Pregenerated sensors for OLFR1394 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048378Ensembl transcript IDs: ENSMUST00000052668.2, ENSMUST00000216273.2
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCCTGATTCAGACTGAGGCTCAGAGCTCTCTCTTTAGCTGTAGTTaGGGTCAGCCAGCTCAGACAGATGTCACAACACAGTTTGCCTGT | + |
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Preference number: 1 (lower is better) Translates to: SLIQTEAQSSLFSCS*GQPAQTDVTTQFAC Trigger: ACAGGCAAACTGTGTTGTGACATCTGTCTGAGCTGGCTGACCTCAACTACAGCTAAAGAGAGAGCTCTGAGCCTCAGTCTGAATCAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 90 bp | CCTGGTCATAGAGCAGGGATATTTACACAAGACAGTAGCACTGACTaGCAACAGTTCCTGGGGGAAGTCCACTGCTCATTAGCTGGCCAA | + |
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Preference number: 1 (lower is better) Translates to: PGHRAGIFTQDSSTD*QQFLGEVHCSLAGQ Trigger: TTGGCCAGCTAATGAGCAGTGGACTTCCCCCAGGAACTGTTGTCAGTCAGTGCTACTGTCTTGTGTAAATATCCCTGCTCTATGACCAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 90 bp | GTTATCGGGGTCATGACCCACAGGTTGGGAACCACTGGTGTAGAGTaGGTTATTTATTCTCTCTGTACTTCCCGTGGCTTAAACTCCAGC | + |
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Preference number: 1 (lower is better) Translates to: VIGVMTHRLGTTGVE*VIYSLCTSRGLNSS Trigger: GCTGGAGTTTAAGCCACGGGAAGTACAGAGAGAATAAATAACTCACTCTACACCAGTGGTTCCCAACCTGTGGGTCATGACCCCGATAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 90 bp | AGGTTCTACTGTCCAGCTTCAGTCCCGATGACTTCAAAAGTCACTTaGGCCCATGTAATCCAAAGCAACACATTGCGACTCCATTCTCAA | + |
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Preference number: 1 (lower is better) Translates to: RFYCPASVPMTSKVT*AHVIQSNTLRLHSQ Trigger: TTGAGAATGGAGTCGCAATGTGTTGCTTTGGATTACATGGGCTCAAGTGACTTTTGAAGTCATCGGGACTGAAGCTGGACAGTAGAACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CCA 90 bp | CACATCTCAAGGAGCTTGATTCAACTTTTCAATGTGCAGATGAGTTaGGAATCGGTTTCCAGGCTTGGTTCCCTGTGCTTTCTTTGTATT | + |
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Preference number: 1 (lower is better) Translates to: HISRSLIQLFNVQMS*ESVSRLGSLCFLCI Trigger: AATACAAAGAAAGCACAGGGAACCAAGCCTGGAAACCGATTCCCAACTCATCTGCACATTGAAAAGTTGAATCAAGCTCCTTGAGATGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 90 bp | GCCAAGTACAAGGTCACAGAGTTTGCATGTAAGGTGACAAACTTTTaGGAGCATGGCTCTGACATGACAATTAACATTCTTCAGCCTATG | + |
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Preference number: 1 (lower is better) Translates to: AKYKVTEFACKVTNF*EHGSDMTINILQPM Trigger: CATAGGCTGAAGAATGTTAATTGTCATGTCAGAGCCATGCTCTCAAAAGTTTGTCACCTTACATGCAAACTCTGTGACCTTGTACTTGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CCA 90 bp | TGTGTGTGCAGAAAGCAGAAAATGAATCTAGGAATCAGTTACGTGTaGCTTTCTTACCATTTCTATGCCTTGATTCCATGCTTAAGGTAC | + |
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Preference number: 1 (lower is better) Translates to: CVCRKQKMNLGISYV*LSYHFYALIPCLRY Trigger: GTACCTTAAGCATGGAATCAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATTCATTTTCTGCTTTCTGCACACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 90 bp | GCTGTAGTTGAGGTCAGCCAGCTCAGACAGATGTCACAACACAGTTaGCCTGTCCTGCTTGTAATGTGTGACTTGGTCTCATTTCTATTG | + |
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Preference number: 2 (lower is better) Translates to: AVVEVSQLRQMSQHS*PVLLVMCDLVSFLL Trigger: CAATAGAAATGAGACCAAGTCACACATTACAAGCAGGACAGGCAAACTGTGTTGTGACATCTGTCTGAGCTGGCTGACCTCAACTACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR GCA 90 bp | TGTGCAGATGAGTTGGGAATCGGTTTCCAGGCTTGGTTCCCTGTGCTTTCTTTGTATGTCTGGTTCATGTaGTGGGAATGGAATCAAGTG | + |
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Preference number: 2 (lower is better) Translates to: CADELGIGFQAWFPVLSLYVWFM*WEWNQV Trigger: CACTTGATTCCATTCCCAGCACATGAACCAGACATA...CAAAGAAAGCACAGGGAACCAAGCCTGGAAACCGATTCCCAACTCATCTGCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCAATTTTCTGATGTTATCGGGGTCATGACCCACAGGTTGGGAACCACTGGTCTGATAAAAGCCTGCTaGTCCATTTTGTCCAGTGAC | + |
