RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1414 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042849

Ensembl transcript IDs: ENSMUST00000062353.12, ENSMUST00000189174.2

Found 125 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCACTTCAGCTGCTTCCTGCCTCCGCGCTTTGCTGCCGCTTCCTTTaGTCTTCTCCACTCTTCCACCCAAACCACTCATGTTCCAAAATG +
Preference number: 1 (lower is better)
Translates to: PLQLLPASALCCRFL*SSPLFHPNHSCSKM
Trigger: CATTTTGGAACATGAGTGGTTTGGGTGGAAGAGTGGAGAAGAGCAAAGGAAGCGGCAGCAAAGCGCGGAGGCAGGAAGCAGCTGAAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 90 bp CTTTGGCTGTGGGCTAGCAGTCAGACAACTTTCCTGGAAGGTAAGTaGCTCTTGGGGGTTCTCATCCTGCAACCCCAGGAGAAGATTGGG +
Preference number: 1 (lower is better)
Translates to: LWLWASSQTTFLEGK*LLGVLILQPQEKIG
Trigger: CCCAATCTTCTCCTGGGGTTGCAGGATGAGAACCCCCAAGAGGCACTTACCTTCCAGGAAAGTTGTCTGACTGCTAGCCCACAGCCAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 90 bp GTGTTGATAGTGGCTGTAGCTATGGCAGTGAGCACAGGAGACAGCTaGTCTCATTTTACCCTCGGTCAAGAGGGAGGGAGGGAGAGGATG +
Preference number: 1 (lower is better)
Translates to: VLIVAVAMAVSTGDS*SHFTLGQEGGRERM
Trigger: CATCCTCTCCCTCCCTCCCTCTTGACCGAGGGTAAAATGAGACCAGCTGTCTCCTGTGCTCACTGCCATAGCTACAGCCACTATCAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 90 bp GCTGGTCTCATTTTACCCTCGGTCAAGAGGGAGGGAGGGAGAGGATaGGCCATGTTTACTCAGTCTCCTCCTTTTCATTCAATCCAGGGC +
Preference number: 1 (lower is better)
Translates to: AGLILPSVKREGGRG*AMFTQSPPFHSIQG
Trigger: GCCCTGGATTGAATGAAAAGGAGGAGACTGAGTAAACATGGCCCATCCTCTCCCTCCCTCCCTCTTGACCGAGGGTAAAATGAGACCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 90 bp GTGATCTCTGCTGAAATACTCCACAAGGCCAGCCATTCCAAGTCCTaGGGGGTTGTGTCGGTTTCTGTAGAATGCACTCCCTACCTCTGC +
Preference number: 1 (lower is better)
Translates to: VISAEILHKASHSKS*GVVSVSVECTPYLC
Trigger: GCAGAGGTAGGGAGTGCATTCTACAGAAACCGACACAACCCCTCAGGACTTGGAATGGCTGGCCTTGTGGAGTATTTCAGCAGAGATCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 90 bp TGTGGGCTAGCAGTCAGACAACTTTCCTGGAAGGTAAGTGCCTCTTaGGGGTTCTCATCCTGCAACCCCAGGAGAAGATTGGGAAGATGT +
Preference number: 1 (lower is better)
Translates to: CGLAVRQLSWKVSAS*GFSSCNPRRRLGRC
Trigger: ACATCTTCCCAATCTTCTCCTGGGGTTGCAGGATGAGAACCCCCAAGAGGCACTTACCTTCCAGGAAAGTTGTCTGACTGCTAGCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 90 bp GTTCATATGGATAACCCCAAAGCTGCTACCCCAGCCCTAGCCTCCTaGTTGGAACATCTGCTGGAGACCCAAGACAATGCTGAGAAGATG +
Preference number: 1 (lower is better)
Translates to: VHMDNPKAATPALAS*LEHLLETQDNAEKM
Trigger: CATCTTCTCAGCATTGTCTTGGGTCTCCAGCAGATGTTCCAACCAGGAGGCTAGGGCTGGGGTAGCAGCTTTGGGGTTATCCATATGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 90 bp CCTAGCCTCCTGGTTGGAACATCTGCTGGAGACCCAAGACAATGCTaGGAAGATGGGCAAGTTTCTCCTAGAAGAAGGTGGACAGCTTTC +
Preference number: 1 (lower is better)
Translates to: PSLLVGTSAGDPRQC*EDGQVSPRRRWTAF
Trigger: GAAAGCTGTCCACCTTCTTCTAGGAGAAACTTGCCCATCTTCTCAGCATTGTCTTGGGTCTCCAGCAGATGTTCCAACCAGGAGGCTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 90 bp CTCAGCAATGTAGGATCAGAAGTGGAGGCTCATGGTGTTGCTTTCTaGGATAGTATAGTGGACAGTCCTCAGCCTCATGTCCCCAGTGCA +
Preference number: 1 (lower is better)
Translates to: LSNVGSEVEAHGVAF*DSIVDSPQPHVPSA
Trigger: TGCACTGGGGACATGAGGCTGAGGACTGTCCACTATACTATCTCAGAAAGCAACACCATGAGCCTCCACTTCTGATCCTACATTGCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 90 bp TCCCAGCCTGCCTCCTTGTTTGCTAAGGGACACCGGTCACCGTGGTaGAATTTAAGGAAGCAACAGTCCCAAGAAGACATACATAATCCA +
Preference number: 1 (lower is better)
Translates to: SQPASLFAKGHRSPW*NLRKQQSQEDIHNP
Trigger: TGGATTATGTATGTCTTCTTGGGACTGTTGCTTCCTTAAATTTCACCACGGTGACCGGTGTCCCTTAGCAAACAAGGAGGCAGGCTGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 90 bp GAAAGTGTTTCAGGATTAGAGCCAGCCCAGCCCTGGAGCTTCCTGTaGTACAGACATCATATGGTTCAGGAAAACTCAGCCAATGTTCGT +
Preference number: 1 (lower is better)
Translates to: ESVSGLEPAQPWSFL*YRHHMVQENSANVR
Trigger: ACGAACATTGGCTGAGTTTTCCTGAACCATATGATGTCTGTAGCACAGGAAGCTCCAGGGCTGGGCTGGCTCTAATCCTGAAACACTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 90 bp GGGCAAGTTTCTCCTAGAAGAAGGTGGACAGCTTTCCCAAGCACATaGACAGGACTTTCTTGGCTTGATGGCAGACTTACTATCCCTTCT +
Preference number: 1 (lower is better)
Translates to: GQVSPRRRWTAFPST*TGLSWLDGRLTIPS
Trigger: AGAAGGGATAGTAAGTCTGCCATCAAGCCAAGAAAGTCCTGTCCATGTGCTTGGGAAAGCTGTCCACCTTCTTCTAGGAGAAACTTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 90 bp AAGCTTGACTTAAACGTTAGGGAAGCAGCCAGGTGTGGTGATTCATaGCTACACTCCCAGCAATTGAAATTTAGAGGCAGGAGGATCAGG +
Preference number: 1 (lower is better)
Translates to: KLDLNVREAARCGDS*LHSQQLKFRGRRIR
Trigger: CCTGATCCTCCTGCCTCTAAATTTCAATTGCTGGGAGTGTAGGCATGAATCACCACACCTGGCTGCTTCCCTAACGTTTAAGTCAAGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 90 bp GTTTTGACATCAACCTGGACACTGGGGAAACTACTTGACTTTGTGTaGGCTAGTCCTACCAGGTATCAGACAGGTGGAAGGGATAACATG +
Preference number: 1 (lower is better)
Translates to: VLTSTWTLGKLLDFV*ASPTRYQTGGRDNM
Trigger: CATGTTATCCCTTCCACCTGTCTGATACCTGGTAGGACTAGCTCACACAAAGTCAAGTAGTTTCCCCAGTGTCCAGGTTGATGTCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 90 bp AAGGTGGACAGCTTTCCCAAGCACATGGACAGGACTTTCTTGGCTTaGTGGCAGACTTACTATCCCTTCTTACTTGTTGCTGTCTTAGTC +
