RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1390 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045421

Ensembl transcript IDs: ENSMUST00000062719.2, ENSMUST00000215014.2

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATGCTAGGAATCTGGAAGGCACTGCCATCAGGATAATGCTTCTCTaGTTCCCACGATGGCCTAGGAACTGCCTCCTTTCTACAAGAGGA +
Preference number: 1 (lower is better)
Translates to: HARNLEGTAIRIMLL*FPRWPRNCLLSTRG
Trigger: TCCTCTTGTAGAAAGGAGGCAGTTCCTAGGCCATCGTGGGAAGCAGAGAAGCATTATCCTGATGGCAGTGCCTTCCAGATTCCTAGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR TCA 90 bp CACCAAGCGGCATTTCTGAGGTGCTTTGCACACCTGAGGAAACCATaGGACACACCCCTCCCATTACAGAATGCCTCCCTAATAATTTGC +
Preference number: 1 (lower is better)
Translates to: HQAAFLRCFAHLRKP*DTPLPLQNASLIIC
Trigger: GCAAATTATTAGGGAGGCATTCTGTAATGGGAGGGGTGTGTCTCATGGTTTCCTCAGGTGTGCAAAGCACCTCAGAAATGCCGCTTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR GCA 90 bp AACATTATCATCTTCCCACCACCAAGCGGCATTTCTGAGGTGCTTTaGACACCTGAGGAAACCATGAGACACACCCCTCCCATTACAGAA +
Preference number: 1 (lower is better)
Translates to: NIIIFPPPSGISEVL*TPEETMRHTPPITE
Trigger: TTCTGTAATGGGAGGGGTGTGTCTCATGGTTTCCTCAGGTGTGCAAAGCACCTCAGAAATGCCGCTTGGTGGTGGGAAGATGATAATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR CCA 90 bp CTGGAAGGCACTGCCATCAGGATAATGCTTCTCTGCTTCCCACGATaGCCTAGGAACTGCCTCCTTTCTACAAGAGGAGACAATATACAT +
Preference number: 1 (lower is better)
Translates to: LEGTAIRIMLLCFPR*PRNCLLSTRGDNIH
Trigger: ATGTATATTGTCTCCTCTTGTAGAAAGGAGGCAGTTCCTAGGCCATCGTGGGAAGCAGAGAAGCATTATCCTGATGGCAGTGCCTTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR GCA 90 bp TGCACACCTGAGGAAACCATGAGACACACCCCTCCCATTACAGAATaGCTCCCTAATAATTTGCATGCTGCCTCAAGTAGAAAAGCAACC +
Preference number: 1 (lower is better)
Translates to: CTPEETMRHTPPITE*LPNNLHAASSRKAT
Trigger: GGTTGCTTTTCTACTTGAGGCAGCATGCAAATTATTAGGGAGGCATTCTGTAATGGGAGGGGTGTGTCTCATGGTTTCCTCAGGTGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR TCA 90 bp CTGGGTTTTGGTTTATTCTCTAGTTTCTCCAGTCTCTCACTTTGGTaGACATTATCATCTTCCCACCACCAAGCGGCATTTCTGAGGTGC +
Preference number: 1 (lower is better)
Translates to: LGFGLFSSFSSLSLW*TLSSSHHQAAFLRC
Trigger: GCACCTCAGAAATGCCGCTTGGTGGTGGGAAGATGATAATGTTCACCAAAGTGAGAGACTGGAGAAACTAGAGAATAAACCAAAACCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR CAA 90 bp ACCATGAGACACACCCCTCCCATTACAGAATGCCTCCCTAATAATTaGCATGCTGCCTCAAGTAGAAAAGCAACCTTCATATCTGGCCTC +
Preference number: 2 (lower is better)
Translates to: TMRHTPPITECLPNN*HAASSRKATFISGL
Trigger: GAGGCCAGATATGAAGGTTGCTTTTCTACTTGAGGCAGCATGCAAATTATTAGGGAGGCATTCTGTAATGGGAGGGGTGTGTCTCATGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR-3UTR TCA 90 bp CATGGTACAAAATCGACTCTAGCTCTTTGTTTCATGTGGACTATAGACACTGAAGCCCAAGAGGTCTGTTaGTGCTCATTTTGTACTAGC +
Preference number: 2 (lower is better)
Translates to: HGTKSTLALCFMWTIDTEAQEVC*CSFCTS
Trigger: GCTAGTACAAAATGAGCATCAACAGACCTCTTGGGC...TTCAGTGTCTATAGTCCACATGAAACAAAGAGCTAGAGTCGATTTTGTACCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR GCA 72 bp ATCTTCCCACCACCAAGCGGCATTTCTGAGGTGCTTTaGACACCTGAGGAAACCATGAGACACACCCCTCCC +
Preference number: 3 (lower is better)
Translates to: IFPPPSGISEVL*TPEETMRHTPP
Trigger: GGGAGGGGTGTGTCTCATGGTTTCCTCAGGTGTGCAAAGCACCTCAGAAATGCCGCTTGGTGGTGGGAAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR TCA 72 bp GCATTTCTGAGGTGCTTTGCACACCTGAGGAAACCATaGGACACACCCCTCCCATTACAGAATGCCTCCCTA +
Preference number: 3 (lower is better)
Translates to: AFLRCFAHLRKP*DTPLPLQNASL
Trigger: TAGGGAGGCATTCTGTAATGGGAGGGGTGTGTCTCATGGTTTCCTCAGGTGTGCAAAGCACCTCAGAAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR GCA 72 bp AATCTGGAAGGCACTGCCATCAGGATAATGCTTCTCTaGTTCCCACGATGGCCTAGGAACTGCCTCCTTTCT +
Preference number: 3 (lower is better)
Translates to: NLEGTAIRIMLL*FPRWPRNCLLS
Trigger: AGAAAGGAGGCAGTTCCTAGGCCATCGTGGGAAGCAGAGAAGCATTATCCTGATGGCAGTGCCTTCCAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR CCA 72 bp ACTGCCATCAGGATAATGCTTCTCTGCTTCCCACGATaGCCTAGGAACTGCCTCCTTTCTACAAGAGGAGAC +
Preference number: 3 (lower is better)
Translates to: TAIRIMLLCFPR*PRNCLLSTRGD
Trigger: GTCTCCTCTTGTAGAAAGGAGGCAGTTCCTAGGCCATCGTGGGAAGCAGAGAAGCATTATCCTGATGGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR-3UTR CAA 90 bp ATAGGGCATTCTGCACAGCATCATGCTAGGAATCTGGAAGGCACTGCCATCAGGATCGACTCTAGCTCTTaGTTTCATGTGGACTATAGA +
Preference number: 3 (lower is better)
Translates to: IGHSAQHHARNLEGTAIRIDSSS*FHVDYR
Trigger: TCTATAGTCCACATGAAACAAAGAGCTAGAGTCGAT...CCTGATGGCAGTGCCTTCCAGATTCCTAGCATGATGCTGTGCAGAATGCCCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR TCA 72 bp TACAAAGCAAGGAAACACCAGGCCCAAGAGGTCTGTTaGTGCTCATTTTGTACTAGCTGTTTTGCAAGGACA +
Preference number: 3 (lower is better)
Translates to: YKARKHQAQEVC*CSFCTSCFART
Trigger: TGTCCTTGCAAAACAGCTAGTACAAAATGAGCATCAACAGACCTCTTGGGCCTGGTGTTTCCTTGCTTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR CCA 72 bp CTACAAGAGGAGACAATATACATTCTCCAAGCACCATaGTACAAAATCGACTCTAGCTCTTTGTTTCATGTG +
Preference number: 3 (lower is better)
Translates to: LQEETIYILQAP*YKIDSSSLFHV
Trigger: CACATGAAACAAAGAGCTAGAGTCGATTTTGTACCATGGTGCTTGGAGAATGTATATTGTCTCCTCTTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR TCA 72 bp AAAAGCAACCTTCATATCTGGCCTCTAGGTGCTCCATaGAACACCATTAATTATTATTTGCTTATGTTCTCC +
Preference number: 3 (lower is better)
Translates to: KSNLHIWPLGAP*NTINYYLLMFS
Trigger: GGAGAACATAAGCAAATAATAATTAATGGTGTTTCATGGAGCACCTAGAGGCCAGATATGAAGGTTGCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CCA 90 bp ATAGGGCATTCTGCACAGCATCATGCTAGGAATCTGGAAGGCACTGCCATCAGGGGTCGTGTAGTGCAGTaGGCGGCACACAGCAACATA +
Preference number: 4 (lower is better)
Translates to: IGHSAQHHARNLEGTAIRGRVVQ*AAHSNI
Trigger: TATGTTGCTGTGTGCCGCCCACTGCACTACACGACC...CCTGATGGCAGTGCCTTCCAGATTCCTAGCATGATGCTGTGCAGAATGCCCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR TCA 90 bp ATAGGGCATTCTGCACAGCATCATGCTAGGAATCTGGAAGGCACTGCCATCAGGAGAAGGAGTTCCAGTTaGGGGAAATCAGAGAAACCC +
Preference number: 4 (lower is better)
Translates to: IGHSAQHHARNLEGTAIRRRSSS*GKSEKP
Trigger: GGGTTTCTCTGATTTCCCTCAACTGGAACTCCTTCT...CCTGATGGCAGTGCCTTCCAGATTCCTAGCATGATGCTGTGCAGAATGCCCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR GCA 90 bp GAGATCTCCACTTCCAACTACAAAGCAAGGAAACACCAGGCCCAAGAGGTCTGTCCACAAACTTCCCCTTaGTCTCAGAATAGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: EISTSNYKARKHQAQEVCPQTSP*SQNRCP
Trigger: AGGGCACCTATTCTGAGAGCAAGGGGAAGTTTGTGG...ACAGACCTCTTGGGCCTGGTGTTTCCTTGCTTTGTAGTTGGAAGTGGAGATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR TCA 90 bp ATAGGGCATTCTGCACAGCATCATGCTAGGAATCTGGAAGGCACTGCCATCAGGCCGAGCATCCAGTTGTaGAAGAATAATGATAGTGGA +
Preference number: 4 (lower is better)
Translates to: IGHSAQHHARNLEGTAIRPSIQL*KNNDSG
Trigger: TCCACTATCATTATTCTTTCACAACTGGATGCTCGG...CCTGATGGCAGTGCCTTCCAGATTCCTAGCATGATGCTGTGCAGAATGCCCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CCA 90 bp TACAAAGCGTTTCAAGAGATCTCCACTTCCAACTACAAAGCAAGGAAACACCAGGCTGGGGCACAATGCTaGTGGTATAGCACAGGTCCA +
Preference number: 4 (lower is better)
Translates to: YKAFQEISTSNYKARKHQAGAQC*WYSTGP
Trigger: TGGACCTGTGCTATACCACCAGCATTGTGCCCCAGC...CTGGTGTTTCCTTGCTTTGTAGTTGGAAGTGGAGATCTCTTGAAACGCTTTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CCA 90 bp TCTCCACTTCCAACTACAAAGCAAGGAAACACCAGGCCCAAGAGGTCTGTTGATGCACACTCTCTGTGGTaGCTAAAGCAAGGAAAAGGA +
Preference number: 4 (lower is better)
Translates to: SPLPTTKQGNTRPKRSVDAHSLW*LKQGKG
Trigger: TCCTTTTCCTTGCTTTAGCCACCACAGAGAGTGTGC...ATCAACAGACCTCTTGGGCCTGGTGTTTCCTTGCTTTGTAGTTGGAAGTGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR GCA 90 bp TACAAAGCGTTTCAAGAGATCTCCACTTCCAACTACAAAGCAAGGAAACACCAGGAAGCTGGGGCACAATaGTGGTGGTATAGCACAGGT +
Preference number: 4 (lower is better)
Translates to: YKAFQEISTSNYKARKHQEAGAQ*WWYSTG
Trigger: ACCTGTGCTATACCACCAGCATTGTGCCCCAGCTTC...CTGGTGTTTCCTTGCTTTGTAGTTGGAAGTGGAGATCTCTTGAAACGCTTTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CCA 90 bp ATAATGCTTCTCTGCTTCCCACGATGGCCTAGGAACTGCCTCCTTTCTACAAGAGGACCACAAACATTTTaGCTCCTGTTCCTTCTGTGT +
Preference number: 4 (lower is better)
Translates to: IMLLCFPRWPRNCLLSTRGPQTF*LLFLLC
Trigger: ACACAGAAGGAACAGGAGCCAAAATGTTTGTGGTCC...TCTTGTAGAAAGGAGGCAGTTCCTAGGCCATCGTGGGAAGCAGAGAAGCATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CCA 90 bp TACAAAGCGTTTCAAGAGATCTCCACTTCCAACTACAAAGCAAGGAAACACCAGACCCTGCCATTGACTTaGTCTTCAGCACTGCCTGAG +
Preference number: 4 (lower is better)
Translates to: YKAFQEISTSNYKARKHQTLPLT*SSALPE
Trigger: CTCAGGCAGTGCTGAAGACCAAGTCAATGGCAGGGT...CTGGTGTTTCCTTGCTTTGTAGTTGGAAGTGGAGATCTCTTGAAACGCTTTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CCA 90 bp CCTAGGAACTGCCTCCTTTCTACAAGAGGAGACAATATACATTCTCCAAGCACCGTTCTGTCATATCCCTaGAGGTTAATCAGAAGCTGG +
Preference number: 4 (lower is better)
Translates to: PRNCLLSTRGDNIHSPSTVLSYP*RLIRSW
Trigger: CCAGCTTCTGATTAACCTCCAGGGATATGACAGAAC...GGTGCTTGGAGAATGTATATTGTCTCCTCTTGTAGAAAGGAGGCAGTTCCTAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CCA 90 bp ATAATGCTTCTCTGCTTCCCACGATGGCCTAGGAACTGCCTCCTTTCTACAAGAATCTCACAGAAGAAGTaGTTCAGTCGATGTCCACAA +
Preference number: 4 (lower is better)
Translates to: IMLLCFPRWPRNCLLSTRISQKK*FSRCPQ
Trigger: TTGTGGACATCGACTGAACCACTTCTTCTGTGAGAT...TCTTGTAGAAAGGAGGCAGTTCCTAGGCCATCGTGGGAAGCAGAGAAGCATTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CCA 90 bp CCTAGGAACTGCCTCCTTTCTACAAGAGGAGACAATATACATTCTCCAAGCACCCAGAATAGGTGCCCTTaGGTTGTAAGTATGTGTACA +
Preference number: 4 (lower is better)
Translates to: PRNCLLSTRGDNIHSPSTQNRCP*VVSMCT
Trigger: TGTACACATACTTACAACCCAAGGGCACCTATTCTG...GGTGCTTGGAGAATGTATATTGTCTCCTCTTGTAGAAAGGAGGCAGTTCCTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR CAA 72 bp CACACCCCTCCCATTACAGAATGCCTCCCTAATAATTaGCATGCTGCCTCAAGTAGAAAAGCAACCTTCATA +
Preference number: 4 (lower is better)
Translates to: HTPPITECLPNN*HAASSRKATFI
Trigger: TATGAAGGTTGCTTTTCTACTTGAGGCAGCATGCAAATTATTAGGGAGGCATTCTGTAATGGGAGGGGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR TCA 90 bp CCTAGGAACTGCCTCCTTTCTACAAGAGGAGACAATATACATTCTCCAAGCACCATCATGAGGCTCGTCTaGATTAGAGAGTTCATGAAT +
Preference number: 4 (lower is better)
Translates to: PRNCLLSTRGDNIHSPSTIMRLV*IREFMN
Trigger: ATTCATGAACTCTCTAATTCAGACGAGCCTCATGAT...GGTGCTTGGAGAATGTATATTGTCTCCTCTTGTAGAAAGGAGGCAGTTCCTAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR GCA 90 bp TACAAAGCGTTTCAAGAGATCTCCACTTCCAACTACAAAGCAAGGAAACACCAGCTTGGTCTTCAGCACTaGCTGAGCAATGTTTGCATA +
Preference number: 4 (lower is better)
Translates to: YKAFQEISTSNYKARKHQLGLQH*LSNVCI
Trigger: TATGCAAACATTGCTCAGGCAGTGCTGAAGACCAAG...CTGGTGTTTCCTTGCTTTGTAGTTGGAAGTGGAGATCTCTTGAAACGCTTTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
3UTR CAA 72 bp AAGAGGTCTGTTGATGCTCATTTTGTACTAGCTGTTTaGCAAGGACAGGATGAGTATGTAACTCATGACCAT +
Preference number: 4 (lower is better)
Translates to: KRSVDAHFVLAV*QGQDEYVTHDH
Trigger: ATGGTCATGAGTTACATACTCATCCTGTCCTTGCAAAACAGCTAGTACAAAATGAGCATCAACAGACCTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CAA 90 bp ATAGGGCATTCTGCACAGCATCATGCTAGGAATCTGGAAGGCACTGCCATCAGGGAGAAGGAGTTCCAGTaGAGGGAAATCAGAGAAACC +
Preference number: 5 (lower is better)
Translates to: IGHSAQHHARNLEGTAIREKEFQ*REIRET
Trigger: GGTTTCTCTGATTTCCCTCAACTGGAACTCCTTCTC...CCTGATGGCAGTGCCTTCCAGATTCCTAGCATGATGCTGTGCAGAATGCCCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS TCA 90 bp TTCAGTCGATGTCCACAAAGAGGCACCGCCATCATGAGGCTCGTCTaGATTAGAGAGTTCATGAATCCTCCTACCCACGAAACAATAGCT +
Preference number: 5 (lower is better)
Translates to: FSRCPQRGTAIMRLV*IREFMNPPTHETIA
Trigger: AGCTATTGTTTCGTGGGTAGGAGGATTCATGAACTCTCTAATTCAGACGAGCCTCATGATGGCGGTGCCTCTTTGTGGACATCGACTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062719.2
ENSMUST00000215014.2
CDS-3UTR CAA 90 bp CCTAGGAACTGCCTCCTTTCTACAAGAGGAGACAATATACATTCTCCAAGCACCCGGACCACAAACATTTaGGCTCCTGTTCCTTCTGTG +
Preference number: 5 (lower is better)
Translates to: PRNCLLSTRGDNIHSPSTRTTNI*APVPSV
Trigger: CACAGAAGGAACAGGAGCCAAAATGTTTGTGGTCCG...GGTGCTTGGAGAATGTATATTGTCTCCTCTTGTAGAAAGGAGGCAGTTCCTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS CCA 90 bp GTGTTATGGGAAAAATCAAGAATACAACTCGGACCACAAACATTTTaGCTCCTGTTCCTTCTGTGTCCTCACAGGCCAACTTCAGGAGAC +
Preference number: 5 (lower is better)
Translates to: VLWEKSRIQLGPQTF*LLFLLCPHRPTSGD
Trigger: GTCTCCTGAAGTTGGCCTGTGAGGACACAGAAGGAACAGGAGCCAAAATGTTTGTGGTCCGAGTTGTATTCTTGATTTTTCCCATAACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062719.2
ENSMUST00000215014.2
CDS-3UTR CAA 90 bp CATGGTACAAAATCGACTCTAGCTCTTTGTTTCATGTGGACTATAGACACTGAAGTCCCCAGAGCCTTTTaGCACCCTGCCATTGACTTG +
Preference number: 5 (lower is better)
Translates to: HGTKSTLALCFMWTIDTEVPRAF*HPAIDL
Trigger: CAAGTCAATGGCAGGGTGCAAAAAGGCTCTGGGGAC...TTCAGTGTCTATAGTCCACATGAAACAAAGAGCTAGAGTCGATTTTGTACCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS-3UTR CAA 90 bp TACAAAGCGTTTCAAGAGATCTCCACTTCCAACTACAAAGCAAGGAAACACCAGATAATGATAGTGGAGTaGCCAAAGAGAGTTAGGGAG +
Preference number: 5 (lower is better)
Translates to: YKAFQEISTSNYKARKHQIMIVE*PKRVRE
Trigger: CTCCCTAACTCTCTTTGGCAACTCCACTATCATTAT...CTGGTGTTTCCTTGCTTTGTAGTTGGAAGTGGAGATCTCTTGAAACGCTTTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215014.2
CDS CCA 90 bp GCACTGCCTGAGCAATGTTTGCATAGGAGCTTAGAATTAGTGTTATaGGAAAAATCAAGAATACAACTCGGACCACAAACATTTTGGCTC +
Preference number: 5 (lower is better)
Translates to: ALPEQCLHRSLELVL*EKSRIQLGPQTFWL
Trigger: GAGCCAAAATGTTTGTGGTCCGAGTTGTATTCTTGATTTTTCCCATAACACTAATTCTAAGCTCCTATGCAAACATTGCTCAGGCAGTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062719.2
ENSMUST00000215014.2
CDS CCA 72 bp AAGTCCCCAGAGCCTTTTTGCACCCTGCCATTGACTTaGTCTTCAGCACTGCCTGAGCAATGTTTGCATAGG +
Preference number: 6 (lower is better)
Translates to: KSPEPFCTLPLT*SSALPEQCLHR
Trigger: CCTATGCAAACATTGCTCAGGCAGTGCTGAAGACCAAGTCAATGGCAGGGTGCAAAAAGGCTCTGGGGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062719.2
ENSMUST00000215014.2
CDS TCA 72 bp TGTCCACAAAGAGGCACCGCCATCATGAGGCTCGTCTaGATTAGAGAGTTCATGAATCCTCCTACCCACGAA +
Preference number: 6 (lower is better)
Translates to: CPQRGTAIMRLV*IREFMNPPTHE
Trigger: TTCGTGGGTAGGAGGATTCATGAACTCTCTAATTCAGACGAGCCTCATGATGGCGGTGCCTCTTTGTGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062719.2
ENSMUST00000215014.2
CDS GCA 72 bp AAAGGGCCACAAACTTCCCCTTGCTCTCAGAATAGGTaGCCTTGGGTTGTAAGTATGTGTACATGGCTGCAC +
Preference number: 6 (lower is better)
Translates to: KGPQTSPCSQNR*PWVVSMCTWLH
Trigger: GTGCAGCCATGTACACATACTTACAACCCAAGGGCACCTATTCTGAGAGCAAGGGGAAGTTTGTGGCCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062719.2
ENSMUST00000215014.2
CDS CCA 72 bp CCACAAACTTCCCCTTGCTCTCAGAATAGGTGCCCTTaGGTTGTAAGTATGTGTACATGGCTGCACCATAAA +
Preference number: 6 (lower is better)
Translates to: PQTSPCSQNRCP*VVSMCTWLHHK
Trigger: TTTATGGTGCAGCCATGTACACATACTTACAACCCAAGGGCACCTATTCTGAGAGCAAGGGGAAGTTTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062719.2
ENSMUST00000215014.2
CDS CCA 72 bp GAAAAATCAAGAATACAACTCGGACCACAAACATTTTaGCTCCTGTTCCTTCTGTGTCCTCACAGGCCAACT +
Preference number: 6 (lower is better)
Translates to: EKSRIQLGPQTF*LLFLLCPHRPT
Trigger: AGTTGGCCTGTGAGGACACAGAAGGAACAGGAGCCAAAATGTTTGTGGTCCGAGTTGTATTCTTGATTTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062719.2
ENSMUST00000215014.2