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Preference number: 2 (lower is better) Translates to: SQFSDVIGVMTHRLGTTGLIKAC*SILSSD Trigger: GTCACTGGACAAAATGGAGCAGCAGGCTTTTATCAG...ACCAGTGGTTCCCAACCTGTGGGTCATGACCCCGATAACATCAGAAAATTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGCAGATGAGTTGGGAATCGGTTTCCAGGCTTGGTTCCCTGTGCTTTCTTTGTTCATGTGCTGGGAATaGAATCAAGTGCTTTGTGCA | + |
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Preference number: 2 (lower is better) Translates to: CADELGIGFQAWFPVLSLFMCWE*NQVLCA Trigger: TGCACAAAGCACTTGATTCCATTCCCAGCACATGAA...CAAAGAAAGCACAGGGAACCAAGCCTGGAAACCGATTCCCAACTCATCTGCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 90 bp | AAGGTTCTACTGTCCAGCTTCAGTCCCGATGACTTCAAAAGTCACTaGAGCCCATGTAATCCAAAGCAACACATTGCGACTCCATTCTCA | + |
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Preference number: 2 (lower is better) Translates to: KVLLSSFSPDDFKSH*SPCNPKQHIATPFS Trigger: TGAGAATGGAGTCGCAATGTGTTGCTTTGGATTACATGGGCTCAAGTGACTTTTGAAGTCATCGGGACTGAAGCTGGACAGTAGAACCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CCA 90 bp | AATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGATTCCATCAGGGGGAGAAAGGTaGCCCAGGAAGCTAAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: NLGISYVWLSYHFYALIPSGGER*PRKLRN Trigger: GTTCCTTAGCTTCCTGGGCCACCTTTCTCCCCCTGA...TGGAATCAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 90 bp | AGTTTGCCTGTCCTGCTTGTAATGTGTGACTTGGTCTCATTTCTATaGTCATGTTACAAGGTTCTACTGTCCAGCTTCAGTCCCGATGAC | + |
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Preference number: 2 (lower is better) Translates to: SLPVLLVMCDLVSFL*SCYKVLLSSFSPDD Trigger: GTCATCGGGACTGAAGCTGGACAGTAGAACCTTGTAACATGACAATAGAAATGAGACCAAGTCACACATTACAAGCAGGACAGGCAAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR GCA 90 bp | GCACCACATCTCAAGGAGCTTGATTCAACTTTTCAATGTGCAGATGAGTTGGGAGGGAATGGAATCAAGTaGTTTGTGCATGCTAGGCAA | + |
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Preference number: 2 (lower is better) Translates to: APHLKELDSTFQCADELGGNGIK*FVHARQ Trigger: TTGCCTAGCATGCACAAAGCACTTGATTCCATTCCC...TCCCAACTCATCTGCACATTGAAAAGTTGAATCAAGCTCCTTGAGATGTGGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR TCA 90 bp | AGGAAAGATGACAGGCATCGGTTAATATGTCTGGTTCATGTGCTGGGAATGGAATTTGGATTCTCAAAATaGTGGTTCTCAGGGGGAGAA | + |
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Preference number: 2 (lower is better) Translates to: RKDDRHRLICLVHVLGMEFGFSK*WFSGGE Trigger: TTCTCCCCCTGAGAACCATCATTTTGAGAATCCAAA...TTCCATTCCCAGCACATGAACCAGACATATTAACCGATGCCTGTCATCTTTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CCA 90 bp | TACCAACTGAGCCACATGCCCAGCTTAACATGTAGCTTAGAGGAAAGGCTGTGGATTCACAGTAGCCTTTaGATTCTCAAAATGATGGTT | + |
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Preference number: 2 (lower is better) Translates to: YQLSHMPSLTCSLEERLWIHSSL*ILKMMV Trigger: AACCATCATTTTGAGAATCCAAAGGCTACTGTGAAT...CCACAGCCTTTCCTCTAAGCTACATGTTAAGCTGGGCATGTGGCTCAGTTGGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 90 bp | GAATCGGTTTCCAGGCTTGGTTCCCTGTGCTTTCTTTGTATTTGTTaGTCTGTTTTAAACAGGGCCAGCTTAGAACTTGAACTTGGAACT | + |
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Preference number: 2 (lower is better) Translates to: ESVSRLGSLCFLCIC*SVLNRASLELELGT Trigger: AGTTCCAAGTTCAAGTTCTAAGCTGGCCCTGTTTAAAACAGACAAACAAATACAAAGAAAGCACAGGGAACCAAGCCTGGAAACCGATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR TCA 90 bp | AAAATGAATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGCTCTTTAGCTGTAGTTaGGGTCAGCCAGCTCAGACA | + |
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Preference number: 2 (lower is better) Translates to: KMNLGISYVWLSYHFYALLFSCS*GQPAQT Trigger: TGTCTGAGCTGGCTGACCTCAACTACAGCTAAAGAG...CAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATTCATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR TCA 90 bp | AATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGATTCCAGGCCAGCTTAGAACTTaGACTTGGAACTCAATGTGT | + |
