RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1388 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047702

Ensembl transcript IDs: ENSMUST00000055584.2, ENSMUST00000215226.2

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TTGCTCCGATGTCCGATACGAAGATCCTTTCCTGTGGAGCTCCAATGCAGCGTTGGTCCAGTAGAAAGGTaGACGGGTGTGGCTCCGCAG +
Preference number: 2 (lower is better)
Translates to: LLRCPIRRSFPVELQCSVGPVER*TGVAPQ
Trigger: CTGCGGAGCCACACCCGTGCACCTTTCTACTGGACC...AACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTATCGGACATCGGAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR CCA 90 bp CGAATAATCTCTGGTCCAGTAGAAAGGTGCACGGGTGTGGCTCCGCAGGTTCCAAAGCAGGTTTCAGGCTaGGGGAGGGGAGACTACAAA +
Preference number: 2 (lower is better)
Translates to: RIISGPVERCTGVAPQVPKQVSG*GRGDYK
Trigger: TTTGTAGTCTCCCCTCCCCCAGCCTGAAACCTGCTT...TGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGACCAGAGATTATTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR GCA 90 bp CTCTGGTCCAGTAGAAAGGTGCACGGGTGTGGCTCCGCAGGTTCCAGCAGTGGGTCACATCTACTAAAATaGATAGCAGTGAACTCATGT +
Preference number: 2 (lower is better)
Translates to: LWSSRKVHGCGSAGSSSGSHLLK*IAVNSC
Trigger: ACATGAGTTCACTGCTATGCATTTTAGTAGATGTGA...CCCACTGCTGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGACCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR TCA 90 bp GTTTCACAATCTAGTGTTTCTTCTTCCTTGAACCATGGGCAACAGCTATCTATCGCGTGGCAGAACGAATaGGCAGAAAGCTCCACCCCG +
Preference number: 2 (lower is better)
Translates to: VSQSSVSSSLNHGQQLSIAWQNE*AESSTP
Trigger: CGGGGTGGAGCTTTCTGCTCATTCGTTCTGCCACGC...GATAGATAGCTGTTGCCCATGGTTCAAGGAAGAAGAAACACTAGATTGTGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR CCA 90 bp AACCGCCTGATCCATGACTTTAAACCCTTTCTTCTTCCACCTAAGCAGCTTCCTGAAGATCCTTTCCTGTaGAGCTCCAATGCAGCGTTC +
Preference number: 2 (lower is better)
Translates to: NRLIHDFKPFLLPPKQLPEDPFL*SSNAAF
Trigger: GAACGCTGCATTGGAGCTCCACAGGAAAGGATCTTC...AGGAAGCTGCTTAGGTGGAAGAAGAAAGGGTTTAAAGTCATGGATCAGGCGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR TCA 90 bp AACCGCCTGATCCATGACTTTAAACCCTTTCTTCTTCCACCTAAGCAGCTTCCTCGTCTTTTCTCACTCTaGGGATGTTCACTAGCCAGT +
Preference number: 2 (lower is better)
Translates to: NRLIHDFKPFLLPPKQLPRLFSL*GCSLAS
Trigger: ACTGGCTAGTGAACATCCTCAGAGTGAGAAAAGACG...AGGAAGCTGCTTAGGTGGAAGAAGAAAGGGTTTAAAGTCATGGATCAGGCGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR TCA 90 bp TCACAATCTAGTGTTTCTTCTTCCTTGAACCATGGGCAACAGCTATCTATCTTATTGCGACACCAGTTATaGAGGAAGGGGGAGGGGACC +
Preference number: 2 (lower is better)
Translates to: SQSSVSSSLNHGQQLSILLRHQL*RKGEGT
Trigger: GGTCCCCTCCCCCTTCCTTCATAACTGGTGTCGCAA...TAAGATAGATAGCTGTTGCCCATGGTTCAAGGAAGAAGAAACACTAGATTGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR GCA 90 bp TTGCTCCGATGTCCGATACGAAGATCCTTTCCTGTGGAGCTCCAATGCAGCGTTATGCTAGCACATTTATaGGTCTTTTCTCACTCTGAG +
