RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1392 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000101750

Ensembl transcript IDs: ENSMUST00000189851.3, ENSMUST00000214170.2, ENSMUST00000214598.2, ENSMUST00000215861.2, ENSMUST00000217275.2

Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACTTCTGTGTGGAGGACTTAATTGTGTCCTTCTACGATGTGGAATaGAGGCATCAAACTCAGATCCTCAGGGTTGGCCACAAGTGCCTT +
Preference number: 1 (lower is better)
Translates to: HFCVEDLIVSFYDVE*RHQTQILRVGHKCL
Trigger: AAGGCACTTGTGGCCAACCCTGAGGATCTGAGTTTGATGCCTGCATTCCACATCGTAGAAGGACACAATTAAGTCCTCCACACAGAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR GCA 90 bp CATTTTCACAGGTGCTCACAATCCACCTCTCCCAGGCTCCTTCTGTaGAAAGTTATATCTACGTCTGCATTTATCCTTGCTGAGCAGCAA +
Preference number: 1 (lower is better)
Translates to: HFHRCSQSTSPRLLL*KVISTSAFILAEQQ
Trigger: TTGCTGCTCAGCAAGGATAAATGCAGACGTAGATATAACTTTGCACAGAAGGAGCCTGGGAGAGGTGGATTGTGAGCACCTGTGAAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR GCA 90 bp TTGAGTGCTGCCATTCATAATTTAAATTCCTCTGACACTCAGACTTaGCAAGAACCCAGCCCATTTTCACAGGTGCTCACAATCCACCTC +
Preference number: 1 (lower is better)
Translates to: LSAAIHNLNSSDTQT*QEPSPFSQVLTIHL
Trigger: GAGGTGGATTGTGAGCACCTGTGAAAATGGGCTGGGTTCTTGGCAAGTCTGAGTGTCAGAGGAATTTAAATTATGAATGGCAGCACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR TCA 90 bp AACCCTATGGCTGCTGGGGAATGTTTGGTTTGGTTTCAAGTTTTGTaGTTTATTTGCTTTACACACACACACACACACACACACACACAC +
Preference number: 1 (lower is better)
Translates to: NPMAAGECLVWFQVL*FICFTHTHTHTHTH
Trigger: GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGCAAATAAATCACAAAACTTGAAACCAAACCAAACATTCCCCAGCAGCCATAGGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR CCA 90 bp CACTCCAGCTCCCAAACAAGGAAGGCATTAAAACCCTATGGCTGCTaGGGAATGTTTGGTTTGGTTTCAAGTTTTGTGATTTATTTGCTT +
Preference number: 1 (lower is better)
Translates to: HSSSQTRKALKPYGC*GMFGLVSSFVIYLL
Trigger: AAGCAAATAAATCACAAAACTTGAAACCAAACCAAACATTCCCCAGCAGCCATAGGGTTTTAATGCCTTCCTTGTTTGGGAGCTGGAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR TCA 90 bp TCCCCATTCGCCTCACTGACAGGGAAGGAATCTGGCCAGTTTTTAAGGCAGATGTATCCTACATGGAGCTaGGGCTCCACACCCAAGCAC +
Preference number: 2 (lower is better)
Translates to: SPFASLTGKESGQFLRQMYPTWS*GSTPKH
Trigger: GTGCTTGGGTGTGGAGCCTCAGCTCCATGTAGGATA...CATCTGCCTTAAAAACTGGCCAGATTCCTTCCCTGTCAGTGAGGCGAATGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR TCA 90 bp TTCACATGGTACACAGGGCAGCTCTGCTCACGATCTGCTTCTTTCTTTCACACATATCCTACATGGAGCTaGGGCTCCACACCCAAGCAC +
Preference number: 2 (lower is better)
Translates to: FTWYTGQLCSRSASFFHTYPTWS*GSTPKH
Trigger: GTGCTTGGGTGTGGAGCCTCAGCTCCATGTAGGATA...TGTGTGAAAGAAAGAAGCAGATCGTGAGCAGAGCTGCCCTGTGTACCATGTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp GCCTTGGGTCACAGCGTCCACTGTAGGACACAACATGGGGATCTGACTTTGAGTGGCATTAAAACCCTATaGCTGCTGGGGAATGTTTGG +