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Preference number: 2 (lower is better) Translates to: NLGISYVWLSYHFYALIPGQLRT*TWNSMC Trigger: ACACATTGAGTTCCAAGTTCAAGTTCTAAGCTGGCC...TGGAATCAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR TCA 90 bp | AAAATGAATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGCAGCTTCAGTCCCGATaGCTTCAAAAGTCACTTGAG | + |
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Preference number: 2 (lower is better) Translates to: KMNLGISYVWLSYHFYALQLQSR*LQKSLE Trigger: CTCAAGTGACTTTTGAAGTCATCGGGACTGAAGCTG...CAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATTCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR TCA 90 bp | AAAATGAATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGAAGGAACTCTGGGTGTaGTTTTTATCAGCAACCATG | + |
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Preference number: 2 (lower is better) Translates to: KMNLGISYVWLSYHFYALKELWV*FLSATM Trigger: CATGGTTGCTGATAAAAATCACACCCAGAGTTCCTT...CAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATTCATTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR GCA 90 bp | AATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGATTCCATTAGTTATTAGTCAATaGCAAGGAACTCTGGGTGTG | + |
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Preference number: 2 (lower is better) Translates to: NLGISYVWLSYHFYALIPLVISQ*QGTLGV Trigger: CACACCCAGAGTTCCTTGGCATTGACTAATAACTAA...TGGAATCAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 72 bp | CAGACTGAGGCTCAGAGCTCTCTCTTTAGCTGTAGTTaGGGTCAGCCAGCTCAGACAGATGTCACAACACAG | + |
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Preference number: 3 (lower is better) Translates to: QTEAQSSLFSCS*GQPAQTDVTTQ Trigger: CTGTGTTGTGACATCTGTCTGAGCTGGCTGACCTCAACTACAGCTAAAGAGAGAGCTCTGAGCCTCAGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 72 bp | TTCTCTCTGTACTTCCCGTGGCTTAAACTCCAGCTCTaGAAGATTGCCCCAATCCCTGGCGATTGTTCCCAA | + |
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Preference number: 3 (lower is better) Translates to: FSLYFPWLKLQL*KIAPIPGDCSQ Trigger: TTGGGAACAATCGCCAGGGATTGGGGCAATCTTTCAGAGCTGGAGTTTAAGCCACGGGAAGTACAGAGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CCA 72 bp | ACAACAGTTCCTGGGGGAAGTCCACTGCTCATTAGCTaGCCAAGTACAAGGTCACAGAGTTTGCATGTAAGG | + |
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Preference number: 3 (lower is better) Translates to: TTVPGGSPLLIS*PSTRSQSLHVR Trigger: CCTTACATGCAAACTCTGTGACCTTGTACTTGGCCAGCTAATGAGCAGTGGACTTCCCCCAGGAACTGTTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CAA 90 bp | AAGGTGGCCCAGGAAGCTAAGGAACCCATCTGTTACTCTCTCATCATCCTTCCAGGCATAGAGGAAGCATaGGAAAGGCAGAGAAGAATG | + |
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Preference number: 3 (lower is better) Translates to: KVAQEAKEPICYSLIILPGIEEA*ERQRRM Trigger: CATTCTTCTCTGCCTTTCCAATGCTTCCTCTATGCC...TGGAAGGATGATGAGAGAGTAACAGATGGGTTCCTTAGCTTCCTGGGCCACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CCA 72 bp | ATGCCCAGCTTAACATGTAGCTTAGAGGAAAGGCTGTaGCTGCCAATCGCAGGACGACATAAAACAGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: MPSLTCSLEERL*LPIAGRHKTEC Trigger: ACACTCTGTTTTATGTCGTCCTGCGATTGGCAGCCACAGCCTTTCCTCTAAGCTACATGTTAAGCTGGGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CAA 90 bp | TCTCAATTTTCTGATGTTATCGGGGTCATGACCCACAGGTTGGGAACCACTGGTAATCGGTTTCCAGGCTaGGTTCCCTGTGCTTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: SQFSDVIGVMTHRLGTTGNRFPG*VPCAFF Trigger: AAAGAAAGCACAGGGAACCAAGCCTGGAAACCGATT...ACCAGTGGTTCCCAACCTGTGGGTCATGACCCCGATAACATCAGAAAATTGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 72 bp | TGTCCAGCTTCAGTCCCGATGACTTCAAAAGTCACTTaGGCCCATGTAATCCAAAGCAACACATTGCGACTC | + |
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Preference number: 3 (lower is better) Translates to: CPASVPMTSKVT*AHVIQSNTLRL Trigger: GAGTCGCAATGTGTTGCTTTGGATTACATGGGCTCAAGTGACTTTTGAAGTCATCGGGACTGAAGCTGGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 72 bp | AGAGCAGGGATATTTACACAAGACAGTAGCACTGACTaGCAACAGTTCCTGGGGGAAGTCCACTGCTCATTA | + |