Preference number: 1 (lower is better)
Translates to: KVDSFPKHMDRTFLA*WQTYYPFLLVAVLV
Trigger: GACTAAGACAGCAACAAGTAAGAAGGGATAGTAAGTCTGCCATCAAGCCAAGAAAGTCCTGTCCATGTGCTTGGGAAAGCTGTCCACCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 90 bp CAAACTCTGTTCCTTTGTCTCCATGTCATGTTGCCACCATTAAGGTaGAGCTCACATGTGTCAGTCAACATCAAGGCAGGTTGTGTGCTG +
Preference number: 1 (lower is better)
Translates to: QTLFLCLHVMLPPLR*SSHVSVNIKAGCVL
Trigger: CAGCACACAACCTGCCTTGATGTTGACTGACACATGTGAGCTTCACCTTAATGGTGGCAACATGACATGGAGACAAAGGAACAGAGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 90 bp AGAAGAAGGTGGACAGCTTTCCCAAGCACATGGACAGGACTTTCTTaGCTTGATGGCAGACTTACTATCCCTTCTTACTTGTTGCTGTCT +
Preference number: 1 (lower is better)
Translates to: RRRWTAFPSTWTGLS*LDGRLTIPSYLLLS
Trigger: AGACAGCAACAAGTAAGAAGGGATAGTAAGTCTGCCATCAAGCCAAGAAAGTCCTGTCCATGTGCTTGGGAAAGCTGTCCACCTTCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 90 bp AGAACTTCTCAGGTACAGTGGGACTGCCTTCAATACAACCCCAAGTaGCAAACTCTGTTCCTTTGTCTCCATGTCATGTTGCCACCATTA +
Preference number: 1 (lower is better)
Translates to: RTSQVQWDCLQYNPK*QTLFLCLHVMLPPL
Trigger: TAATGGTGGCAACATGACATGGAGACAAAGGAACAGAGTTTGCCACTTGGGGTTGTATTGAAGGCAGTCCCACTGTACCTGAGAAGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 90 bp GAAGGGATAACATGTGTCTGCCACAGAACTAGACAGTGGCAGATTTaGACGTCCCTTTTTGCTTTTGAGTTCACTCTTGTGTCTGTCAAC +
Preference number: 1 (lower is better)
Translates to: EGITCVCHRTRQWQI*TSLFAFEFTLVSVN
Trigger: GTTGACAGACACAAGAGTGAACTCAAAAGCAAAAAGGGACGTGCAAATCTGCCACTGTCTAGTTCTGTGGCAGACACATGTTATCCCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 90 bp CACGCTCTGGTCCAAGCCTCCTCAGAAAGAACCATCTACTTAATATaGAGCACCCGGGATGCTGATTTGATTAAAAACAAAGTTGGCATC +
Preference number: 1 (lower is better)
Translates to: HALVQASSERTIYLI*STRDADLIKNKVGI
Trigger: GATGCCAACTTTGTTTTTAATCAAATCAGCATCCCGGGTGCTGCATATTAAGTAGATGGTTCTTTCTGAGGAGGCTTGGACCAGAGCGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 90 bp CCTGCTAAGTGTTGGGGAGCTTTAATGTTCAGGTGGGTTTTCAGCTaGAGAAGAAAGTCTGTGATCTTCCAATTGAGGACAAAGACCTTT +
Preference number: 1 (lower is better)
Translates to: PAKCWGALMFRWVFS*RRKSVIFQLRTKTF
Trigger: AAAGGTCTTTGTCCTCAATTGGAAGATCACAGACTTTCTTCTCCAGCTGAAAACCCACCTGAACATTAAAGCTCCCCAACACTTAGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 90 bp TTTGCTTTTGAGTTCACTCTTGTGTCTGTCAACAAACCAACTTACTaGTCTTATTTATACTCTGACTTTGCCAGTACAGAAAGCTTGACT +
Preference number: 1 (lower is better)
Translates to: FAFEFTLVSVNKPTY*SYLYSDFASTESLT
Trigger: AGTCAAGCTTTCTGTACTGGCAAAGTCAGAGTATAAATAAGAGCAGTAAGTTGGTTTGTTGACAGACACAAGAGTGAACTCAAAAGCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp CCAGGGCACCAATGTGCTTTCTCCACCCTAACCCCAAATTCTCCCTaGAACCCTAGCTATCCCATGTGTTCACCACCTCATCCCAGGGCT +
Preference number: 2 (lower is better)
Translates to: PGHQCAFSTLTPNSP*NPSYPMCSPPHPRA
Trigger: AGCCCTGGGATGAGGTGGTGAACACATGGGATAGCTAGGGTTCAAGGGAGAATTTGGGGTTAGGGTGGAGAAAGCACATTGGTGCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR TCA 90 bp ATTGAGAGGCCCAGTTCTTATTACAGCACCAGAGAAAGACAGTTTCAGGGGCAAACCCCCAGGCTCTCCTaGACCGCCTCCTGCGGGTTT +
Preference number: 2 (lower is better)
Translates to: IERPSSYYSTRERQFQGQTPRLS*TASCGF
Trigger: AAACCCGCAGGAGGCGGTTCAGGAGAGCCTGGGGGT...TTGCCCCTGAAACTGTCTTTCTCTGGTGCTGTAATAAGAACTGGGCCTCTCAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp CTGTGGGCTAGCAGTCAGACAACTTTCCTGGAAGGTAAGTGCCTCTaGGGGGTTCTCATCCTGCAACCCCAGGAGAAGATTGGGAAGATG +
Preference number: 2 (lower is better)
Translates to: LWASSQTTFLEGKCL*GVLILQPQEKIGKM
Trigger: CATCTTCCCAATCTTCTCCTGGGGTTGCAGGATGAGAACCCCCAAGAGGCACTTACCTTCCAGGAAAGTTGTCTGACTGCTAGCCCACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp CATTTCCAGCTGGGAGCCTGTCTAATGATGCTTGGGAAAGGTGCATaGCACACCCAGAGGTCACACACTGAAGACCTGGGGTCTGTAAGT +
Preference number: 2 (lower is better)
Translates to: HFQLGACLMMLGKGA*HTQRSHTEDLGSVS
Trigger: ACTTACAGACCCCAGGTCTTCAGTGTGTGACCTCTGGGTGTGCAATGCACCTTTCCCAAGCATCATTAGACAGGCTCCCAGCTGGAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp CATCCTGCAACCCCAGGAGAAGATTGGGAAGATGTCTCAGACAGTGTAGATGTTGCTCAGGAAATGCTCTaGAAGCAGAAGGTGCCCTCC +
Preference number: 2 (lower is better)
Translates to: HPATPGEDWEDVSDSVDVAQEML*KQKVPS
Trigger: GGAGGGCACCTTCTGCTTCCAGAGCATTTCCTGAGC...AACATCTACACTGTCTGAGACATCTTCCCAATCTTCTCCTGGGGTTGCAGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR TCA 90 bp GCTGATGCTTGCCTTTCTAAGTTCACTGGAGTCATCAGGAGCATTTCCAGCTGGCCCCAAATTCTCCCTTaGACCCTAGCTATCCCATGT +
Preference number: 2 (lower is better)
Translates to: ADACLSKFTGVIRSISSWPQILP*TLAIPC
Trigger: ACATGGGATAGCTAGGGTTCAAGGGAGAATTTGGGG...CCAGCTGGAAATGCTCCTGATGACTCCAGTGAACTTAGAAAGGCAAGCATCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp GCTGATGCTTGCCTTTCTAAGTTCACTGGAGTCATCAGGAGCATTTCCAGCTGGCTTGTCCTAGGAACCTaGCAAGCACATGCTTCTGTC +
Preference number: 2 (lower is better)
Translates to: ADACLSKFTGVIRSISSWLVLGT*QAHASV
Trigger: GACAGAAGCATGTGCTTGGCAGGTTCCTAGGACAAG...CCAGCTGGAAATGCTCCTGATGACTCCAGTGAACTTAGAAAGGCAAGCATCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp GCTGATGCTTGCCTTTCTAAGTTCACTGGAGTCATCAGGAGCATTTCCAGCTGGAGGGGCCTGGGAGTTTaGAGTTTTGACATCAACCTG +