Preference number: 2 (lower is better)
Translates to: ALGHSVHCRTQHGDLTLSGIKTL*LLGNVW
Trigger: CCAAACATTCCCCAGCAGCCATAGGGTTTTAATGCC...ACTCAAAGTCAGATCCCCATGTTGTGTCCTACAGTGGACGCTGTGACCCAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR GCA 90 bp TTGGGTCACAGCGTCCACTGTAGGACACAACATGGGGATCTGACTTTGAGTGCTTCTGACACTCAGACTTaGCAAGAACCCAGCCCATTT +
Preference number: 2 (lower is better)
Translates to: LGHSVHCRTQHGDLTLSASDTQT*QEPSPF
Trigger: AAATGGGCTGGGTTCTTGGCAAGTCTGAGTGTCAGA...AGCACTCAAAGTCAGATCCCCATGTTGTGTCCTACAGTGGACGCTGTGACCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR GCA 90 bp GTTCTGCTGGGAGAGATTTGTTGCTTGACTGCAGCAGAAATGTTTCTGCCTTCTGCCCATTTTCACAGGTaGTCACAATCCACCTCTCCC +
Preference number: 2 (lower is better)
Translates to: VLLGEICCLTAAEMFLPSAHFHR*SQSTSP
Trigger: GGGAGAGGTGGATTGTGAGCACCTGTGAAAATGGGC...AGAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR GCA 90 bp GAATGGTGTAAACTCATTTTCCCCATTCGCCTCACTGACAGGGAAGGAATCTGGTCTGACACTCAGACTTaGCAAGAACCCAGCCCATTT +
Preference number: 2 (lower is better)
Translates to: EWCKLIFPIRLTDREGIWSDTQT*QEPSPF
Trigger: AAATGGGCTGGGTTCTTGGCAAGTCTGAGTGTCAGA...CCAGATTCCTTCCCTGTCAGTGAGGCGAATGGGGAAAATGAGTTTACACCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR TCA 90 bp GCCTCACTGACAGGGAAGGAATCTGGCCAGTTTTTAAGGCAGATGCTAATAGTTAGTGCCTTAATCCTCTaGGCATTTTGCCATCCTAGG +
Preference number: 2 (lower is better)
Translates to: ASLTGKESGQFLRQMLIVSALIL*AFCHPR
Trigger: CCTAGGATGGCAAAATGCTCAGAGGATTAAGGCACT...AACTATTAGCATCTGCCTTAAAAACTGGCCAGATTCCTTCCCTGTCAGTGAGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR TCA 90 bp ACACACACACACACACACACACACACACTTCTGTGTGGAGGACTTAATTGTGTCAGTGCCTTAATCCTCTaGGCATTTTGCCATCCTAGG +
Preference number: 2 (lower is better)
Translates to: THTHTHTHTLLCGGLNCVSALIL*AFCHPR
Trigger: CCTAGGATGGCAAAATGCTCAGAGGATTAAGGCACT...GACACAATTAAGTCCTCCACACAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR GCA 90 bp GCCTCACTGACAGGGAAGGAATCTGGCCAGTTTTTAAGGCAGATGCTAATAGTTTCTGACACTCAGACTTaGCAAGAACCCAGCCCATTT +
Preference number: 2 (lower is better)
Translates to: ASLTGKESGQFLRQMLIVSDTQT*QEPSPF
Trigger: AAATGGGCTGGGTTCTTGGCAAGTCTGAGTGTCAGA...AACTATTAGCATCTGCCTTAAAAACTGGCCAGATTCCTTCCCTGTCAGTGAGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp GTGATATCCTACATGGAGCTGAGGCTCCACACCCAAGCACATGCAGGTAACCCTGGTCTTCTATTTTTGTaGACAGTTACATGCATGTAC +
Preference number: 2 (lower is better)
Translates to: VISYMELRLHTQAHAGNPGLLFL*TVTCMY
Trigger: GTACATGCATGTAACTGTCCACAAAAATAGAAGACC...AGGGTTACCTGCATGTGCTTGGGTGTGGAGCCTCAGCTCCATGTAGGATATCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp GTTCTGCTGGGAGAGATTTGTTGCTTGACTGCAGCAGAAATGTTTCTGCCTTCTGGCATTAAAACCCTATaGCTGCTGGGGAATGTTTGG +
Preference number: 2 (lower is better)
Translates to: VLLGEICCLTAAEMFLPSGIKTL*LLGNVW