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Preference number: 3 (lower is better) Translates to: RAGIFTQDSSTD*QQFLGEVHCSL Trigger: TAATGAGCAGTGGACTTCCCCCAGGAACTGTTGTCAGTCAGTGCTACTGTCTTGTGTAAATATCCCTGCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 72 bp | GTCATGACCCACAGGTTGGGAACCACTGGTGTAGAGTaGGTTATTTATTCTCTCTGTACTTCCCGTGGCTTA | + |
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Preference number: 3 (lower is better) Translates to: VMTHRLGTTGVE*VIYSLCTSRGL Trigger: TAAGCCACGGGAAGTACAGAGAGAATAAATAACTCACTCTACACCAGTGGTTCCCAACCTGTGGGTCATGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CCA 72 bp | AGGAGCTTGATTCAACTTTTCAATGTGCAGATGAGTTaGGAATCGGTTTCCAGGCTTGGTTCCCTGTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: RSLIQLFNVQMS*ESVSRLGSLCF Trigger: AAAGCACAGGGAACCAAGCCTGGAAACCGATTCCCAACTCATCTGCACATTGAAAAGTTGAATCAAGCTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CCA 72 bp | TGTTATCGGGGTCATGACCCACAGGTTGGGAACCACTaGTGTAGAGTGAGTTATTTATTCTCTCTGTACTTC | + |
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Preference number: 3 (lower is better) Translates to: CYRGHDPQVGNH*CRVSYLFSLYF Trigger: GAAGTACAGAGAGAATAAATAACTCACTCTACACCAGTGGTTCCCAACCTGTGGGTCATGACCCCGATAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR GCA 72 bp | AATATGTCTGGTTCATGTGCTGGGAATGGAATCAAGTaGTTTGTGCATGCTAGGCAAGTACTCTACCAACTG | + |
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Preference number: 3 (lower is better) Translates to: NMSGSCAGNGIK*FVHARQVLYQL Trigger: CAGTTGGTAGAGTACTTGCCTAGCATGCACAAAGCACTTGATTCCATTCCCAGCACATGAACCAGACATATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CCA 72 bp | CAATGTGCAGATGAGTTGGGAATCGGTTTCCAGGCTTaGTTCCCTGTGCTTTCTTTGTATTTGTTTGTCTGT | + |
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Preference number: 3 (lower is better) Translates to: QCADELGIGFQA*FPVLSLYLFVC Trigger: ACAGACAAACAAATACAAAGAAAGCACAGGGAACCAAGCCTGGAAACCGATTCCCAACTCATCTGCACATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CAA 90 bp | CACAGAAAGGAATTAGTTATTAGTCAATGCCAAGGAACTCTGGGTGTGATTTTTCAATGTGCAGATGAGTaGGGAATCGGTTTCCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: HRKELVISQCQGTLGVIFQCADE*GIGFQA Trigger: AGCCTGGAAACCGATTCCCAACTCATCTGCACATTG...AAAAATCACACCCAGAGTTCCTTGGCATTGACTAATAACTAATTCCTTTCTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 72 bp | GTCACAACACAGTTTGCCTGTCCTGCTTGTAATGTGTaGCTTGGTCTCATTTCTATTGTCATGTTACAAGGT | + |
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Preference number: 3 (lower is better) Translates to: VTTQFACPACNV*LGLISIVMLQG Trigger: ACCTTGTAACATGACAATAGAAATGAGACCAAGTCACACATTACAAGCAGGACAGGCAAACTGTGTTGTGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR GCA 72 bp | AGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATaGCTTGATTCCATGCTTAAGGTACAAAGCCTAAGC | + |
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Preference number: 3 (lower is better) Translates to: RNQLRVAFLPFL*LDSMLKVQSLS Trigger: GCTTAGGCTTTGTACCTTAAGCATGGAATCAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CAA 90 bp | ATTAGTCAATGCCAAGGAACTCTGGGTGTGATTTTTATCAGCAACCATGGTTATATGGAATCAAGTGCTTaGTGCATGCTAGGCAAGTAC | + |
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Preference number: 3 (lower is better) Translates to: ISQCQGTLGVIFISNHGYMESSA*CMLGKY Trigger: GTACTTGCCTAGCATGCACAAAGCACTTGATTCCAT...ATAACCATGGTTGCTGATAAAAATCACACCCAGAGTTCCTTGGCATTGACTAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CAA 90 bp | AATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGATTCCAATGTCACAACACAGTTaGCCTGTCCTGCTTGTAATG | + |
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Preference number: 3 (lower is better) Translates to: NLGISYVWLSYHFYALIPMSQHS*PVLLVM Trigger: CATTACAAGCAGGACAGGCAAACTGTGTTGTGACAT...TGGAATCAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 72 bp | TGCTACTGTTATAGTGATGTAAATATCTCAATTTTCTaGTGTTATCGGGGTCATGACCCACAGGTTGGGAAC | + |
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Preference number: 3 (lower is better) Translates to: CYCYSDVNISIF*CYRGHDPQVGN Trigger: GTTCCCAACCTGTGGGTCATGACCCCGATAACATCAGAAAATTGAGATATTTACATCACTATAACAGTAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR-3UTR CAA 90 bp | AATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGATTCCACACATCTCAAGGAGCTaGATTCAACTTTTCAATGTG | + |
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Preference number: 3 (lower is better) Translates to: NLGISYVWLSYHFYALIPHISRS*IQLFNV Trigger: CACATTGAAAAGTTGAATCAAGCTCCTTGAGATGTG...TGGAATCAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR TCA 72 bp | AAGGTCACAGAGTTTGCATGTAAGGTGACAAACTTTTaGGAGCATGGCTCTGACATGACAATTAACATTCTT | + |
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Preference number: 3 (lower is better) Translates to: KVTEFACKVTNF*EHGSDMTINIL Trigger: AAGAATGTTAATTGTCATGTCAGAGCCATGCTCTCAAAAGTTTGTCACCTTACATGCAAACTCTGTGACCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR GCA 72 bp | ATGGAGTTTCACAGAAAGGAATTAGTTATTAGTCAATaGCAAGGAACTCTGGGTGTGATTTTTATCAGCAAC | + |
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Preference number: 3 (lower is better) Translates to: MEFHRKELVISQ*QGTLGVIFISN Trigger: GTTGCTGATAAAAATCACACCCAGAGTTCCTTGGCATTGACTAATAACTAATTCCTTTCTGTGAAACTCCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR TCA 90 bp | GAGGAAAGGCTGTGGCTGCCAATCGCAGGACGACATAAAACAGAGTGTCTCCTGCATAGGATGCCACAATaGCCCCAAGAGGCAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: EERLWLPIAGRHKTECLLHRMPQ*PQEAAV Trigger: TACTGCTGCCTCTTGGGGTCATTGTGGCATCCTATG...CAGGAGACACTCTGTTTTATGTCGTCCTGCGATTGGCAGCCACAGCCTTTCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR TCA 90 bp | AAGGTGGCCCAGGAAGCTAAGGAACCCATCTGTTACTCTCTCATCATCCTTCCAGGGAAGAGCAAGTGGTaGGGGCCTTCTGTTTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: KVAQEAKEPICYSLIILPGKSKW*GPSVSP Trigger: AGGGGAAACAGAAGGCCCTCACCACTTGCTCTTCCC...TGGAAGGATGATGAGAGAGTAACAGATGGGTTCCTTAGCTTCCTGGGCCACCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR GCA 90 bp | TGTGCAGATGAGTTGGGAATCGGTTTCCAGGCTTGGTTCCCTGTGCTTTCTTTGTCACACTGTCTGCCATaGCACCCATCCAGGATGCCG | + |
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Preference number: 4 (lower is better) Translates to: CADELGIGFQAWFPVLSLSHCLP*HPSRMP Trigger: CGGCATCCTGGATGGGTGGCATGGCAGACAGTGTGA...CAAAGAAAGCACAGGGAACCAAGCCTGGAAACCGATTCCCAACTCATCTGCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR CCA 90 bp | TCTCAATTTTCTGATGTTATCGGGGTCATGACCCACAGGTTGGGAACCACTGGTGGCTCTATCCCCCAGTaGTGTTCTAGCCGAGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: SQFSDVIGVMTHRLGTTGGSIPQ*CSSRGS Trigger: CGAGCCTCGGCTAGAACACCACTGGGGGATAGAGCC...ACCAGTGGTTCCCAACCTGTGGGTCATGACCCCGATAACATCAGAAAATTGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR CCA 90 bp | TGTGCAGATGAGTTGGGAATCGGTTTCCAGGCTTGGTTCCCTGTGCTTTCTTTGAGGCGTCTATCCACCTaGATGACCATCAAGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: CADELGIGFQAWFPVLSLRRLST*MTIKRR Trigger: CCTCCTCTTGATGGTCATCCAGGTGGATAGACGCCT...CAAAGAAAGCACAGGGAACCAAGCCTGGAAACCGATTCCCAACTCATCTGCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR TCA 90 bp | AGGAAAGATGACAGGCATCGGTTAATATGTCTGGTTCATGTGCTGGGAATGGAAACAGGCCGGCAAGGATaGAGCTGGACAGGGAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: RKDDRHRLICLVHVLGMETGRQG*SWTGRN Trigger: ATTCCTCCCTGTCCAGCTTCATCCTTGCCGGCCTGT...TTCCATTCCCAGCACATGAACCAGACATATTAACCGATGCCTGTCATCTTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 72 bp | GAGGTCAGCCAGCTCAGACAGATGTCACAACACAGTTaGCCTGTCCTGCTTGTAATGTGTGACTTGGTCTCA | + |
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Preference number: 4 (lower is better) Translates to: EVSQLRQMSQHS*PVLLVMCDLVS Trigger: TGAGACCAAGTCACACATTACAAGCAGGACAGGCAAACTGTGTTGTGACATCTGTCTGAGCTGGCTGACCTC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 72 bp | ACTCCAGCTCTGAAAGATTGCCCCAATCCCTGGCGATaGTTCCCAAATGAGCTAAACAGCACTTCAAACACC | + |