Preference number: 2 (lower is better)
Translates to: ADACLSKFTGVIRSISSWRGLGV*SFDINL
Trigger: CAGGTTGATGTCAAAACTCCAAACTCCCAGGCCCCT...CCAGCTGGAAATGCTCCTGATGACTCCAGTGAACTTAGAAAGGCAAGCATCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR TCA 90 bp GCTGATGCTTGCCTTTCTAAGTTCACTGGAGTCATCAGGAGCATTTCCAGCTGGGTAAGTGATCTCTGCTaGAATACTCCACAAGGCCAG +
Preference number: 2 (lower is better)
Translates to: ADACLSKFTGVIRSISSWVSDLC*NTPQGQ
Trigger: CTGGCCTTGTGGAGTATTTCAGCAGAGATCACTTAC...CCAGCTGGAAATGCTCCTGATGACTCCAGTGAACTTAGAAAGGCAAGCATCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp CATCCTGCAACCCCAGGAGAAGATTGGGAAGATGTCTCAGACAGTGTAGATGTTAGCACAGGAGACAGCTaGTCTCATTTTACCCTCGGT +
Preference number: 2 (lower is better)
Translates to: HPATPGEDWEDVSDSVDVSTGDS*SHFTLG
Trigger: ACCGAGGGTAAAATGAGACCAGCTGTCTCCTGTGCT...AACATCTACACTGTCTGAGACATCTTCCCAATCTTCTCCTGGGGTTGCAGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp GTGGGACTGCCTTCAATACAACCCCAAGTGGCAAACTCTGTTCCTTaGTCTCCATGTCATGTTGCCACCATTAAGGTGAAGCTCACATGT +
Preference number: 2 (lower is better)
Translates to: VGLPSIQPQVANSVP*SPCHVATIKVKLTC
Trigger: ACATGTGAGCTTCACCTTAATGGTGGCAACATGACATGGAGACAAAGGAACAGAGTTTGCCACTTGGGGTTGTATTGAAGGCAGTCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR TCA 90 bp ATTGAGAGGCCCAGTTCTTATTACAGCACCAGAGAAAGACAGTTTCAGGGGCAATCCCAGACTTCTGGGTaGACCAGTGTAAGTGATCTC +
Preference number: 2 (lower is better)
Translates to: IERPSSYYSTRERQFQGQSQTSG*TSVSDL
Trigger: GAGATCACTTACACTGGTTCACCCAGAAGTCTGGGA...TTGCCCCTGAAACTGTCTTTCTCTGGTGCTGTAATAAGAACTGGGCCTCTCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp CAGGAGGATCAGGGGTTTAAAGCCATTCTTGGTGGTATATCAAGTTaGAAATGTACCTGGGCTATAAACAGGCAGGCAGGCAGACAGACA +
Preference number: 2 (lower is better)
Translates to: QEDQGFKAILGGISS*KCTWAINRQAGRQT
Trigger: TGTCTGTCTGCCTGCCTGCCTGTTTATAGCCCAGGTACATTTCAAACTTGATATACCACCAAGAATGGCTTTAAACCCCTGATCCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp GAAGGTGGACAGCTTTCCCAAGCACATGGACAGGACTTTCTTGGCTaGATGGCAGACTTACTATCCCTTCTTACTTGTTGCTGTCTTAGT +
Preference number: 2 (lower is better)
Translates to: EGGQLSQAHGQDFLG*MADLLSLLTCCCLS
Trigger: ACTAAGACAGCAACAAGTAAGAAGGGATAGTAAGTCTGCCATCAAGCCAAGAAAGTCCTGTCCATGTGCTTGGGAAAGCTGTCCACCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp CATCCTGCAACCCCAGGAGAAGATTGGGAAGATGTCTCAGACAGTGTAGATGTTGGGGATGCTTTAAAATaGCTTCAGCACTACAGCAAT +
Preference number: 2 (lower is better)
Translates to: HPATPGEDWEDVSDSVDVGDALK*LQHYSN
Trigger: ATTGCTGTAGTGCTGAAGGCATTTTAAAGCATCCCC...AACATCTACACTGTCTGAGACATCTTCCCAATCTTCTCCTGGGGTTGCAGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp GCTGATGCTTGCCTTTCTAAGTTCACTGGAGTCATCAGGAGCATTTCCAGCTGGGGCTTTTTAATGTCATaGTGCTACACAGGGATAACA +
Preference number: 2 (lower is better)
Translates to: ADACLSKFTGVIRSISSWGFLMS*CYTGIT
Trigger: TGTTATCCCTGTGTAGCAGCATGACATTAAAAAGCC...CCAGCTGGAAATGCTCCTGATGACTCCAGTGAACTTAGAAAGGCAAGCATCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp AGCACCCGGGATGCTGATTTGATTAAAAACAAAGTTGGCATCTTTAGGGACGTGGTCAGACAACTTTCCTaGAAGGTAAGTGCCTCTTGG +
Preference number: 2 (lower is better)
Translates to: STRDADLIKNKVGIFRDVVRQLS*KVSASW
Trigger: CCAAGAGGCACTTACCTTCCAGGAAAGTTGTCTGAC...CACGTCCCTAAAGATGCCAACTTTGTTTTTAATCAAATCAGCATCCCGGGTGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp GCCACAGAACTAGACAGTGGCAGATTTGCACGTCCCTTTTTGCTTTaGAGTTCACTCTTGTGTCTGTCAACAAACCAACTTACTGCTCTT +
Preference number: 2 (lower is better)
Translates to: ATELDSGRFARPFLL*SSLLCLSTNQLTAL
Trigger: AAGAGCAGTAAGTTGGTTTGTTGACAGACACAAGAGTGAACTCAAAAGCAAAAAGGGACGTGCAAATCTGCCACTGTCTAGTTCTGTGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp GTGTCTGCCACAGAACTAGACAGTGGCAGATTTGCACGTCCCTTTTaGCTTTTGAGTTCACTCTTGTGTCTGTCAACAAACCAACTTACT +
Preference number: 2 (lower is better)
Translates to: VSATELDSGRFARPF*LLSSLLCLSTNQLT
Trigger: AGTAAGTTGGTTTGTTGACAGACACAAGAGTGAACTCAAAAGCAAAAAGGGACGTGCAAATCTGCCACTGTCTAGTTCTGTGGCAGACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp ATTGAGAGGCCCAGTTCTTATTACAGCACCAGAGAAAGACAGTTTCAGGGGCAAAGACAGTGGCAGATTTaGACGTCCCTTTTTGCTTTT +
Preference number: 2 (lower is better)
Translates to: IERPSSYYSTRERQFQGQRQWQI*TSLFAF
Trigger: AAAAGCAAAAAGGGACGTGCAAATCTGCCACTGTCT...TTGCCCCTGAAACTGTCTTTCTCTGGTGCTGTAATAAGAACTGGGCCTCTCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp AGCACCCGGGATGCTGATTTGATTAAAAACAAAGTTGGCATCTTTAGGGACGTGAAAGGGCTATGGGGATaGATACCGGAAGAGAAAAAG +
Preference number: 2 (lower is better)
Translates to: STRDADLIKNKVGIFRDVKGLWG*IPEEKK
Trigger: CTTTTTCTCTTCCGGTATCCATCCCCATAGCCCTTT...CACGTCCCTAAAGATGCCAACTTTGTTTTTAATCAAATCAGCATCCCGGGTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp GTCCCTGTGTATTCAGCTTTGTGTAAAAATTTCCCAGGTGGAAAGAGTTTTAAACAACCCTGTGAAGCTTaGGGATGGAGAAGCCATCCG +
Preference number: 2 (lower is better)
Translates to: VPVYSALCKNFPGGKSFKQPCEA*GWRSHP
Trigger: CGGATGGCTTCTCCATCCCCAAGCTTCACAGGGTTG...TTTAAAACTCTTTCCACCTGGGAAATTTTTACACAAAGCTGAATACACAGGGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp GTCCCTGTGTATTCAGCTTTGTGTAAAAATTTCCCAGGTGGAAAGAGTTTTAAATCACAGAGGGCTCAATaGCTGGTCATTCCTGAGCCC +
Preference number: 2 (lower is better)
Translates to: VPVYSALCKNFPGGKSFKSQRAQ*LVIPEP
Trigger: GGGCTCAGGAATGACCAGCCATTGAGCCCTCTGTGA...TTTAAAACTCTTTCCACCTGGGAAATTTTTACACAAAGCTGAATACACAGGGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp TTCAGGTGGGTTTTCAGCTGGAGAAGAAAGTCTGTGATCTTCCAATaGAGGACAAAGACCTTTCATTATCCAGAATTGAGAGGCCCAGTT +
Preference number: 2 (lower is better)
Translates to: FRWVFSWRRKSVIFQ*RTKTFHYPELRGPV
Trigger: AACTGGGCCTCTCAATTCTGGATAATGAAAGGTCTTTGTCCTCAATTGGAAGATCACAGACTTTCTTCTCCAGCTGAAAACCCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp ATTGAGAGGCCCAGTTCTTATTACAGCACCAGAGAAAGACAGTTTCAGGGGCAACCCTGGAGCTTGTTTTaGAGTGTTTCTGTATTTTCA +
Preference number: 2 (lower is better)
Translates to: IERPSSYYSTRERQFQGQPWSLF*SVSVFS
Trigger: TGAAAATACAGAAACACTGCAAAACAAGCTCCAGGG...TTGCCCCTGAAACTGTCTTTCTCTGGTGCTGTAATAAGAACTGGGCCTCTCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp TCTCACCTCCATTTTCTGTCTACAGATATTGCTATGTTCACTACTCTTCTCTTTTGCTGCCGCTTCCTTTaGTCTTCTCCACTCTTCCAC +
Preference number: 2 (lower is better)
Translates to: SHLHFLSTDIAMFTTLLFCCRFL*SSPLFH
Trigger: GTGGAAGAGTGGAGAAGAGCAAAGGAAGCGGCAGCA...AAAGAGAAGAGTAGTGAACATAGCAATATCTGTAGACAGAAAATGGAGGTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp AGCACCCGGGATGCTGATTTGATTAAAAACAAAGTTGGCATCTTTAGGGACGTGAGCGTTTCATATGTCTaGCCACTAACAGATGTAAGC +
Preference number: 2 (lower is better)
Translates to: STRDADLIKNKVGIFRDVSVSYV*PLTDVS
Trigger: GCTTACATCTGTTAGTGGGCAGACATATGAAACGCT...CACGTCCCTAAAGATGCCAACTTTGTTTTTAATCAAATCAGCATCCCGGGTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp CTAGTTGGAAAGGCATTTGCGGTAAGAAAGCCAATGCAACAGTATCCAAGAATTGCTTTCCCAAGCACATaGACAGGACTTTCTTGGCTT +
Preference number: 2 (lower is better)
Translates to: LVGKAFAVRKPMQQYPRIAFPST*TGLSWL
Trigger: AAGCCAAGAAAGTCCTGTCCATGTGCTTGGGAAAGC...AATTCTTGGATACTGTTGCATTGGCTTTCTTACCGCAAATGCCTTTCCAACTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp CTAGTTGGAAAGGCATTTGCGGTAAGAAAGCCAATGCAACAGTATCCAAGAATTTCTCCTAGAAGAAGGTaGACAGCTTTCCCAAGCACA +
Preference number: 2 (lower is better)
Translates to: LVGKAFAVRKPMQQYPRISPRRR*TAFPST
Trigger: TGTGCTTGGGAAAGCTGTCCACCTTCTTCTAGGAGA...AATTCTTGGATACTGTTGCATTGGCTTTCTTACCGCAAATGCCTTTCCAACTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CCA 90 bp GTCCCTGTGTATTCAGCTTTGTGTAAAAATTTCCCAGGTGGAAAGAGTTTTAAATGTGAAGCTTGGGGATaGAGAAGCCATCCGGGTTAC +
Preference number: 2 (lower is better)
Translates to: VPVYSALCKNFPGGKSFKCEAWG*RSHPGY
Trigger: GTAACCCGGATGGCTTCTCCATCCCCAAGCTTCACA...TTTAAAACTCTTTCCACCTGGGAAATTTTTACACAAAGCTGAATACACAGGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR TCA 90 bp AGCACCCGGGATGCTGATTTGATTAAAAACAAAGTTGGCATCTTTAGGGACGTGCAAAAGCTATTTTCCTaGATTGTTACCAAGCATGCC +
Preference number: 2 (lower is better)
Translates to: STRDADLIKNKVGIFRDVQKLFS*IVTKHA
Trigger: GGCATGCTTGGTAACAATTCAGGAAAATAGCTTTTG...CACGTCCCTAAAGATGCCAACTTTGTTTTTAATCAAATCAGCATCCCGGGTGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR TCA 90 bp ATTGAGAGGCCCAGTTCTTATTACAGCACCAGAGAAAGACAGTTTCAGGGGCAAGCTCAGTGGCTCATATaGTTGATAACTGAAATTAGT +
Preference number: 2 (lower is better)
Translates to: IERPSSYYSTRERQFQGQAQWLI*LITEIS
Trigger: ACTAATTTCAGTTATCAATCATATGAGCCACTGAGC...TTGCCCCTGAAACTGTCTTTCTCTGGTGCTGTAATAAGAACTGGGCCTCTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp GTCCCTGTGTATTCAGCTTTGTGTAAAAATTTCCCAGGTGGAAAGAGTTTTAAACCTGCCTCTTATTGCTaGCTGATGATGGAGAAGCCA +
Preference number: 2 (lower is better)
Translates to: VPVYSALCKNFPGGKSFKPASYC*LMMEKP
Trigger: TGGCTTCTCCATCATCAGGCAGCAATAAGAGGCAGG...TTTAAAACTCTTTCCACCTGGGAAATTTTTACACAAAGCTGAATACACAGGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp GTCCCTGTGTATTCAGCTTTGTGTAAAAATTTCCCAGGTGGAAAGAGTTTTAAAGGGATAACATGTGTCTaGCACAGAACTAGACAGTGG +
Preference number: 2 (lower is better)
Translates to: VPVYSALCKNFPGGKSFKGITCV*HRTRQW
Trigger: CCACTGTCTAGTTCTGTGGCAGACACATGTTATCCC...TTTAAAACTCTTTCCACCTGGGAAATTTTTACACAAAGCTGAATACACAGGGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp TCTCACCTCCATTTTCTGTCTACAGATATTGCTATGTTCACTACTCTTCTCTTTGAGTCTATGGACTCTTaGAGTTCCCAGATACACTTC +
Preference number: 2 (lower is better)
Translates to: SHLHFLSTDIAMFTTLLFESMDS*SSQIHF
Trigger: GAAGTGTATCTGGGAACTGCAAGAGTCCATAGACTC...AAAGAGAAGAGTAGTGAACATAGCAATATCTGTAGACAGAAAATGGAGGTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp AATTTAAGGAAGCAACAGTCCCAAGAAGACATACATAATCCACACTaGATGTCAACTGAGATCAACTCAAGCCGTAGTAGGACTTCATTT +
Preference number: 2 (lower is better)
Translates to: NLRKQQSQEDIHNPH*MSTEINSSRSRTSF
Trigger: AAATGAAGTCCTACTACGGCTTGAGTTGATCTCAGTTGACATCAAGTGTGGATTATGTATGTCTTCTTGGGACTGTTGCTTCCTTAAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR GCA 90 bp GTCCCTGTGTATTCAGCTTTGTGTAAAAATTTCCCAGGTGGAAAGAGTTTTAAAAGCGTCTCCGTCATTTaGAAACACCAGTTTCTAAAG +
Preference number: 2 (lower is better)
Translates to: VPVYSALCKNFPGGKSFKSVSVI*KHQFLK
Trigger: CTTTAGAAACTGGTGTTTGCAAATGACGGAGACGCT...TTTAAAACTCTTTCCACCTGGGAAATTTTTACACAAAGCTGAATACACAGGGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 90 bp GTAGCCAATTGTTCAAATCTCACCTCCATTTTCTGTCTACAGATATaGCTATGTTCACTACTCTTCTCTTTGCTTGGACAAAATACCAGA +
Preference number: 2 (lower is better)
Translates to: VANCSNLTSIFCLQI*LCSLLFSLLGQNTR
Trigger: TCTGGTATTTTGTCCAAGCAAAGAGAAGAGTAGTGAACATAGCAATATCTGTAGACAGAAAATGGAGGTGAGATTTGAACAATTGGCTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp ACACCACTTCAGCTGCTTCCTGCCTCCGCGCTTTGCTaGCGCTTCCTTTGCTCTTCTCCACTCTTCCACCCA +
Preference number: 3 (lower is better)
Translates to: TPLQLLPASALC*RFLCSSPLFHP
Trigger: TGGGTGGAAGAGTGGAGAAGAGCAAAGGAAGCGGCAGCAAAGCGCGGAGGCAGGAAGCAGCTGAAGTGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CAA 90 bp CTCCTCCTTTTCATTCAATCCAGGGCACCAATGTGCTTTCTCCACCCTAACCCCTCCTGCCTCCGCGCTTaGCTGCCGCTTCCTTTGCTC +
Preference number: 3 (lower is better)
Translates to: LLLFIQSRAPMCFLHPNPSCLRA*LPLPLL
Trigger: GAGCAAAGGAAGCGGCAGCAAAGCGCGGAGGCAGGA...GGGGTTAGGGTGGAGAAAGCACATTGGTGCCCTGGATTGAATGAAAAGGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp CTGCTTCCTGCCTCCGCGCTTTGCTGCCGCTTCCTTTaGTCTTCTCCACTCTTCCACCCAAACCACTCATGT +
Preference number: 3 (lower is better)
Translates to: LLPASALCCRFL*SSPLFHPNHSC
Trigger: ACATGAGTGGTTTGGGTGGAAGAGTGGAGAAGAGCAAAGGAAGCGGCAGCAAAGCGCGGAGGCAGGAAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp GGGGATGGAGAAGCCATCCGGGTTACAGGACAACTGTaGGGTGACTGCTCCCAATGCACTAGCATAGCTCCT +
Preference number: 3 (lower is better)
Translates to: GDGEAIRVTGQL*GDCSQCTSIAP
Trigger: AGGAGCTATGCTAGTGCATTGGGAGCAGTCACCTCACAGTTGTCCTGTAACCCGGATGGCTTCTCCATCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp TGGGCTAGCAGTCAGACAACTTTCCTGGAAGGTAAGTaGCTCTTGGGGGTTCTCATCCTGCAACCCCAGGAG +
Preference number: 3 (lower is better)
Translates to: WASSQTTFLEGK*LLGVLILQPQE
Trigger: CTCCTGGGGTTGCAGGATGAGAACCCCCAAGAGGCACTTACCTTCCAGGAAAGTTGTCTGACTGCTAGCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp GATAACCCCAAAGCTGCTACCCCAGCCCTAGCCTCCTaGTTGGAACATCTGCTGGAGACCCAAGACAATGCT +
Preference number: 3 (lower is better)
Translates to: DNPKAATPALAS*LEHLLETQDNA
Trigger: AGCATTGTCTTGGGTCTCCAGCAGATGTTCCAACCAGGAGGCTAGGGCTGGGGTAGCAGCTTTGGGGTTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp GGAGCATTTCCAGCTGGGAGCCTGTCTAATGATGCTTaGGAAAGGTGCATTGCACACCCAGAGGTCACACAC +
Preference number: 3 (lower is better)
Translates to: GAFPAGSLSNDA*ERCIAHPEVTH
Trigger: GTGTGTGACCTCTGGGTGTGCAATGCACCTTTCCCAAGCATCATTAGACAGGCTCCCAGCTGGAAATGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp CATGGCCTCACAGAGGGCTCAATGGCTGGTCATTCCTaGGCCCTTGAAGCTTTCTTGTTAAAGGTCCAACCC +
Preference number: 3 (lower is better)
Translates to: HGLTEGSMAGHS*ALEAFLLKVQP
Trigger: GGGTTGGACCTTTAACAAGAAAGCTTCAAGGGCTCAGGAATGACCAGCCATTGAGCCCTCTGTGAGGCCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp CTCCTGCGGGTTTTCTACCTTCTTGTCCTAGGAACCTaGCAAGCACATGCTTCTGTCTCACAGGTCACAAGC +
Preference number: 3 (lower is better)
Translates to: LLRVFYLLVLGT*QAHASVSQVTS
Trigger: GCTTGTGACCTGTGAGACAGAAGCATGTGCTTGGCAGGTTCCTAGGACAAGAAGGTAGAAAACCCGCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp TCCTGGAAGGTAAGTGCCTCTTGGGGGTTCTCATCCTaGAACCCCAGGAGAAGATTGGGAAGATGTCTCAGA +
Preference number: 3 (lower is better)
Translates to: SWKVSASWGFSS*NPRRRLGRCLR
Trigger: TCTGAGACATCTTCCCAATCTTCTCCTGGGGTTGCAGGATGAGAACCCCCAAGAGGCACTTACCTTCCAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp GCAGTCAGACAACTTTCCTGGAAGGTAAGTGCCTCTTaGGGGTTCTCATCCTGCAACCCCAGGAGAAGATTG +
Preference number: 3 (lower is better)
Translates to: AVRQLSWKVSAS*GFSSCNPRRRL
Trigger: CAATCTTCTCCTGGGGTTGCAGGATGAGAACCCCCAAGAGGCACTTACCTTCCAGGAAAGTTGTCTGACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp TACTTTGGCTGTGGGCTAGCAGTCAGACAACTTTCCTaGAAGGTAAGTGCCTCTTGGGGGTTCTCATCCTGC +
Preference number: 3 (lower is better)
Translates to: YFGCGLAVRQLS*KVSASWGFSSC
Trigger: GCAGGATGAGAACCCCCAAGAGGCACTTACCTTCCAGGAAAGTTGTCTGACTGCTAGCCCACAGCCAAAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp CCAGGTATCAGACAGGTGGAAGGGATAACATGTGTCTaGCACAGAACTAGACAGTGGCAGATTTGCACGTCC +
Preference number: 3 (lower is better)
Translates to: PGIRQVEGITCV*HRTRQWQICTS
Trigger: GGACGTGCAAATCTGCCACTGTCTAGTTCTGTGGCAGACACATGTTATCCCTTCCACCTGTCTGATACCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp AGGGGATGCTTTAAAATGCCTTCAGCACTACAGCAATaGCAAGGGTTCCCACCAGCCTCAGCACCAAAGACA +
Preference number: 3 (lower is better)
Translates to: RGCFKMPSALQQ*QGFPPASAPKT
Trigger: TGTCTTTGGTGCTGAGGCTGGTGGGAACCCTTGCCATTGCTGTAGTGCTGAAGGCATTTTAAAGCATCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp TTCTTGTTAAAGGTCCAACCCTGTGAAGCTTGGGGATaGAGAAGCCATCCGGGTTACAGGACAACTGTGAGG +
Preference number: 3 (lower is better)
Translates to: FLLKVQPCEAWG*RSHPGYRTTVR
Trigger: CCTCACAGTTGTCCTGTAACCCGGATGGCTTCTCCATCCCCAAGCTTCACAGGGTTGGACCTTTAACAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp TCAACCTGGACACTGGGGAAACTACTTGACTTTGTGTaGGCTAGTCCTACCAGGTATCAGACAGGTGGAAGG +
Preference number: 3 (lower is better)
Translates to: STWTLGKLLDFV*ASPTRYQTGGR
Trigger: CCTTCCACCTGTCTGATACCTGGTAGGACTAGCTCACACAAAGTCAAGTAGTTTCCCCAGTGTCCAGGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp TGGGAAAGGTGCATTGCACACCCAGAGGTCACACACTaGAGACCTGGGGTCTGTAAGTCCAAGTTATTACCT +
Preference number: 3 (lower is better)
Translates to: WERCIAHPEVTH*RPGVCKSKLLP
Trigger: AGGTAATAACTTGGACTTACAGACCCCAGGTCTTCAGTGTGTGACCTCTGGGTGTGCAATGCACCTTTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp CTGGTTGGAACATCTGCTGGAGACCCAAGACAATGCTaGGAAGATGGGCAAGTTTCTCCTAGAAGAAGGTGG +
Preference number: 3 (lower is better)
Translates to: LVGTSAGDPRQC*EDGQVSPRRRW
Trigger: CCACCTTCTTCTAGGAGAAACTTGCCCATCTTCTCAGCATTGTCTTGGGTCTCCAGCAGATGTTCCAACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp CTAAAGACTCAGAAGGAGGCTGTCAGGCAGACCAGATaGTCAAGCCCCAGCAAGAGAAAGTGTTTCAGGATT +
Preference number: 3 (lower is better)
Translates to: LKTQKEAVRQTR*SSPSKRKCFRI
Trigger: AATCCTGAAACACTTTCTCTTGCTGGGGCTTGAGCATCTGGTCTGCCTGACAGCCTCCTTCTGAGTCTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp GAAGCTTTCTTGTTAAAGGTCCAACCCTGTGAAGCTTaGGGATGGAGAAGCCATCCGGGTTACAGGACAACT +
Preference number: 3 (lower is better)
Translates to: EAFLLKVQPCEA*GWRSHPGYRTT
Trigger: AGTTGTCCTGTAACCCGGATGGCTTCTCCATCCCCAAGCTTCACAGGGTTGGACCTTTAACAAGAAAGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp CCCAGCCCTGGAGCTTCCTGTGCTACAGACATCATATaGTTCAGGAAAACTCAGCCAATGTTCGTCCATACA +
Preference number: 3 (lower is better)
Translates to: PSPGASCATDII*FRKTQPMFVHT
Trigger: TGTATGGACGAACATTGGCTGAGTTTTCCTGAACCATATGATGTCTGTAGCACAGGAAGCTCCAGGGCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp AGAGAAAGTGTTTCAGGATTAGAGCCAGCCCAGCCCTaGAGCTTCCTGTGCTACAGACATCATATGGTTCAG +
Preference number: 3 (lower is better)
Translates to: RESVSGLEPAQP*SFLCYRHHMVQ
Trigger: CTGAACCATATGATGTCTGTAGCACAGGAAGCTCCAGGGCTGGGCTGGCTCTAATCCTGAAACACTTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp GCCTCCTTGTTTGCTAAGGGACACCGGTCACCGTGGTaGAATTTAAGGAAGCAACAGTCCCAAGAAGACATA +
Preference number: 3 (lower is better)
Translates to: ASLFAKGHRSPW*NLRKQQSQEDI
Trigger: TATGTCTTCTTGGGACTGTTGCTTCCTTAAATTTCACCACGGTGACCGGTGTCCCTTAGCAAACAAGGAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp AGATCCATTCCCACTGGAAAGCACATGCTGATCCCATaGAAACAGTTCCTGCAACCCTGCAGCCCTAACATT +
Preference number: 3 (lower is better)
Translates to: RSIPTGKHMLIP*KQFLQPCSPNI
Trigger: AATGTTAGGGCTGCAGGGTTGCAGGAACTGTTTTCATGGGATCAGCATGTGCTTTCCAGTGGGAATGGATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp GTAGGATCAGAAGTGGAGGCTCATGGTGTTGCTTTCTaGGATAGTATAGTGGACAGTCCTCAGCCTCATGTC +
Preference number: 3 (lower is better)
Translates to: VGSEVEAHGVAF*DSIVDSPQPHV
Trigger: GACATGAGGCTGAGGACTGTCCACTATACTATCTCAGAAAGCAACACCATGAGCCTCCACTTCTGATCCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp CCGTCATTCTGGGGAGACATCAGCGTTTCATATGTCTaGCCACTAACAGATGTAAGCTGTGAACTGACACTC +
Preference number: 3 (lower is better)
Translates to: PSFWGDISVSYV*PLTDVSCELTL
Trigger: GAGTGTCAGTTCACAGCTTACATCTGTTAGTGGGCAGACATATGAAACGCTGATGTCTCCCCAGAATGACGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp TCCCAGATACACTTCCCAGATACACCAGATGTACTTTaGGGACCCCTGGAGCTTGTTTTGCAGTGTTTCTGT +
Preference number: 3 (lower is better)
Translates to: SQIHFPDTPDVL*GPLELVLQCFC
Trigger: ACAGAAACACTGCAAAACAAGCTCCAGGGGTCCCCAAAGTACATCTGGTGTATCTGGGAAGTGTATCTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp TTACAGCACCAGAGAAAGACAGTTTCAGGGGCAAGCTaGCCACAGCTGTATCAAACCCTGCAACCATATTCT +
Preference number: 3 (lower is better)
Translates to: LQHQRKTVSGAS*PQLYQTLQPYS
Trigger: AGAATATGGTTGCAGGGTTTGATACAGCTGTGGCCAGCTTGCCCCTGAAACTGTCTTTCTCTGGTGCTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp TGGACAGCTTTCCCAAGCACATGGACAGGACTTTCTTaGCTTGATGGCAGACTTACTATCCCTTCTTACTTG +
Preference number: 3 (lower is better)
Translates to: WTAFPSTWTGLS*LDGRLTIPSYL
Trigger: CAAGTAAGAAGGGATAGTAAGTCTGCCATCAAGCCAAGAAAGTCCTGTCCATGTGCTTGGGAAAGCTGTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp CACCCTGCTAAGTGTTGGGGAGCTTTAATGTTCAGGTaGGTTTTCAGCTGGAGAAGAAAGTCTGTGATCTTC +
Preference number: 3 (lower is better)
Translates to: HPAKCWGALMFR*VFSWRRKSVIF
Trigger: GAAGATCACAGACTTTCTTCTCCAGCTGAAAACCCACCTGAACATTAAAGCTCCCCAACACTTAGCAGGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp AGCTTTCCCAAGCACATGGACAGGACTTTCTTGGCTTaGTGGCAGACTTACTATCCCTTCTTACTTGTTGCT +
Preference number: 3 (lower is better)
Translates to: SFPKHMDRTFLA*WQTYYPFLLVA
Trigger: AGCAACAAGTAAGAAGGGATAGTAAGTCTGCCATCAAGCCAAGAAAGTCCTGTCCATGTGCTTGGGAAAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp TTCCTTTGTCTCCATGTCATGTTGCCACCATTAAGGTaGAGCTCACATGTGTCAGTCAACATCAAGGCAGGT +
Preference number: 3 (lower is better)
Translates to: FLCLHVMLPPLR*SSHVSVNIKAG
Trigger: ACCTGCCTTGATGTTGACTGACACATGTGAGCTTCACCTTAATGGTGGCAACATGACATGGAGACAAAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp ACTCTTGATGGAGCAGGGGACTGTGTAGTTTCTAGTTaGAAAGGCATTTGCGGTAAGAAAGCCAATGCAACA +
Preference number: 3 (lower is better)
Translates to: TLDGAGDCVVSS*KGICGKKANAT
Trigger: TGTTGCATTGGCTTTCTTACCGCAAATGCCTTTCCAACTAGAAACTACACAGTCCCCTGCTCCATCAAGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp TCCATACACACTCACAGTTGTGGAGTAGACACACTGTaGACCCATGAGGAAAATGAAGAACTTCTCAGGTAC +
Preference number: 3 (lower is better)
Translates to: SIHTHSCGVDTL*THEENEELLRY
Trigger: GTACCTGAGAAGTTCTTCATTTTCCTCATGGGTCCACAGTGTGTCTACTCCACAACTGTGAGTGTGTATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp AGAAAAGAGACTAAGAAGCCTTGGTCTAAGATGACATaGCCCTGCCTCTTATTGCTGCCTGATGATGGAGAA +
Preference number: 3 (lower is better)
Translates to: RKETKKPWSKMT*PCLLLLPDDGE
Trigger: TTCTCCATCATCAGGCAGCAATAAGAGGCAGGGTCATGTCATCTTAGACCAAGGCTTCTTAGTCTCTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp GCAGGGGACTGTGTAGTTTCTAGTTGGAAAGGCATTTaGGGTAAGAAAGCCAATGCAACAGTATCCAAGAAT +
Preference number: 3 (lower is better)
Translates to: AGDCVVSSWKGI*GKKANATVSKN
Trigger: ATTCTTGGATACTGTTGCATTGGCTTTCTTACCGCAAATGCCTTTCCAACTAGAAACTACACAGTCCCCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp GTTACCAAGCATGCCCTACTAGTTAAAACGAGTCTATaGACTCTTGCAGTTCCCAGATACACTTCCCAGATA +
Preference number: 3 (lower is better)
Translates to: VTKHALLVKTSL*TLAVPRYTSQI
Trigger: TATCTGGGAAGTGTATCTGGGAACTGCAAGAGTCCATAGACTCGTTTTAACTAGTAGGGCATGCTTGGTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp GGTGTCCTTTTCACTAAGCATGGCTTTTTAATGTCATaGTGCTACACAGGGATAACATGGAAGTTTCCCAGA +
Preference number: 3 (lower is better)
Translates to: GVLFTKHGFLMS*CYTGITWKFPR
Trigger: TCTGGGAAACTTCCATGTTATCCCTGTGTAGCAGCATGACATTAAAAAGCCATGCTTAGTGAAAAGGACACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CAA 90 bp CTAGTTAGAAAAGGCCATCGCAATGAGCAAAGATCTACTGAGATTTGGGGAACTTTTACAGAGCAATGGTaGGTTTGTAGCCATCCTAAG +
Preference number: 3 (lower is better)
Translates to: LVRKGHRNEQRSTEIWGTFTEQW*VCSHPK
Trigger: CTTAGGATGGCTACAAACCAACCATTGCTCTGTAAA...AGTTCCCCAAATCTCAGTAGATCTTTGCTCATTGCGATGGCCTTTTCTAACTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CAA 90 bp CTAGTTGGAAAGGCATTTGCGGTAAGAAAGCCAATGCAACAGTATCCAAGAATTCGTCCCTTTTTGCTTTaGAGTTCACTCTTGTGTCTG +
Preference number: 3 (lower is better)
Translates to: LVGKAFAVRKPMQQYPRIRPFLL*SSLLCL
Trigger: CAGACACAAGAGTGAACTCAAAAGCAAAAAGGGACG...AATTCTTGGATACTGTTGCATTGGCTTTCTTACCGCAAATGCCTTTCCAACTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR GCA 72 bp GTCCAAGCCTCCTCAGAAAGAACCATCTACTTAATATaGAGCACCCGGGATGCTGATTTGATTAAAAACAAA +
Preference number: 3 (lower is better)
Translates to: VQASSERTIYLI*STRDADLIKNK
Trigger: TTTGTTTTTAATCAAATCAGCATCCCGGGTGCTGCATATTAAGTAGATGGTTCTTTCTGAGGAGGCTTGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CCA 72 bp GTAAGAGTCACTAAAGACAATAAGATCCATTCCCACTaGAAAGCACATGCTGATCCCATGAAAACAGTTCCT +
Preference number: 3 (lower is better)
Translates to: VRVTKDNKIHSH*KAHADPMKTVP
Trigger: AGGAACTGTTTTCATGGGATCAGCATGTGCTTTCCAGTGGGAATGGATCTTATTGTCTTTAGTGACTCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR-3UTR CAA 90 bp CTAGTTGGAAAGGCATTTGCGGTAAGAAAGCCAATGCAACAGTATCCAAGAATTATACATAATCCACACTaGATGTCAACTGAGATCAAC +
Preference number: 3 (lower is better)
Translates to: LVGKAFAVRKPMQQYPRIIHNPH*MSTEIN
Trigger: GTTGATCTCAGTTGACATCAAGTGTGGATTATGTAT...AATTCTTGGATACTGTTGCATTGGCTTTCTTACCGCAAATGCCTTTCCAACTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR TCA 72 bp AGACCTGGGGTCTGTAAGTCCAAGTTATTACCTATGTaGAATTATCAGATTAAATCCATGGTGTCCTTTTCA +
Preference number: 3 (lower is better)
Translates to: RPGVCKSKLLPM*NYQIKSMVSFS
Trigger: TGAAAAGGACACCATGGATTTAATCTGATAATTTCACATAGGTAATAACTTGGACTTACAGACCCCAGGTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp GCTGCTTCCTGCCTCCGCGCTTTGCTGCCGCTTCCTTaGCTCTTCTCCACTCTTCCACCCAAACCACTCATG +
Preference number: 4 (lower is better)
Translates to: AASCLRALLPLP*LFSTLPPKPLM
Trigger: CATGAGTGGTTTGGGTGGAAGAGTGGAGAAGAGCAAAGGAAGCGGCAGCAAAGCGCGGAGGCAGGAAGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp ATCTACACCACTTCAGCTGCTTCCTGCCTCCGCGCTTaGCTGCCGCTTCCTTTGCTCTTCTCCACTCTTCCA +
Preference number: 4 (lower is better)
Translates to: IYTTSAASCLRA*LPLPLLFSTLP
Trigger: TGGAAGAGTGGAGAAGAGCAAAGGAAGCGGCAGCAAAGCGCGGAGGCAGGAAGCAGCTGAAGTGGTGTAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp CAGTTAGCAGGTGAGGTCCACCATGGTGGAGGTGTGTaGATAGTGGCTGTAGCTATGGCAGTGAGCACAGGA +
Preference number: 4 (lower is better)
Translates to: QLAGEVHHGGGV*IVAVAMAVSTG
Trigger: TCCTGTGCTCACTGCCATAGCTACAGCCACTATCAACACACCTCCACCATGGTGGACCTCACCTGCTAACTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
CDS-3UTR TCA 90 bp GCTGATGCTTGCCTTTCTAAGTTCACTGGAGTCATCAGGAGCATTTCCAGCTGGGCAGCACAGCCAGGGTaGTGTGGCCATAGGAGAGAA +
Preference number: 4 (lower is better)
Translates to: ADACLSKFTGVIRSISSWAAQPG*CGHRRE
Trigger: TTCTCTCCTATGGCCACATCACCCTGGCTGTGCTGC...CCAGCTGGAAATGCTCCTGATGACTCCAGTGAACTTAGAAAGGCAAGCATCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
CDS-3UTR TCA 90 bp CCCCCAGAGGGCCTCTGTTCAGCTCTTAAACAACTGCAAGTCGTCCTAGGCAGGTATACAGAACAGAGATaGGTTTGTTGGAGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: PPEGLCSALKQLQVVLGRYTEQR*VCWSSG
Trigger: CCCGGAGCTCCAACAAACTCATCTCTGTTCTGTATA...CCTGCCTAGGACGACTTGCAGTTGTTTAAGAGCTGAACAGAGGCCCTCTGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp AGCAGTCAGACAACTTTCCTGGAAGGTAAGTGCCTCTaGGGGGTTCTCATCCTGCAACCCCAGGAGAAGATT +
Preference number: 4 (lower is better)
Translates to: SSQTTFLEGKCL*GVLILQPQEKI
Trigger: AATCTTCTCCTGGGGTTGCAGGATGAGAACCCCCAAGAGGCACTTACCTTCCAGGAAAGTTGTCTGACTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp CAATGTGCTTTCTCCACCCTAACCCCAAATTCTCCCTaGAACCCTAGCTATCCCATGTGTTCACCACCTCAT +
Preference number: 4 (lower is better)
Translates to: QCAFSTLTPNSP*NPSYPMCSPPH
Trigger: ATGAGGTGGTGAACACATGGGATAGCTAGGGTTCAAGGGAGAATTTGGGGTTAGGGTGGAGAAAGCACATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp GTATTGGAAGTAGTAGGGGCCTGGGAGTTTGGAGTTTaGACATCAACCTGGACACTGGGGAAACTACTTGAC +
Preference number: 4 (lower is better)
Translates to: VLEVVGAWEFGV*TSTWTLGKLLD
Trigger: GTCAAGTAGTTTCCCCAGTGTCCAGGTTGATGTCAAAACTCCAAACTCCCAGGCCCCTACTACTTCCAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp GTGAAGCTCACATGTGTCAGTCAACATCAAGGCAGGTaGTGTGCTGCATCTGCTAGTGCCGACATTGATATG +
Preference number: 4 (lower is better)
Translates to: VKLTCVSQHQGR*CAASASADIDM
Trigger: CATATCAATGTCGGCACTAGCAGATGCAGCACACAACCTGCCTTGATGTTGACTGACACATGTGAGCTTCAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
CDS-3UTR CCA 90 bp CATCCTGCAACCCCAGGAGAAGATTGGGAAGATGTCTCAGACAGTGTAGATGTTAACGGTGGCCAGAAGTaGGAACACCAGAATGATGAA +
Preference number: 4 (lower is better)
Translates to: HPATPGEDWEDVSDSVDVNGGQK*EHQNDE
Trigger: TTCATCATTCTGGTGTTCCCACTTCTGGCCACCGTT...AACATCTACACTGTCTGAGACATCTTCCCAATCTTCTCCTGGGGTTGCAGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp CAGCTTTCCCAAGCACATGGACAGGACTTTCTTGGCTaGATGGCAGACTTACTATCCCTTCTTACTTGTTGC +
Preference number: 4 (lower is better)
Translates to: QLSQAHGQDFLG*MADLLSLLTCC
Trigger: GCAACAAGTAAGAAGGGATAGTAAGTCTGCCATCAAGCCAAGAAAGTCCTGTCCATGTGCTTGGGAAAGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
CDS-3UTR TCA 90 bp CTAGTTAGAAAAGGCCATCGCAATGAGCAAAGATCTACTGAGATTTGGGGAACTTCTCCAAGGTGGACATaGTGCCCAGGAAGTAGTACA +
Preference number: 4 (lower is better)
Translates to: LVRKGHRNEQRSTEIWGTSPRWT*CPGSST
Trigger: TGTACTACTTCCTGGGCATCATGTCCACCTTGGAGA...AGTTCCCCAAATCTCAGTAGATCTTTGCTCATTGCGATGGCCTTTTCTAACTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp ACAGAACTAGACAGTGGCAGATTTGCACGTCCCTTTTaGCTTTTGAGTTCACTCTTGTGTCTGTCAACAAAC +
Preference number: 4 (lower is better)
Translates to: TELDSGRFARPF*LLSSLLCLSTN
Trigger: GTTTGTTGACAGACACAAGAGTGAACTCAAAAGCAAAAAGGGACGTGCAAATCTGCCACTGTCTAGTTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
CDS-3UTR TCA 90 bp GTCCCTGTGTATTCAGCTTTGTGTAAAAATTTCCCAGGTGGAAAGAGTTTTAAAGGGGCCTCACATACATaGAGAGCAAAGCTGTGTAGA +
Preference number: 4 (lower is better)
Translates to: VPVYSALCKNFPGGKSFKGASHT*RAKLCR
Trigger: TCTACACAGCTTTGCTCTTCATGTATGTGAGGCCCC...TTTAAAACTCTTTCCACCTGGGAAATTTTTACACAAAGCTGAATACACAGGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp GTTTTCAGCTGGAGAAGAAAGTCTGTGATCTTCCAATaGAGGACAAAGACCTTTCATTATCCAGAATTGAGA +
Preference number: 4 (lower is better)
Translates to: VFSWRRKSVIFQ*RTKTFHYPELR
Trigger: TCTCAATTCTGGATAATGAAAGGTCTTTGTCCTCAATTGGAAGATCACAGACTTTCTTCTCCAGCTGAAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp TACAGATATTGCTATGTTCACTACTCTTCTCTTTGCTaGGACAAAATACCAGACAAAAGCGATGTAAGGAAA +
Preference number: 4 (lower is better)
Translates to: YRYCYVHYSSLC*DKIPDKSDVRK
Trigger: TTTCCTTACATCGCTTTTGTCTGGTATTTTGTCCAAGCAAAGAGAAGAGTAGTGAACATAGCAATATCTGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
3UTR CAA 72 bp AACAAATGGTTGACTTGTGTCCCTGTGTATTCAGCTTaGTGTAAAAATTTCCCAGGTGGAAAGAGTTTTAAA +
Preference number: 4 (lower is better)
Translates to: NKWLTCVPVYSA*CKNFPGGKSFK
Trigger: TTTAAAACTCTTTCCACCTGGGAAATTTTTACACAAAGCTGAATACACAGGGACACAAGTCAACCATTTGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
CDS-3UTR CAA 90 bp CCCCCAGAGGGCCTCTGTTCAGCTCTTAAACAACTGCAAGTCGTCCTAGGCAGGACAGAGATGAGTTTGTaGGAGCTCCGGGTATCGATG +
Preference number: 5 (lower is better)
Translates to: PPEGLCSALKQLQVVLGRTEMSL*ELRVSM
Trigger: CATCGATACCCGGAGCTCCAACAAACTCATCTCTGT...CCTGCCTAGGACGACTTGCAGTTGTTTAAGAGCTGAACAGAGGCCCTCTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062353.12
CDS CAA 72 bp GGTGTAAGAACTGTATACAGAACAGAGATGAGTTTGTaGGAGCTCCGGGTATCGATGGCCTGGGGCCTCACA +
Preference number: 6 (lower is better)
Translates to: GVRTVYRTEMSL*ELRVSMAWGLT
Trigger: TGTGAGGCCCCAGGCCATCGATACCCGGAGCTCCAACAAACTCATCTCTGTTCTGTATACAGTTCTTACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062353.12
ENSMUST00000189174.2
CDS CAA 72 bp ATGGGTGTAAGAACTGTATACAGAACAGAGATGAGTTaGTTGGAGCTCCGGGTATCGATGGCCTGGGGCCTC +
Preference number: 6 (lower is better)
Translates to: MGVRTVYRTEMS*LELRVSMAWGL
Trigger: GAGGCCCCAGGCCATCGATACCCGGAGCTCCAACAAACTCATCTCTGTTCTGTATACAGTTCTTACACCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062353.12
ENSMUST00000189174.2
CDS CAA 90 bp GGGTTCAAGATGGGTGTAAGAACTGTATACAGAACAGAGATGAGTTaGTTGGAGCTCCGGGTATCGATGGCCTGGGGCCTCACATACATG +
Preference number: 6 (lower is better)
Translates to: GFKMGVRTVYRTEMS*LELRVSMAWGLTYM
Trigger: CATGTATGTGAGGCCCCAGGCCATCGATACCCGGAGCTCCAACAAACTCATCTCTGTTCTGTATACAGTTCTTACACCCATCTTGAACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062353.12
ENSMUST00000189174.2