Trigger: CCAAACATTCCCCAGCAGCCATAGGGTTTTAATGCC...AGAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR TCA 90 bp GGAGGACTTAATTGTGTCCTTCTACGATGTGGAATGCAGGCATCAAACTCAGATAGTGCCTTAATCCTCTaGGCATTTTGCCATCCTAGG +
Preference number: 2 (lower is better)
Translates to: GGLNCVLLRCGMQASNSDSALIL*AFCHPR
Trigger: CCTAGGATGGCAAAATGCTCAGAGGATTAAGGCACT...ATCTGAGTTTGATGCCTGCATTCCACATCGTAGAAGGACACAATTAAGTCCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp GTGATATCCTACATGGAGCTGAGGCTCCACACCCAAGCACATGCAGGTAACCCTTGTTTTTCCCACTCATaGAACTACTCAGAATATGAA +
Preference number: 2 (lower is better)
Translates to: VISYMELRLHTQAHAGNPCFSHS*NYSEYE
Trigger: TTCATATTCTGAGTAGTTCCATGAGTGGGAAAAACA...AGGGTTACCTGCATGTGCTTGGGTGTGGAGCCTCAGCTCCATGTAGGATATCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp TCCCCATTCGCCTCACTGACAGGGAAGGAATCTGGCCAGTTTTTAAGGCAGATGGGTCTTCTATTTTTGTaGACAGTTACATGCATGTAC +
Preference number: 2 (lower is better)
Translates to: SPFASLTGKESGQFLRQMGLLFL*TVTCMY
Trigger: GTACATGCATGTAACTGTCCACAAAAATAGAAGACC...CATCTGCCTTAAAAACTGGCCAGATTCCTTCCCTGTCAGTGAGGCGAATGGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp AAAGGAGAGATAATCAGAGTGAACTCAAGCCCTCTGCCTTGGGTCACAGCGTCCTGTTTTTCCCACTCATaGAACTACTCAGAATATGAA +
Preference number: 2 (lower is better)
Translates to: KGEIIRVNSSPLPWVTASCFSHS*NYSEYE
Trigger: TTCATATTCTGAGTAGTTCCATGAGTGGGAAAAACA...GGACGCTGTGACCCAAGGCAGAGGGCTTGAGTTCACTCTGATTATCTCTCCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp TTCACATGGTACACAGGGCAGCTCTGCTCACGATCTGCTTCTTTCTTTCACACAGATAGGAAGAAGGAATaGGGGTTGTATTTGATCAAA +
Preference number: 2 (lower is better)
Translates to: FTWYTGQLCSRSASFFHTDRKKE*GLYLIK
Trigger: TTTGATCAAATACAACCCCCATTCCTTCTTCCTATC...TGTGTGAAAGAAAGAAGCAGATCGTGAGCAGAGCTGCCCTGTGTACCATGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR CAA 90 bp CCAGTTTTTAAGGCAGATGCTAATAGTTCTGCTGGGAGAGATTTGTaGCTTGACTGCAGCAGAAATGTTTCTGCCTTCTTCTCTAAGATG +
Preference number: 2 (lower is better)
Translates to: PVFKADANSSAGRDL*LDCSRNVSAFFSKM
Trigger: CATCTTAGAGAAGAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAACTATTAGCATCTGCCTTAAAAACTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR GCA 90 bp CCTGCTCAAATGATAAGTAGTAGCCTTTCCCTTTTTATGGTTAACTTTCTTACATCTGACACTCAGACTTaGCAAGAACCCAGCCCATTT +
Preference number: 2 (lower is better)
Translates to: PAQMISSSLSLFMVNFLTSDTQT*QEPSPF
Trigger: AAATGGGCTGGGTTCTTGGCAAGTCTGAGTGTCAGA...TGTAAGAAAGTTAACCATAAAAAGGGAAAGGCTACTACTTATCATTTGAGCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp CCTGCTCAAATGATAAGTAGTAGCCTTTCCCTTTTTATGGTTAACTTTCTTACAGATACATTAGGAAAGTaGGGTGATATCCTACATGGA +
Preference number: 2 (lower is better)
Translates to: PAQMISSSLSLFMVNFLTDTLGK*GDILHG
Trigger: TCCATGTAGGATATCACCCCACTTTCCTAATGTATC...TGTAAGAAAGTTAACCATAAAAAGGGAAAGGCTACTACTTATCATTTGAGCAGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CCA 90 bp CTGCTGGGGAATGTTTGGTTTGGTTTCAAGTTTTGTGATTTATTTGCTTTACACTGTTTTTCCCACTCATaGAACTACTCAGAATATGAA +
Preference number: 2 (lower is better)
Translates to: LLGNVWFGFKFCDLFALHCFSHS*NYSEYE
Trigger: TTCATATTCTGAGTAGTTCCATGAGTGGGAAAAACA...GTGTAAAGCAAATAAATCACAAAACTTGAAACCAAACCAAACATTCCCCAGCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR TCA 72 bp AGATCCTCAGGGTTGGCCACAAGTGCCTTAATCCTCTaGGCATTTTGCCATCCTAGGTCTGGTTTTGTTGTT +
Preference number: 3 (lower is better)
Translates to: RSSGLATSALIL*AFCHPRSGFVV
Trigger: AACAACAAAACCAGACCTAGGATGGCAAAATGCTCAGAGGATTAAGGCACTTGTGGCCAACCCTGAGGATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR CCA 72 bp ACTGATGTTAGACAAGGTGAGGATACATTAGGAAAGTaGGGTGATATCCTACATGGAGCTGAGGCTCCACAC +
Preference number: 3 (lower is better)
Translates to: TDVRQGEDTLGK*GDILHGAEAPH
Trigger: GTGTGGAGCCTCAGCTCCATGTAGGATATCACCCCACTTTCCTAATGTATCCTCACCTTGTCTAACATCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR CCA 72 bp CTCCAGCTCCCAAACAAGGAAGGCATTAAAACCCTATaGCTGCTGGGGAATGTTTGGTTTGGTTTCAAGTTT +
Preference number: 3 (lower is better)
Translates to: LQLPNKEGIKTL*LLGNVWFGFKF
Trigger: AAACTTGAAACCAAACCAAACATTCCCCAGCAGCCATAGGGTTTTAATGCCTTCCTTGTTTGGGAGCTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR GCA 72 bp GCCATTCATAATTTAAATTCCTCTGACACTCAGACTTaGCAAGAACCCAGCCCATTTTCACAGGTGCTCACA +
Preference number: 3 (lower is better)
Translates to: AIHNLNSSDTQT*QEPSPFSQVLT
Trigger: TGTGAGCACCTGTGAAAATGGGCTGGGTTCTTGGCAAGTCTGAGTGTCAGAGGAATTTAAATTATGAATGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CAA 90 bp TTCACATGGTACACAGGGCAGCTCTGCTCACGATCTGCTTCTTTCTTTCACACAGTTTTGGTTTGCTGTTaGGTCTTCTATTTTTGTGGA +
Preference number: 3 (lower is better)
Translates to: FTWYTGQLCSRSASFFHTVLVCC*VFYFCG
Trigger: TCCACAAAAATAGAAGACCAAACAGCAAACCAAAAC...TGTGTGAAAGAAAGAAGCAGATCGTGAGCAGAGCTGCCCTGTGTACCATGTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR GCA 72 bp GCTAATAGTTCTGCTGGGAGAGATTTGTTGCTTGACTaGAGCAGAAATGTTTCTGCCTTCTTCTCTAAGATG +
Preference number: 3 (lower is better)
Translates to: ANSSAGRDLLLD*SRNVSAFFSKM
Trigger: CATCTTAGAGAAGAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAACTATTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CAA 90 bp GCCTCACTGACAGGGAAGGAATCTGGCCAGTTTTTAAGGCAGATGCTAATAGTTGTTTTGGTTTGCTGTTaGGTCTTCTATTTTTGTGGA +
Preference number: 3 (lower is better)
Translates to: ASLTGKESGQFLRQMLIVVLVCC*VFYFCG
Trigger: TCCACAAAAATAGAAGACCAAACAGCAAACCAAAAC...AACTATTAGCATCTGCCTTAAAAACTGGCCAGATTCCTTCCCTGTCAGTGAGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CAA 90 bp GTTCTGCTGGGAGAGATTTGTTGCTTGACTGCAGCAGAAATGTTTCTGCCTTCTGTTTTGGTTTGCTGTTaGGTCTTCTATTTTTGTGGA +
Preference number: 3 (lower is better)
Translates to: VLLGEICCLTAAEMFLPSVLVCC*VFYFCG
Trigger: TCCACAAAAATAGAAGACCAAACAGCAAACCAAAAC...AGAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR TCA 72 bp TTTCTGCCTTCTTCTCTAAGATGGAAAATTAACCGATaGTTCAAATTCACATGGTACACAGGGCAGCTCTGC +
Preference number: 3 (lower is better)
Translates to: FLPSSLRWKINR*FKFTWYTGQLC
Trigger: GCAGAGCTGCCCTGTGTACCATGTGAATTTGAATCATCGGTTAATTTTCCATCTTAGAGAAGAAGGCAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR-3UTR CAA 90 bp GACTTAATTGTGTCCTTCTACGATGTGGAATGCAGGCATCAAACTCAGATCCTCGTTTTGGTTTGCTGTTaGGTCTTCTATTTTTGTGGA +
Preference number: 3 (lower is better)
Translates to: DLIVSFYDVECRHQTQILVLVCC*VFYFCG
Trigger: TCCACAAAAATAGAAGACCAAACAGCAAACCAAAAC...GAGGATCTGAGTTTGATGCCTGCATTCCACATCGTAGAAGGACACAATTAAGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR TCA 72 bp GCTGCTGGGGAATGTTTGGTTTGGTTTCAAGTTTTGTaGTTTATTTGCTTTACACACACACACACACACACA +
Preference number: 3 (lower is better)
Translates to: AAGECLVWFQVL*FICFTHTHTHT
Trigger: TGTGTGTGTGTGTGTGTGTGTAAAGCAAATAAATCACAAAACTTGAAACCAAACCAAACATTCCCCAGCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR TCA 72 bp CAATTTCACGGGATTCTGATAGTTGAATTAAACAGATaGCGAGGAGTGAAATGGAACCCCAAATCAACTTTG +
Preference number: 3 (lower is better)
Translates to: QFHGILIVELNR*RGVKWNPKSTL
Trigger: CAAAGTTGATTTGGGGTTCCATTTCACTCCTCGTCATCTGTTTAATTCAACTATCAGAATCCCGTGAAATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp GAACCCAGCCCATTTTCACAGGTGCTCACAATCCACCTCTCCCAGGCTCCTTCTTTCGGGAGAGAGCGATaGTGGCAGTGTTCCCAAAGA +
Preference number: 4 (lower is better)
Translates to: EPSPFSQVLTIHLSQAPSFGRER*WQCSQR
Trigger: TCTTTGGGAACACTGCCATCATCGCTCTCTCCCGAA...AGAAGGAGCCTGGGAGAGGTGGATTGTGAGCACCTGTGAAAATGGGCTGGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp GCCTTGGGTCACAGCGTCCACTGTAGGACACAACATGGGGATCTGACTTTGAGTAGAGAACGGGGTGCATaGTGTTCATGTAGTGCAGTG +
Preference number: 4 (lower is better)
Translates to: ALGHSVHCRTQHGDLTLSRERGA*CSCSAV
Trigger: CACTGCACTACATGAACATCATGCACCCCGTTCTCT...ACTCAAAGTCAGATCCCCATGTTGTGTCCTACAGTGGACGCTGTGACCCAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR CCA 90 bp AAAGGAGAGATAATCAGAGTGAACTCAAGCCCTCTGCCTTGGGTCACAGCGTCCGGAGCACACTCTCTGTaGATCCCAGAGCAAGAGTTA +
Preference number: 4 (lower is better)
Translates to: KGEIIRVNSSPLPWVTASGAHSL*IPEQEL
Trigger: TAACTCTTGCTCTGGGATCCACAGAGAGTGTGCTCC...GGACGCTGTGACCCAAGGCAGAGGGCTTGAGTTCACTCTGATTATCTCTCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR CCA 90 bp ACATTAGGAAAGTGGGGTGATATCCTACATGGAGCTGAGGCTCCACACCCAAGCGGAGCACACTCTCTGTaGATCCCAGAGCAAGAGTTA +
Preference number: 4 (lower is better)
Translates to: TLGKWGDILHGAEAPHPSGAHSL*IPEQEL
Trigger: TAACTCTTGCTCTGGGATCCACAGAGAGTGTGCTCC...GCTTGGGTGTGGAGCCTCAGCTCCATGTAGGATATCACCCCACTTTCCTAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp AGCTCCCAAACAAGGAAGGCATTAAAACCCTATGGCTGCTGGGGAATGTTTGGTTTCGGGAGAGAGCGATaGTGGCAGTGTTCCCAAAGA +
Preference number: 4 (lower is better)
Translates to: SSQTRKALKPYGCWGMFGFGRER*WQCSQR
Trigger: TCTTTGGGAACACTGCCATCATCGCTCTCTCCCGAA...ACCAAACATTCCCCAGCAGCCATAGGGTTTTAATGCCTTCCTTGTTTGGGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp GCCTCACTGACAGGGAAGGAATCTGGCCAGTTTTTAAGGCAGATGCTAATAGTTTTCGGGAGAGAGCGATaGTGGCAGTGTTCCCAAAGA +
Preference number: 4 (lower is better)
Translates to: ASLTGKESGQFLRQMLIVFGRER*WQCSQR
Trigger: TCTTTGGGAACACTGCCATCATCGCTCTCTCCCGAA...AACTATTAGCATCTGCCTTAAAAACTGGCCAGATTCCTTCCCTGTCAGTGAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp GAATGGTGTAAACTCATTTTCCCCATTCGCCTCACTGACAGGGAAGGAATCTGGAGAGAACGGGGTGCATaGTGTTCATGTAGTGCAGTG +
Preference number: 4 (lower is better)
Translates to: EWCKLIFPIRLTDREGIWRERGA*CSCSAV
Trigger: CACTGCACTACATGAACATCATGCACCCCGTTCTCT...CCAGATTCCTTCCCTGTCAGTGAGGCGAATGGGGAAAATGAGTTTACACCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp TTCACATGGTACACAGGGCAGCTCTGCTCACGATCTGCTTCTTTCTTTCACACAAGAGAACGGGGTGCATaGTGTTCATGTAGTGCAGTG +
Preference number: 4 (lower is better)
Translates to: FTWYTGQLCSRSASFFHTRERGA*CSCSAV
Trigger: CACTGCACTACATGAACATCATGCACCCCGTTCTCT...TGTGTGAAAGAAAGAAGCAGATCGTGAGCAGAGCTGCCCTGTGTACCATGTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR CCA 90 bp TTCACATGGTACACAGGGCAGCTCTGCTCACGATCTGCTTCTTTCTTTCACACAGGAGCACACTCTCTGTaGATCCCAGAGCAAGAGTTA +
Preference number: 4 (lower is better)
Translates to: FTWYTGQLCSRSASFFHTGAHSL*IPEQEL
Trigger: TAACTCTTGCTCTGGGATCCACAGAGAGTGTGCTCC...TGTGTGAAAGAAAGAAGCAGATCGTGAGCAGAGCTGCCCTGTGTACCATGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp ACACACACACACACACACACACACACACTTCTGTGTGGAGGACTTAATTGTGTCCCAGAGCAAGAGTTATaGAGAGCTGAGACACACACC +
Preference number: 4 (lower is better)
Translates to: THTHTHTHTLLCGGLNCVPEQEL*RAETHT
Trigger: GGTGTGTGTCTCAGCTCTTCATAACTCTTGCTCTGG...GACACAATTAAGTCCTCCACACAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp ACACACACACACACACACACACACACACTTCTGTGTGGAGGACTTAATTGTGTCAGAGAACGGGGTGCATaGTGTTCATGTAGTGCAGTG +
Preference number: 4 (lower is better)
Translates to: THTHTHTHTLLCGGLNCVRERGA*CSCSAV
Trigger: CACTGCACTACATGAACATCATGCACCCCGTTCTCT...GACACAATTAAGTCCTCCACACAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR CCA 90 bp GCCTCACTGACAGGGAAGGAATCTGGCCAGTTTTTAAGGCAGATGCTAATAGTTGGAGCACACTCTCTGTaGATCCCAGAGCAAGAGTTA +
Preference number: 4 (lower is better)
Translates to: ASLTGKESGQFLRQMLIVGAHSL*IPEQEL
Trigger: TAACTCTTGCTCTGGGATCCACAGAGAGTGTGCTCC...AACTATTAGCATCTGCCTTAAAAACTGGCCAGATTCCTTCCCTGTCAGTGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR CAA 72 bp AAGGCAGATGCTAATAGTTCTGCTGGGAGAGATTTGTaGCTTGACTGCAGCAGAAATGTTTCTGCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: KADANSSAGRDL*LDCSRNVSAFF
Trigger: GAAGAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAACTATTAGCATCTGCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR CAA 72 bp CAGATGCTAATAGTTCTGCTGGGAGAGATTTGTTGCTaGACTGCAGCAGAAATGTTTCTGCCTTCTTCTCTA +
Preference number: 4 (lower is better)
Translates to: QMLIVLLGEICC*TAAEMFLPSSL
Trigger: TAGAGAAGAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAACTATTAGCATCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
3UTR CAA 72 bp TTTAAGGCAGATGCTAATAGTTCTGCTGGGAGAGATTaGTTGCTTGACTGCAGCAGAAATGTTTCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: FKADANSSAGRD*LLDCSRNVSAF
Trigger: GAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAACTATTAGCATCTGCCTTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR TCA 90 bp TTGGTTTCAAGTTTTGTGATTTATTTGCTTTACACACACACACACACACACACATTCGGGAGAGAGCGATaGTGGCAGTGTTCCCAAAGA +
Preference number: 4 (lower is better)
Translates to: LVSSFVIYLLYTHTHTHTFGRER*WQCSQR
Trigger: TCTTTGGGAACACTGCCATCATCGCTCTCTCCCGAA...TGTGTGTGTGTGTGTGTGTGTGTAAAGCAAATAAATCACAAAACTTGAAACCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR CAA 90 bp TCCCCATTCGCCTCACTGACAGGGAAGGAATCTGGCCAGTTTTTAAGGCAGATGCTGGCCACAAACATCTaGGCCTCTGTTCCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: SPFASLTGKESGQFLRQMLATNI*ASVPPV
Trigger: CACAGGAGGAACAGAGGCCAAGATGTTTGTGGCCAG...CATCTGCCTTAAAAACTGGCCAGATTCCTTCCCTGTCAGTGAGGCGAATGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS-3UTR CAA 90 bp GTTCTGCTGGGAGAGATTTGTTGCTTGACTGCAGCAGAAATGTTTCTGCCTTCTCTGGCCACAAACATCTaGGCCTCTGTTCCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: VLLGEICCLTAAEMFLPSLATNI*ASVPPV
Trigger: CACAGGAGGAACAGAGGCCAAGATGTTTGTGGCCAG...AGAAGGCAGAAACATTTCTGCTGCAGTCAAGCAACAAATCTCTCCCAGCAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS CAA 90 bp AGCATGGCAGGCACTGCAACAATCACTGCTCTGGCCACAAACATCTaGGCCTCTGTTCCTCCTGTGTCCTGGCAGGCCAACTTGAGGAAG +
Preference number: 6 (lower is better)
Translates to: SMAGTATITALATNI*ASVPPVSWQANLRK
Trigger: CTTCCTCAAGTTGGCCTGCCAGGACACAGGAGGAACAGAGGCCAAGATGTTTGTGGCCAGAGCAGTGATTGTTGCAGTGCCTGCCATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000189851.3
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS TCA 72 bp GGGTGTGCAGTTGAAGGTCCATTCGGGAGAGAGCGATaGTGGCAGTGTTCCCAAAGAGAGTTAGGGAGTAGA +
Preference number: 6 (lower is better)
Translates to: GCAVEGPFGRER*WQCSQRELGSR
Trigger: TCTACTCCCTAACTCTCTTTGGGAACACTGCCATCATCGCTCTCTCCCGAATGGACCTTCAACTGCACACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000189851.3
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2
CDS CAA 72 bp ATGTCCACAGAGTGGCATGGCCATCATGAGGCCTGTTaGAATCAGAGAGTTCAAGAAGCCTCCTACCCAGGA +
Preference number: 6 (lower is better)
Translates to: MSTEWHGHHEAC*NQRVQEASYPG
Trigger: TCCTGGGTAGGAGGCTTCTTGAACTCTCTGATTCAAACAGGCCTCATGATGGCCATGCCACTCTGTGGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000189851.3
ENSMUST00000214170.2
ENSMUST00000214598.2
ENSMUST00000215861.2
ENSMUST00000217275.2