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Preference number: 4 (lower is better) Translates to: TPALKDCPNPWR*FPNELNSTSNT Trigger: GGTGTTTGAAGTGCTGTTTAGCTCATTTGGGAACAATCGCCAGGGATTGGGGCAATCTTTCAGAGCTGGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR TCA 90 bp | GAATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGATTCCGAAAGAGTCATAAGGTaGGTGGCCGAACAGGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: ESRNQLRVAFLPFLCLDSERVIR*VAEQAG Trigger: GCCGGCCTGTTCGGCCACTCACCTTATGACTCTTTC...GGAATCAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR CCA 90 bp | GCACCACATCTCAAGGAGCTTGATTCAACTTTTCAATGTGCAGATGAGTTGGGACGCCTGAGAGAAAGTTaGTTGCCATCTTGGGTACCA | + |
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Preference number: 4 (lower is better) Translates to: APHLKELDSTFQCADELGRLRES*LPSWVP Trigger: TGGTACCCAAGATGGCAACCAACTTTCTCTCAGGCG...TCCCAACTCATCTGCACATTGAAAAGTTGAATCAAGCTCCTTGAGATGTGGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 72 bp | CTGTCCAGCTTCAGTCCCGATGACTTCAAAAGTCACTaGAGCCCATGTAATCCAAAGCAACACATTGCGACT | + |
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Preference number: 4 (lower is better) Translates to: LSSFSPDDFKSH*SPCNPKQHIAT Trigger: AGTCGCAATGTGTTGCTTTGGATTACATGGGCTCAAGTGACTTTTGAAGTCATCGGGACTGAAGCTGGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR GCA 90 bp | CACAGAAAGGAATTAGTTATTAGTCAATGCCAAGGAACTCTGGGTGTGATTTTTGCCACCCATCCAGGATaGCGTGGCCAAGAAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: HRKELVISQCQGTLGVIFATHPG*RGQERA Trigger: TGCTCTTTCTTGGCCACGGCATCCTGGATGGGTGGC...AAAAATCACACCCAGAGTTCCTTGGCATTGACTAATAACTAATTCCTTTCTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR TCA 90 bp | AAAATGAATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGGATGAGCTTCCCGCCTaGGAGAAAGTTGGTTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: KMNLGISYVWLSYHFYALDELPA*EKVGCH Trigger: ATGGCAACCAACTTTCTCTCAGGCGGGAAGCTCATC...CAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATTCATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR TCA 90 bp | CCTCGTCTACCATGCATGAAACATGAACCCAGTCTCCAACACAACAGAAATAAACACAACATGCATAGATaGGGTCCTCAAATAGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: PRLPCMKHEPSLQHNRNKHNMHR*GPQIVR Trigger: CCTCACTATTTGAGGACCTCATCTATGCATGTTGTG...TTTATTTCTGTTGTGTTGGAGACTGGGTTCATGTTTCATGCATGGTAGACGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 72 bp | TACATAGACCAAGCTGTGCACCACATCTCAAGGAGCTaGATTCAACTTTTCAATGTGCAGATGAGTTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: YIDQAVHHISRS*IQLFNVQMSWE Trigger: TTCCCAACTCATCTGCACATTGAAAAGTTGAATCAAGCTCCTTGAGATGTGGTGCACAGCTTGGTCTATGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR GCA 90 bp | CCTCGTCTACCATGCATGAAACATGAACCCAGTCTCCAACACAACAGAAATAAACATCACCACACAACATaGATAGATGAGGTCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: PRLPCMKHEPSLQHNRNKHHHTT*IDEVLK Trigger: TTTGAGGACCTCATCTATGCATGTTGTGTGGTGATG...TTTATTTCTGTTGTGTTGGAGACTGGGTTCATGTTTCATGCATGGTAGACGAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR CCA 90 bp | ATTAGTCAATGCCAAGGAACTCTGGGTGTGATTTTTATCAGCAACCATGGTTATACCTCACAGAAGAAGTaGTCCACCTCTAGAGATCCA | + |
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Preference number: 4 (lower is better) Translates to: ISQCQGTLGVIFISNHGYTSQKK*STSRDP Trigger: TGGATCTCTAGAGGTGGACCACTTCTTCTGTGAGGT...ATAACCATGGTTGCTGATAAAAATCACACCCAGAGTTCCTTGGCATTGACTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 72 bp | GTCCTGCTTGTAATGTGTGACTTGGTCTCATTTCTATaGTCATGTTACAAGGTTCTACTGTCCAGCTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: VLLVMCDLVSFL*SCYKVLLSSFS Trigger: ACTGAAGCTGGACAGTAGAACCTTGTAACATGACAATAGAAATGAGACCAAGTCACACATTACAAGCAGGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR CCA 90 bp | CACAGAAAGGAATTAGTTATTAGTCAATGCCAAGGAACTCTGGGTGTGATTTTTTCTTCTTCAGGGCACTaGTTACCTCCCTATTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: HRKELVISQCQGTLGVIFSSSGH*LPPYSS Trigger: TGAGGAATAGGGAGGTAACCAGTGCCCTGAAGAAGA...AAAAATCACACCCAGAGTTCCTTGGCATTGACTAATAACTAATTCCTTTCTGTG 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 72 bp | CAACACAGTTTGCCTGTCCTGCTTGTAATGTGTGACTaGGTCTCATTTCTATTGTCATGTTACAAGGTTCTA | + |
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Preference number: 4 (lower is better) Translates to: QHSLPVLLVMCD*VSFLLSCYKVL Trigger: TAGAACCTTGTAACATGACAATAGAAATGAGACCAAGTCACACATTACAAGCAGGACAGGCAAACTGTGTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR CCA 90 bp | AAAATGAATCTAGGAATCAGTTACGTGTGGCTTTCTTACCATTTCTATGCCTTGAAGTGGGTTGAACATTaGGGTGACAATAGTGTAGAA | + |
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Preference number: 4 (lower is better) Translates to: KMNLGISYVWLSYHFYALKWVEH*GDNSVE Trigger: TTCTACACTATTGTCACCCCAATGTTCAACCCACTT...CAAGGCATAGAAATGGTAAGAAAGCCACACGTAACTGATTCCTAGATTCATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 72 bp | CTTTGGGATCTTAACATGACACACATTAAAAACATGTaGTATGTTTTCCGCTGTCTCTGTCCCATTGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: LWDLNMTHIKNM*YVFRCLCPIVS Trigger: ACTTACAATGGGACAGAGACAGCGGAAAACATACAACATGTTTTTAATGTGTGTCATGTTAAGATCCCAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| 3UTR CAA 72 bp | CAAACACCTGTAACATATACCACGTGTACTTGTGAATaGTGTGTGCAGAAAGCAGAAAATGAATCTAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: QTPVTYTTCTCE*CVQKAENESRN Trigger: ATTCCTAGATTCATTTTCTGCTTTCTGCACACACAATTCACAAGTACACGTGGTATATGTTACAGGTGTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS TCA 90 bp | CCCAAAGGCCAGAAGAACCAGGGAGAAGAAGAAAGAGTCATAAGGTaGGTGGCCGAACAGGCCGGCAAGGATGAAGCTGGACAGGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: PKGQKNQGEEERVIR*VAEQAGKDEAGQGG Trigger: TCCTCCCTGTCCAGCTTCATCCTTGCCGGCCTGTTCGGCCACTCACCTTATGACTCTTTCTTCTTCTCCCTGGTTCTTCTGGCCTTTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS GCA 90 bp | CACACCCACATCAATCACACTGTCTGCCATGCCACCCATCCAGGATaGCGTGGCCAAGAAAGAGCAGGCCTTCCAGTTCATCAGTACAGG | + |
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Preference number: 5 (lower is better) Translates to: HTHINHTVCHATHPG*RGQERAGLPVHQYR Trigger: CCTGTACTGATGAACTGGAAGGCCTGCTCTTTCTTGGCCACGGCATCCTGGATGGGTGGCATGGCAGACAGTGTGATTGATGTGGGTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS TCA 90 bp | GAAGATCTGAGACGCACAGCCTCCCAGCGAGATGAGCTTCCCGCCTaGGAGAAAGTTGGTTGCCATCTTGGGTACCACTGTGCATGTCAT | + |
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Preference number: 5 (lower is better) Translates to: EDLRRTASQRDELPA*EKVGCHLGYHCACH Trigger: ATGACATGCACAGTGGTACCCAAGATGGCAACCAACTTTCTCTCAGGCGGGAAGCTCATCTCGCTGGGAGGCTGTGCGTCTCAGATCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS TCA 90 bp | AAGAGGAAGCACTCAGCACCTCCTACAGTAACTACAAAGAAGATCTaGGACGCACAGCCTCCCAGCGAGATGAGCTTCCCGCCTGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: KRKHSAPPTVTTKKI*DAQPPSEMSFPPER Trigger: TCTCTCAGGCGGGAAGCTCATCTCGCTGGGAGGCTGTGCGTCTCAGATCTTCTTTGTAGTTACTGTAGGAGGTGCTGAGTGCTTCCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS CCA 90 bp | TGGGGTGACAATAGTGTAGAAGATGGAGGTGGCTCTATCCCCCAGTaGTGTTCTAGCCGAGGCTCGCTGCATGTAGCTAAATATGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: WGDNSVEDGGGSIPQ*CSSRGSLHVAKYGS Trigger: GGAGCCATATTTAGCTACATGCAGCGAGCCTCGGCTAGAACACCACTGGGGGATAGAGCCACCTCCATCTTCTACACTATTGTCACCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS-3UTR CAA 90 bp | GCACCACATCTCAAGGAGCTTGATTCAACTTTTCAATGTGCAGATGAGTTGGGACCGCCTGAGAGAAAGTaGGTTGCCATCTTGGGTACC | + |
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Preference number: 5 (lower is better) Translates to: APHLKELDSTFQCADELGPPERK*VAILGT Trigger: GGTACCCAAGATGGCAACCAACTTTCTCTCAGGCGG...TCCCAACTCATCTGCACATTGAAAAGTTGAATCAAGCTCCTTGAGATGTGGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS-3UTR CAA 90 bp | ATTAGTCAATGCCAAGGAACTCTGGGTGTGATTTTTATCAGCAACCATGGTTATCTGAGAGAAAGTTGGTaGCCATCTTGGGTACCACTG | + |
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Preference number: 5 (lower is better) Translates to: ISQCQGTLGVIFISNHGYLRESW*PSWVPL Trigger: CAGTGGTACCCAAGATGGCAACCAACTTTCTCTCAG...ATAACCATGGTTGCTGATAAAAATCACACCCAGAGTTCCTTGGCATTGACTAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216273.2 |
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| CDS TCA 72 bp | AGACGCACAGCCTCCCAGCGAGATGAGCTTCCCGCCTaGGAGAAAGTTGGTTGCCATCTTGGGTACCACTGT | + |
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Preference number: 6 (lower is better) Translates to: RRTASQRDELPA*EKVGCHLGYHC Trigger: ACAGTGGTACCCAAGATGGCAACCAACTTTCTCTCAGGCGGGAAGCTCATCTCGCTGGGAGGCTGTGCGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS CAA 90 bp | GACGCACAGCCTCCCAGCGAGATGAGCTTCCCGCCTGAGAGAAAGTaGGTTGCCATCTTGGGTACCACTGTGCATGTCATAGTCAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: DAQPPSEMSFPPERK*VAILGTTVHVIVKS Trigger: GGACTTGACTATGACATGCACAGTGGTACCCAAGATGGCAACCAACTTTCTCTCAGGCGGGAAGCTCATCTCGCTGGGAGGCTGTGCGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS TCA 72 bp | AGTCATAAGGTGAGTGGCCGAACAGGCCGGCAAGGATaGAGCTGGACAGGGAGGAATGATTCCAGAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SHKVSGRTGRQG*SWTGRNDSRAP Trigger: AGGAGCTCTGGAATCATTCCTCCCTGTCCAGCTTCATCCTTGCCGGCCTGTTCGGCCACTCACCTTATGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS CCA 72 bp | TCACACTGTCTGCCATGCCACCCATCCAGGATGCCGTaGCCAAGAAAGAGCAGGCCTTCCAGTTCATCAGTA | + |
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Preference number: 6 (lower is better) Translates to: SHCLPCHPSRMP*PRKSRPSSSSV Trigger: TACTGATGAACTGGAAGGCCTGCTCTTTCTTGGCCACGGCATCCTGGATGGGTGGCATGGCAGACAGTGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS TCA 72 bp | CAAAGAAGATCTGAGACGCACAGCCTCCCAGCGAGATaGGCTTCCCGCCTGAGAGAAAGTTGGTTGCCATCT | + |
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Preference number: 6 (lower is better) Translates to: QRRSETHSLPAR*ASRLRESWLPS Trigger: AGATGGCAACCAACTTTCTCTCAGGCGGGAAGCTCATCTCGCTGGGAGGCTGTGCGTCTCAGATCTTCTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS TCA 72 bp | CACTCAGCACCTCCTACAGTAACTACAAAGAAGATCTaGGACGCACAGCCTCCCAGCGAGATGAGCTTCCCG | + |
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Preference number: 6 (lower is better) Translates to: HSAPPTVTTKKI*DAQPPSEMSFP Trigger: CGGGAAGCTCATCTCGCTGGGAGGCTGTGCGTCTCAGATCTTCTTTGTAGTTACTGTAGGAGGTGCTGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS CAA 72 bp | CCTCCCAGCGAGATGAGCTTCCCGCCTGAGAGAAAGTaGGTTGCCATCTTGGGTACCACTGTGCATGTCATA | + |
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Preference number: 6 (lower is better) Translates to: PPSEMSFPPERK*VAILGTTVHVI Trigger: TATGACATGCACAGTGGTACCCAAGATGGCAACCAACTTTCTCTCAGGCGGGAAGCTCATCTCGCTGGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS CCA 72 bp | AATAGTGTAGAAGATGGAGGTGGCTCTATCCCCCAGTaGTGTTCTAGCCGAGGCTCGCTGCATGTAGCTAAA | + |
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Preference number: 6 (lower is better) Translates to: NSVEDGGGSIPQ*CSSRGSLHVAK Trigger: TTTAGCTACATGCAGCGAGCCTCGGCTAGAACACCACTGGGGGATAGAGCCACCTCCATCTTCTACACTATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS CAA 72 bp | ATGAGCTTCCCGCCTGAGAGAAAGTTGGTTGCCATCTaGGGTACCACTGTGCATGTCATAGTCAAGTCCATG | + |
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Preference number: 6 (lower is better) Translates to: MSFPPERKLVAI*GTTVHVIVKSM Trigger: CATGGACTTGACTATGACATGCACAGTGGTACCCAAGATGGCAACCAACTTTCTCTCAGGCGGGAAGCTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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| CDS TCA 72 bp | GAGGCAGCAGTAACATCACCACACAACATGCATAGATaGGGTCCTCAAATAGTGAGGTGTCTGCACAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: EAAVTSPHNMHR*GPQIVRCLHRR Trigger: TCTCCTGTGCAGACACCTCACTATTTGAGGACCTCATCTATGCATGTTGTGTGGTGATGTTACTGCTGCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052668.2 ENSMUST00000216273.2 |
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