGACTGTAAGTCAAGTGCACAGTTACTTTTaGCAGAGTCATAGAGAATGCACAACAGCAGGGAAT	+
Preference number: 3 (lower is better) Translates to: QRQTVSQVHSYF*QSHRECTTAGN Trigger: ATTCCCTGCTGTTGTGCATTCTCTATGACTCTGTCAAAAGTAACTGTGCACTTGACTTACAGTCTGCCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000215374.2 ENSMUST00000216069.2
3UTR GCA 72 bp	AACCCCGTTCTACAGACCATTGATAGGCAACTCAGGTaGTTCTATTATAGTTCATGTTTATTCTTTGCTTTC	+
Preference number: 3 (lower is better) Translates to: NPVLQTIDRQLR*FYYSSCLFFAF Trigger: GAAAGCAAAGAATAAACATGAACTATAATAGAAGCACCTGAGTTGCCTATCAATGGTCTGTAGAACGGGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000215374.2 ENSMUST00000216069.2
CDS-3UTR GCA 90 bp	CCATTGATAGGCAACTCAGGTGCTTCTATTATAGTTCATGTTTATTCTTTGCTTTCCAACCCAGGAGGCTaGGATGAGGGCTGTGCACCG	+
Preference number: 4 (lower is better) Translates to: PLIGNSGASIIVHVYSLLSNPGG*DEGCAP Trigger: CGGTGCACAGCCCTCATCGCAGCCTCCTGGGTTGGA...AAGCAAAGAATAAACATGAACTATAATAGAAGCACCTGAGTTGCCTATCAATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000215374.2 ENSMUST00000216069.2
CDS-3UTR TCA 90 bp	CCATTGATAGGCAACTCAGGTGCTTCTATTATAGTTCATGTTTATTCTTTGCTTACCGCCCTCTACTCATaGTGGTCACATAGTGCAGAG	+
Preference number: 4 (lower is better) Translates to: PLIGNSGASIIVHVYSLLTALYS*WSHSAE Trigger: CTCTGCACTATGTGACCATCATGAGTAGAGGGCGGT...AAGCAAAGAATAAACATGAACTATAATAGAAGCACCTGAGTTGCCTATCAATGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000215374.2 ENSMUST00000216069.2
CDS-3UTR TCA 90 bp	CCATTGATAGGCAACTCAGGTGCTTCTATTATAGTTCATGTTTATTCTTTGCTTGCCCTCTCCTGTGTGTaGCCTCAGCATTGTCAAGAT	+
Preference number: 4 (lower is better) Translates to: PLIGNSGASIIVHVYSLLALSCV*PQHCQD Trigger: ATCTTGACAATGCTGAGGTCACACACAGGAGAGGGC...AAGCAAAGAATAAACATGAACTATAATAGAAGCACCTGAGTTGCCTATCAATGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000215374.2 ENSMUST00000216069.2
CDS-3UTR TCA 90 bp	CCATTGATAGGCAACTCAGGTGCTTCTATTATAGTTCATGTTTATTCTTTGCTTGAAGATCTGCACAATTaGGTGGACAAAGCCTCCAAC	+
Preference number: 4 (lower is better) Translates to: PLIGNSGASIIVHVYSLLEDLHN*VDKASN Trigger: GTTGGAGGCTTTGTCCACTCAATTGTGCAGATCTTC...AAGCAAAGAATAAACATGAACTATAATAGAAGCACCTGAGTTGCCTATCAATGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000215374.2 ENSMUST00000216069.2
CDS-3UTR GCA 90 bp	CCATTGATAGGCAACTCAGGTGCTTCTATTATAGTTCATGTTTATTCTTTGCTTAGCAAGAGGAAGATCTaGACAATTGAGTGGACAAAG	+
Preference number: 4 (lower is better) Translates to: PLIGNSGASIIVHVYSLLSKRKI*TIEWTK Trigger: CTTTGTCCACTCAATTGTGCAGATCTTCCTCTTGCT...AAGCAAAGAATAAACATGAACTATAATAGAAGCACCTGAGTTGCCTATCAATGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000215374.2 ENSMUST00000216069.2
CDS-3UTR TCA 90 bp	CCATTGATAGGCAACTCAGGTGCTTCTATTATAGTTCATGTTTATTCTTTGCTTTGGAAGAAAAAGATCTaGGTGAAGCAGCCATTGAAA	+
Preference number: 4 (lower is better) Translates to: PLIGNSGASIIVHVYSLLWKKKI*VKQPLK Trigger: TTTCAATGGCTGCTTCACTCAGATCTTTTTCTTCCA...AAGCAAAGAATAAACATGAACTATAATAGAAGCACCTGAGTTGCCTATCAATGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000215374.2 ENSMUST00000216069.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu