Pregenerated sensors for OLFR140 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075068Ensembl transcript IDs: ENSMUST00000099757.2, ENSMUST00000111506.3, ENSMUST00000216475.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGAGATGTGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTaGTCAGGGCAGCTTGGAATGCCCAGCGGACTCAGGAATCTGGGA | + |
|
Preference number: 1 (lower is better) Translates to: AEMWRGNEGSTGLAN*SGQLGMPSGLRNLG Trigger: TCCCAGATTCCTGAGTCCGCTGGGCATTCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCACATCTCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR TCA 90 bp | GGAGCTTTAGGTCTGATGAACGTGGGCAGAGATGTGGAGGGGAAATaGAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGAAT | + |
|
Preference number: 1 (lower is better) Translates to: GALGLMNVGRDVEGK*RFNWPSKLLRAAWN Trigger: ATTCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCACATCTCTGCCCACGTTCATCAGACCTAAAGCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 90 bp | GTATCCTTGGGCTATATGGTTCTGCCTCAGCAAGTCTGTATGGTTTaGAGCTTTAGGTCTGATGAACGTGGGCAGAGATGTGGAGGGGAA | + |
|
Preference number: 1 (lower is better) Translates to: VSLGYMVLPQQVCMV*SFRSDERGQRCGGE Trigger: TTCCCCTCCACATCTCTGCCCACGTTCATCAGACCTAAAGCTCCAAACCATACAGACTTGCTGAGGCAGAACCATATAGCCCAAGGATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR TCA 90 bp | TCAGGAATCTGGGAAGATGGATGGGGAAAGAGAATCTTACCTGTATaGTTCAGGAACAGCAGGTCTAATGGAGGTGAGAGGAGAGGTGAA | + |
|
Preference number: 1 (lower is better) Translates to: SGIWEDGWGKRILPV*FRNSRSNGGERRGE Trigger: TTCACCTCTCCTCTCACCTCCATTAGACCTGCTGTTCCTGAATCATACAGGTAAGATTCTCTTTCCCCATCCATCTTCCCAGATTCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 90 bp | ATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACAGATaGGTATCCTTGGGCTATATGGTTCTGCCTCAGCAAGTCTGTATG | + |
|
Preference number: 1 (lower is better) Translates to: ILTKFLEAASKALHR*VSLGYMVLPQQVCM Trigger: CATACAGACTTGCTGAGGCAGAACCATATAGCCCAAGGATACCCATCTGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 90 bp | TCCTTATCTGACTACTCTCACAATGACAAATTCTTACCAAATTTCTaGAAGCAGCCTCAAAAGCTCTCCACAGATGGGTATCCTTGGGCT | + |
|
Preference number: 1 (lower is better) Translates to: SLSDYSHNDKFLPNF*KQPQKLSTDGYPWA Trigger: AGCCCAAGGATACCCATCTGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTGAGAGTAGTCAGATAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR GCA 90 bp | CAGCAAGTTACTAGTTGTCAACAAAGCCACTATGCTCATCACAGATaGTTAGTATCCCAGGTTAGGAGAGATTCCCTCTTAAACATAGGT | + |
|
Preference number: 1 (lower is better) Translates to: QQVTSCQQSHYAHHR*LVSQVRRDSLLNIG Trigger: ACCTATGTTTAAGAGGGAATCTCTCCTAACCTGGGATACTAAGCATCTGTGATGAGCATAGTGGCTTTGTTGACAACTAGTAACTTGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR GCA 90 bp | GTTAGGAGAGATTCCCTCTTAAACATAGGTGAGGAAGACAAAGGTTaGTCTTCTATACTCTTGAATTTGGGGAAAACTGTTATGAAGAAA | + |
|
Preference number: 1 (lower is better) Translates to: VRRDSLLNIGEEDKG*SSILLNLGKTVMKK Trigger: TTTCTTCATAACAGTTTTCCCCAAATTCAAGAGTATAGAAGAGCAACCTTTGTCTTCCTCACCTATGTTTAAGAGGGAATCTCTCCTAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGACCCACCCCTGGGCTGTaGATGCACCTAATCCTGCAG | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGPTPGL*MHLILQ Trigger: CTGCAGGATTAGGTGCATTCACAGCCCAGGGGTGGG...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGAAGAGAAGGGGGAGAATaGAGGTCCTCCTGGCTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGREGGE*RSSWLL Trigger: GAGCAGCCAGGAGGACCTCCATTCTCCCCCTTCTCT...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR GCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGACCTGGGATAGCAGGATaGTCAGAGGACTCAGCAATC | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGPGIAG*SEDSAI Trigger: GATTGCTGAGTCCTCTGAGCATCCTGCTATCCCAGG...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGAGCGGACTCAGGAATCTaGGAAGATGGATGGGGAAAG | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGADSGI*EDGWGK Trigger: CTTTCCCCATCCATCTTCCCAGATTCCTGAGTCCGC...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR GCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGAAGCAATCAGGGAAGATaGATAGGGGAAGGGAAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGSNQGR*IGEGKG Trigger: TCCCTTCCCTTCCCCTATGCATCTTCCCTGATTGCT...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | CTGTATGATTCAGGAACAGCAGGTCTAATGGAGGTGAGAGGAGAGGTGAAAAGGAGAGAAGGGGGAGAATaGAGGTCCTCCTGGCTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: LYDSGTAGLMEVRGEVKRREGGE*RSSWLL Trigger: GAGCAGCCAGGAGGACCTCCATTCTCCCCCTTCTCT...CCTTTTCACCTCTCCTCTCACCTCCATTAGACCTGCTGTTCCTGAATCATACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR GCA 90 bp | CCCAGCGGACTCAGGAATCTGGGAAGATGGATGGGGAAAGAGAATCTTACCTGTAGCAATCAGGGAAGATaGATAGGGGAAGGGAAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: PSGLRNLGRWMGKENLTCSNQGR*IGEGKG Trigger: TCCCTTCCCTTCCCCTATGCATCTTCCCTGATTGCT...ACAGGTAAGATTCTCTTTCCCCATCCATCTTCCCAGATTCCTGAGTCCGCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGACCTCTTAAACATAGGTaGGGAAGACAAAGGTTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGPLKHR*GRQRLL Trigger: GAGCAACCTTTGTCTTCCTCACCTATGTTTAAGAGG...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGACTTGATGTACCAAGGTaGGAAATAATCAGGGAGGTG | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGLDVPR*EIIREV Trigger: CACCTCCCTGATTATTTCCCACCTTGGTACATCAAG...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR GCA 90 bp | AGGGAGGTGGAAGGAGGAGGTGCTCACCATCTCAGAGGAAAAGGTGAGGGGGAAAATGCTAACCTCACTTaGTGTTTGTCAATATCCAAG | + |
|
Preference number: 2 (lower is better) Translates to: REVEGGGAHHLRGKGEGENANLT*CLSISK Trigger: CTTGGATATTGACAAACAGCAAGTGAGGTTAGCATT...TTCCCCCTCACCTTTTCCTCTGAGATGGTGAGCACCTCCTCCTTCCACCTCCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGAGCTCTTCTATACTCTTaGATTTGGGGAAAACTGTTA | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGALLYS*IWGKLL Trigger: TAACAGTTTTCCCCAAATTCAAGAGTATAGAAGAGC...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGAATGTCCATGTTGATTTaGGTACAAACAAGCTTTGTA | + |
|
Preference number: 2 (lower is better) Translates to: WRGNEGSTGLANCSGQLGMSMLI*VQTSFV Trigger: TACAAAGCTTGTTTGTACCCAAATCAACATGGACAT...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | CAGCAAGTCTGTATGGTTTGGAGCTTTAGGTCTGATGAACGTGGGCAGAGATGTTCATCTGGACCTGAGTaGTTTTTACTTGAACCGTTT | + |
|
Preference number: 2 (lower is better) Translates to: QQVCMVWSFRSDERGQRCSSGPE*FLLEPF Trigger: AAACGGTTCAAGTAAAAACCACTCAGGTCCAGATGA...ACATCTCTGCCCACGTTCATCAGACCTAAAGCTCCAAACCATACAGACTTGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | CTGTATGATTCAGGAACAGCAGGTCTAATGGAGGTGAGAGGAGAGGTGAAAAGGGAATTCTTACAGCTATaGTTTATTTCCCCAACTGGA | + |
|
Preference number: 2 (lower is better) Translates to: LYDSGTAGLMEVRGEVKREFLQL*FISPTG Trigger: TCCAGTTGGGGAAATAAATCATAGCTGTAAGAATTC...CCTTTTCACCTCTCCTCTCACCTCCATTAGACCTGCTGTTCCTGAATCATACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | CAGCAAGTCTGTATGGTTTGGAGCTTTAGGTCTGATGAACGTGGGCAGAGATGTGCCCCATACAAAATGTaGATTCTTACAGCTATGATT | + |
|
Preference number: 2 (lower is better) Translates to: QQVCMVWSFRSDERGQRCAPYKM*ILTAMI Trigger: AATCATAGCTGTAAGAATTCACATTTTGTATGGGGC...ACATCTCTGCCCACGTTCATCAGACCTAAAGCTCCAAACCATACAGACTTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | GTGGAGCAGCAAGTTACTAGTTGTCAACAAAGCCACTATGCTCATCACAGATGCTGGGGAAAACTGTTATaGAGAAACTCTAAGTGTGGA | + |
|
Preference number: 2 (lower is better) Translates to: VEQQVTSCQQSHYAHHRCWGKLL*RNSKCG Trigger: TCCACACTTAGAGTTTCTTCATAACAGTTTTCCCCA...GCATCTGTGATGAGCATAGTGGCTTTGTTGACAACTAGTAACTTGCTGCTCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACAGTGAAAAGGTTGTCCTaGGATAGCAGGATGCTCAGA | + |
|
Preference number: 2 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTVKRLS*DSRMLR Trigger: TCTGAGCATCCTGCTATCCCAGGACAACCTTTTCAC...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | GTGGAGCAGCAAGTTACTAGTTGTCAACAAAGCCACTATGCTCATCACAGATGCGCCCCATACAAAATGTaGATTCTTACAGCTATGATT | + |
|
Preference number: 2 (lower is better) Translates to: VEQQVTSCQQSHYAHHRCAPYKM*ILTAMI Trigger: AATCATAGCTGTAAGAATTCACATTTTGTATGGGGC...GCATCTGTGATGAGCATAGTGGCTTTGTTGACAACTAGTAACTTGCTGCTCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACACCTCTTAAACATAGGTaGGGAAGACAAAGGTTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTPLKHR*GRQRLL Trigger: GAGCAACCTTTGTCTTCCTCACCTATGTTTAAGAGG...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACACTTGATGTACCAAGGTaGGAAATAATCAGGGAGGTG | + |
|
Preference number: 2 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTLDVPR*EIIREV Trigger: CACCTCCCTGATTATTTCCCACCTTGGTACATCAAG...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACAAGAATCTTACCTGTATaGTTCAGGAACAGCAGGTCT | + |
|
Preference number: 2 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTRILPV*FRNSRS Trigger: AGACCTGCTGTTCCTGAATCATACAGGTAAGATTCT...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CCA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACATCATCTGGACCTGAGTaGTTTTTACTTGAACCGTTT | + |
|
Preference number: 2 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTSSGPE*FLLEPF Trigger: AAACGGTTCAAGTAAAAACCACTCAGGTCCAGATGA...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR TCA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACAGAATTCTTACAGCTATaGTTTATTTCCCCAACTGGA | + |
|
Preference number: 2 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTEFLQL*FISPTG Trigger: TCCAGTTGGGGAAATAAATCATAGCTGTAAGAATTC...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR GCA 72 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTaGTCAGGGCAGCTTGGAATGCCCAGCGGACTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: WRGNEGSTGLAN*SGQLGMPSGLR Trigger: CCTGAGTCCGCTGGGCATTCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR TCA 72 bp | GGTCTGATGAACGTGGGCAGAGATGTGGAGGGGAAATaGAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCA | + |
|
Preference number: 3 (lower is better) Translates to: GLMNVGRDVEGK*RFNWPSKLLRA Trigger: TGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCACATCTCTGCCCACGTTCATCAGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | CAGGGCAGCTTGGAATGCCCAGCGGACTCAGGAATCTaGGAAGATGGATGGGGAAAGAGAATCTTACCTGTA | + |
|
Preference number: 3 (lower is better) Translates to: QGSLECPADSGI*EDGWGKRILPV Trigger: TACAGGTAAGATTCTCTTTCCCCATCCATCTTCCCAGATTCCTGAGTCCGCTGGGCATTCCAAGCTGCCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | AGATGCATAGGGGAAGGGAAGGGAAGCTTACCTGTATaGTTAAGGACCCACAGGTATGATGAGAGAAGGGGG | + |
|
Preference number: 3 (lower is better) Translates to: RCIGEGKGSLPV*LRTHRYDERRG Trigger: CCCCCTTCTCTCATCATACCTGTGGGTCCTTAACCATACAGGTAAGCTTCCCTTCCCTTCCCCTATGCATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGGAGGTGGAAGGAGGAGGTGCTCACCATCTCAGAGGAAAAGGTGAGGGGGAACATGTCCATGTTGATTaGGGTACAAACAAGCTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: REVEGGGAHHLRGKGEGEHVHVD*GTNKLC Trigger: ACAAAGCTTGTTTGTACCCAAATCAACATGGACATG...TTCCCCCTCACCTTTTCCTCTGAGATGGTGAGCACCTCCTCCTTCCACCTCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | ATGCACCTAATCCTGCAGAGACTTGATGTACCAAGGTaGGAAATAATCAGGGAGGTGGAAGGAGGAGGTGCT | + |
|
Preference number: 3 (lower is better) Translates to: MHLILQRLDVPR*EIIREVEGGGA Trigger: AGCACCTCCTCCTTCCACCTCCCTGATTATTTCCCACCTTGGTACATCAAGTCTCTGCAGGATTAGGTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | CCTTGGGCTATATGGTTCTGCCTCAGCAAGTCTGTATaGTTTGGAGCTTTAGGTCTGATGAACGTGGGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: PWAIWFCLSKSV*FGALGLMNVGR Trigger: TCTGCCCACGTTCATCAGACCTAAAGCTCCAAACCATACAGACTTGCTGAGGCAGAACCATATAGCCCAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | AAGCAGCCTCAAAAGCTCTCCACAGATGGGTATCCTTaGGCTATATGGTTCTGCCTCAGCAAGTCTGTATGG | + |
|
Preference number: 3 (lower is better) Translates to: KQPQKLSTDGYP*AIWFCLSKSVW Trigger: CCATACAGACTTGCTGAGGCAGAACCATATAGCCCAAGGATACCCATCTGTGGAGAGCTTTTGAGGCTGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | GGCTATATGGTTCTGCCTCAGCAAGTCTGTATGGTTTaGAGCTTTAGGTCTGATGAACGTGGGCAGAGATGT | + |
|
Preference number: 3 (lower is better) Translates to: GYMVLPQQVCMV*SFRSDERGQRC Trigger: ACATCTCTGCCCACGTTCATCAGACCTAAAGCTCCAAACCATACAGACTTGCTGAGGCAGAACCATATAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | CAAAAGCTCTCCACAGATGGGTATCCTTGGGCTATATaGTTCTGCCTCAGCAAGTCTGTATGGTTTGGAGCT | + |
|
Preference number: 3 (lower is better) Translates to: QKLSTDGYPWAI*FCLSKSVWFGA Trigger: AGCTCCAAACCATACAGACTTGCTGAGGCAGAACCATATAGCCCAAGGATACCCATCTGTGGAGAGCTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CCCAGCGGACTCAGGAATCTGGGAAGATGGATGGGGAAAGAGAATCTTACCTGTCATGTCCATGTTGATTaGGGTACAAACAAGCTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: PSGLRNLGRWMGKENLTCHVHVD*GTNKLC Trigger: ACAAAGCTTGTTTGTACCCAAATCAACATGGACATG...ACAGGTAAGATTCTCTTTCCCCATCCATCTTCCCAGATTCCTGAGTCCGCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CCCAGCGGACTCAGGAATCTGGGAAGATGGATGGGGAAAGAGAATCTTACCTGTCTTTCTCTAAAACTGTaGCCTGTCTGTAGAATCTGT | + |
|
Preference number: 3 (lower is better) Translates to: PSGLRNLGRWMGKENLTCLSLKL*PVCRIC Trigger: ACAGATTCTACAGACAGGCAACAGTTTTAGAGAAAG...ACAGGTAAGATTCTCTTTCCCCATCCATCTTCCCAGATTCCTGAGTCCGCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | AAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACAGATaGGTATCCTTGGGCTATATGGTTCTGCCTCAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: KFLEAASKALHR*VSLGYMVLPQQ Trigger: TTGCTGAGGCAGAACCATATAGCCCAAGGATACCCATCTGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CCCAGCGGACTCAGGAATCTGGGAAGATGGATGGGGAAAGAGAATCTTACCTGTTGCTCTTCTATACTCTaGAATTTGGGGAAAACTGTT | + |
|
Preference number: 3 (lower is better) Translates to: PSGLRNLGRWMGKENLTCCSSIL*NLGKTV Trigger: AACAGTTTTCCCCAAATTCAAGAGTATAGAAGAGCA...ACAGGTAAGATTCTCTTTCCCCATCCATCTTCCCAGATTCCTGAGTCCGCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGTATGATTCAGGAACAGCAGGTCTAATGGAGGTGAGAGGAGAGGTGAAAAGGCTCTTTGTTGAGTCTTaGTGCTGTTTAGGTATCAGG | + |
|
Preference number: 3 (lower is better) Translates to: LYDSGTAGLMEVRGEVKRLFVES*CCLGIR Trigger: CCTGATACCTAAACAGCACAAAGACTCAACAAAGAG...CCTTTTCACCTCTCCTCTCACCTCCATTAGACCTGCTGTTCCTGAATCATACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGTATGATTCAGGAACAGCAGGTCTAATGGAGGTGAGAGGAGAGGTGAAAAGGGGTCTGAAATTCTCTTaGTTGAGTCTTTGTGCTGTT | + |
|
Preference number: 3 (lower is better) Translates to: LYDSGTAGLMEVRGEVKRGLKFS*LSLCAV Trigger: AACAGCACAAAGACTCAACAAAGAGAATTTCAGACC...CCTTTTCACCTCTCCTCTCACCTCCATTAGACCTGCTGTTCCTGAATCATACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CAGCAAGTCTGTATGGTTTGGAGCTTTAGGTCTGATGAACGTGGGCAGAGATGTTGCTCTTCTATACTCTaGAATTTGGGGAAAACTGTT | + |
|
Preference number: 3 (lower is better) Translates to: QQVCMVWSFRSDERGQRCCSSIL*NLGKTV Trigger: AACAGTTTTCCCCAAATTCAAGAGTATAGAAGAGCA...ACATCTCTGCCCACGTTCATCAGACCTAAAGCTCCAAACCATACAGACTTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CCA 72 bp | GACTACTCTCACAATGACAAATTCTTACCAAATTTCTaGAAGCAGCCTCAAAAGCTCTCCACAGATGGGTAT | + |
|
Preference number: 3 (lower is better) Translates to: DYSHNDKFLPNF*KQPQKLSTDGY Trigger: ATACCCATCTGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTGAGAGTAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACAGTAATCATGTCCATGTaGATTTGGGTACAAACAAGC | + |
|
Preference number: 3 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTVIMSM*IWVQTS Trigger: GCTTGTTTGTACCCAAATCAACATGGACATGATTAC...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACACTTTCTCTAAAACTGTaGCCTGTCTGTAGAATCTGT | + |
|
Preference number: 3 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTLSLKL*PVCRIC Trigger: ACAGATTCTACAGACAGGCAACAGTTTTAGAGAAAG...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR-3UTR CAA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACAGGTCTGAAATTCTCTTaGTTGAGTCTTTGTGCTGTT | + |
|
Preference number: 3 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTGLKFS*LSLCAV Trigger: AACAGCACAAAGACTCAACAAAGAGAATTTCAGACC...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR GCA 72 bp | CAAAATTGGTCTGAAATTCTCTTTGTTGAGTCTTTGTaGTGTTTAGGTATCAGGTATGTAGTTATGGCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: QNWSEILFVESL*CLGIRYVVMAS Trigger: TGAGGCCATAACTACATACCTGATACCTAAACAGCACAAAGACTCAACAAAGAGAATTTCAGACCAATTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR GCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGAACCCAGCCAAGCCACTaGCACCAGCACAATACAGAC | + |
|
Preference number: 4 (lower is better) Translates to: WRGNEGSTGLANCSGQLGTQPSH*HQHNTD Trigger: GTCTGTATTGTGCTGGTGGCAGTGGCTTGGCTGGGT...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR GCA 90 bp | TGGAGGGGAAATGAAGGTTCAACTGGCCTAGCAAACTGCTCAGGGCAGCTTGGACTGTTGAATGCAGGATaGCACCCAGCCAAGCCACTG | + |
|
Preference number: 4 (lower is better) Translates to: WRGNEGSTGLANCSGQLGLLNAG*HPAKPL Trigger: CAGTGGCTTGGCTGGGTGGCATCCTGCATTCAACAG...TCCAAGCTGCCCTGAGCAGTTTGCTAGGCCAGTTGAACCTTCATTTCCCCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR CCA 90 bp | CCCAGCGGACTCAGGAATCTGGGAAGATGGATGGGGAAAGAGAATCTTACCTGTTGCACCTGGGGGTTCTaGGAGAGACCCAGCATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: PSGLRNLGRWMGKENLTCCTWGF*ERPSMK Trigger: TTTCATGCTGGGTCTCTCCCAGAACCCCCAGGTGCA...ACAGGTAAGATTCTCTTTCCCCATCCATCTTCCCAGATTCCTGAGTCCGCTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR TCA 90 bp | CCCAGCGGACTCAGGAATCTGGGAAGATGGATGGGGAAAGAGAATCTTACCTGTGTTCCTCCCAATAAATaGGCCACAAAGAACTGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: PSGLRNLGRWMGKENLTCVPPNK*ATKNWA Trigger: GGCCCAGTTCTTTGTGGCTCATTTATTGGGAGGAAC...ACAGGTAAGATTCTCTTTCCCCATCCATCTTCCCAGATTCCTGAGTCCGCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR CCA 90 bp | GTGGAGCAGCAAGTTACTAGTTGTCAACAAAGCCACTATGCTCATCACAGATGCAACATCCTCTGCACCTaGGGGTTCTGGGAGAGACCC | + |
|
Preference number: 4 (lower is better) Translates to: VEQQVTSCQQSHYAHHRCNILCT*GFWERP Trigger: GGGTCTCTCCCAGAACCCCCAGGTGCAGAGGATGTT...GCATCTGTGATGAGCATAGTGGCTTTGTTGACAACTAGTAACTTGCTGCTCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR GCA 90 bp | CTGTATGATTCAGGAACAGCAGGTCTAATGGAGGTGAGAGGAGAGGTGAAAAGGATGGCTCTTCCCTCATaGAGGGAGTCAGCGATGAGT | + |
|
Preference number: 4 (lower is better) Translates to: LYDSGTAGLMEVRGEVKRMALPS*RESAMS Trigger: ACTCATCGCTGACTCCCTGCATGAGGGAAGAGCCAT...CCTTTTCACCTCTCCTCTCACCTCCATTAGACCTGCTGTTCCTGAATCATACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| 3UTR CAA 72 bp | GAAGCAGCCTCAAAAGCTCTCCACAGATGGGTATCCTaGGGCTATATGGTTCTGCCTCAGCAAGTCTGTATG | + |
|
Preference number: 4 (lower is better) Translates to: EAASKALHRWVS*GYMVLPQQVCM Trigger: CATACAGACTTGCTGAGGCAGAACCATATAGCCCAAGGATACCCATCTGTGGAGAGCTTTTGAGGCTGCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR TCA 90 bp | CTGTATGATTCAGGAACAGCAGGTCTAATGGAGGTGAGAGGAGAGGTGAAAAGGAGGACCAGAAAGAGCTaGGCTGTTGAATGCAGGATG | + |
|
Preference number: 4 (lower is better) Translates to: LYDSGTAGLMEVRGEVKRRTRKS*AVECRM Trigger: CATCCTGCATTCAACAGCTCAGCTCTTTCTGGTCCT...CCTTTTCACCTCTCCTCTCACCTCCATTAGACCTGCTGTTCCTGAATCATACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR TCA 90 bp | GTGGAGCAGCAAGTTACTAGTTGTCAACAAAGCCACTATGCTCATCACAGATGCTCAAAGTGCGCAGGATaGCAATGTACGAGGCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: VEQQVTSCQQSHYAHHRCSKCAG*QCTRQP Trigger: TGGCTGCCTCGTACATTGTCATCCTGCGCACTTTGA...GCATCTGTGATGAGCATAGTGGCTTTGTTGACAACTAGTAACTTGCTGCTCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR CCA 90 bp | CAGGTTAGGAGAGATTCCCTCTTAAACATAGGTGAGGAAGACAAAGGTTGCTCTTGCACCTGGGGGTTCTaGGAGAGACCCAGCATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: QVRRDSLLNIGEEDKGCSCTWGF*ERPSMK Trigger: TTTCATGCTGGGTCTCTCCCAGAACCCCCAGGTGCA...AGAGCAACCTTTGTCTTCCTCACCTATGTTTAAGAGGGAATCTCTCCTAACCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR GCA 90 bp | CAGCAAGTCTGTATGGTTTGGAGCTTTAGGTCTGATGAACGTGGGCAGAGATGTAGCACAATACAGACATaGCTGGTCATGGTGGTGGTA | + |
|
Preference number: 4 (lower is better) Translates to: QQVCMVWSFRSDERGQRCSTIQT*LVMVVV Trigger: TACCACCACCATGACCAGGCATGTCTGTATTGTGCT...ACATCTCTGCCCACGTTCATCAGACCTAAAGCTCCAAACCATACAGACTTGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR CCA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACAAACATCCTCTGCACCTaGGGGTTCTGGGAGAGACCC | + |
|
Preference number: 4 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTNILCT*GFWERP Trigger: GGGTCTCTCCCAGAACCCCCAGGTGCAGAGGATGTT...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR TCA 90 bp | CAGGTTAGGAGAGATTCCCTCTTAAACATAGGTGAGGAAGACAAAGGTTGCTCTAGGACCAGAAAGAGCTaGGCTGTTGAATGCAGGATG | + |
|
Preference number: 4 (lower is better) Translates to: QVRRDSLLNIGEEDKGCSRTRKS*AVECRM Trigger: CATCCTGCATTCAACAGCTCAGCTCTTTCTGGTCCT...AGAGCAACCTTTGTCTTCCTCACCTATGTTTAAGAGGGAATCTCTCCTAACCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR TCA 90 bp | CACAATGACAAATTCTTACCAAATTTCTGGAAGCAGCCTCAAAAGCTCTCCACATCAAAGTGCGCAGGATaGCAATGTACGAGGCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: HNDKFLPNFWKQPQKLSTSKCAG*QCTRQP Trigger: TGGCTGCCTCGTACATTGTCATCCTGCGCACTTTGA...TGTGGAGAGCTTTTGAGGCTGCTTCCAGAAATTTGGTAAGAATTTGTCATTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR GCA 90 bp | CAGGTTAGGAGAGATTCCCTCTTAAACATAGGTGAGGAAGACAAAGGTTGCTCTAGCACAATACAGACATaGCTGGTCATGGTGGTGGTA | + |
|
Preference number: 4 (lower is better) Translates to: QVRRDSLLNIGEEDKGCSSTIQT*LVMVVV Trigger: TACCACCACCATGACCAGGCATGTCTGTATTGTGCT...AGAGCAACCTTTGTCTTCCTCACCTATGTTTAAGAGGGAATCTCTCCTAACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS-3UTR CAA 90 bp | CTGTATGATTCAGGAACAGCAGGTCTAATGGAGGTGAGAGGAGAGGTGAAAAGGGAAAGAGCTGAGCTGTaGAATGCAGGATGCCACCCA | + |
|
Preference number: 5 (lower is better) Translates to: LYDSGTAGLMEVRGEVKRERAEL*NAGCHP Trigger: TGGGTGGCATCCTGCATTCAACAGCTCAGCTCTTTC...CCTTTTCACCTCTCCTCTCACCTCCATTAGACCTGCTGTTCCTGAATCATACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS CAA 72 bp | GTGGGGCTGAAGGTAATCGTGATAATGATGAGCATGTaGCCCCCAACAGAGACCAGGAAGACCAGCAGAAAA | + |
|
Preference number: 6 (lower is better) Translates to: VGLKVIVIMMSM*PPTETRKTSRK Trigger: TTTTCTGCTGGTCTTCCTGGTCTCTGTTGGGGGCAACATGCTCATCATTATCACGATTACCTTCAGCCCCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000099757.2 ENSMUST00000111506.3 ENSMUST00000216475.2 |
||
| CDS TCA 72 bp | AAGAGATGGCTCTTCCCTCATGCAGGGAGTCAGCGATaGGTTTGGGTGTCATACAAGAGGAATAGCAAGTAT | + |
|
Preference number: 6 (lower is better) Translates to: KRWLFPHAGSQR*VWVSYKRNSKY Trigger: ATACTTGCTATTCCTCTTGTATGACACCCAAACTCATCGCTGACTCCCTGCATGAGGGAAGAGCCATCTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099757.2 ENSMUST00000111506.3 ENSMUST00000216475.2 |
||