Preference number: 2 (lower is better)
Translates to: LLRCPIRRSFPVELQCSVMLAHL*VFSHSE
Trigger: CTCAGAGTGAGAAAAGACGCATAAATGTGCTAGCAT...AACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTATCGGACATCGGAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR TCA 90 bp TCACAATCTAGTGTTTCTTCTTCCTTGAACCATGGGCAACAGCTATCTATCTTAAACTCTGAGGTCTACTaGAGGCTTTTTGCTAGTGAC +
Preference number: 2 (lower is better)
Translates to: SQSSVSSSLNHGQQLSILNSEVY*RLFASD
Trigger: GTCACTAGCAAAAAGCCTTCAGTAGACCTCAGAGTT...TAAGATAGATAGCTGTTGCCCATGGTTCAAGGAAGAAGAAACACTAGATTGTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR TCA 72 bp CTCCGCAGGTTCCAGCAGTGGGCGTGGCAGAACGAATaGGCAGAAAGCTCCACCCCGAGCAAGCAGGTTTCA +
Preference number: 3 (lower is better)
Translates to: LRRFQQWAWQNE*AESSTPSKQVS
Trigger: TGAAACCTGCTTGCTCGGGGTGGAGCTTTCTGCTCATTCGTTCTGCCACGCCCACTGCTGGAACCTGCGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR GCA 72 bp GATTCCCGCCGAATAATCTCTGGTCCAGTAGAAAGGTaGACGGGTGTGGCTCCGCAGGTTCCAGCAGTGGGC +
Preference number: 3 (lower is better)
Translates to: DSRRIISGPVER*TGVAPQVPAVG
Trigger: GCCCACTGCTGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGACCAGAGATTATTCGGCGGGAATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR GCA 72 bp TGGAGCTCCAATGCAGCGTTCCTCTTAGCATCTCTCTaGCATTCTTCAGGTCCCTGTTCGGGCGCCAAAATG +
Preference number: 3 (lower is better)
Translates to: WSSNAAFLLASL*HSSGPCSGAKM
Trigger: CATTTTGGCGCCCGAACAGGGACCTGAAGAATGGCAGAGAGATGCTAAGAGGAACGCTGCATTGGAGCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR GCA 72 bp TGTCCGATACGAAGATCCTTTCCTGTGGAGCTCCAATaGAGCGTTCCTCTTAGCATCTCTCTGCCATTCTTC +
Preference number: 3 (lower is better)
Translates to: CPIRRSFPVELQ*SVPLSISLPFF
Trigger: GAAGAATGGCAGAGAGATGCTAAGAGGAACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTATCGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR TCA 72 bp ACGAGCGCCCAGAGGCCTAGGGTAAAATTATCTGTCTaGGTGATTTTTAAGGCCTCACCAACTTTCTCCCAG +
Preference number: 3 (lower is better)
Translates to: TSAQRPRVKLSV*VIFKASPTFSQ
Trigger: CTGGGAGAAAGTTGGTGAGGCCTTAAAAATCACTCAGACAGATAATTTTACCCTAGGCCTCTGGGCGCTCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR-3UTR CAA 90 bp CTTCAAGCCTTACTCCTCTGGCCTGAAACAACTCCTGAAAACTATTGGCAACCGTCTACTGAAGGCTTTTaGCTAGTGACCAATGGTCCT +
Preference number: 3 (lower is better)
Translates to: LQALLLWPETTPENYWQPSTEGF*LVTNGP
Trigger: AGGACCATTGGTCACTAGCAAAAAGCCTTCAGTAGA...CGGTTGCCAATAGTTTTCAGGAGTTGTTTCAGGCCAGAGGAGTAAGGCTTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR TCA 72 bp GTATCCTACCGCATCCTCAGCAACACTTTACAAAACTaGAATTTTAAGCTAGCGCTAGCATGTGTACCTGTC +
Preference number: 3 (lower is better)
Translates to: VSYRILSNTLQN*NFKLALACVPV
Trigger: GACAGGTACACATGCTAGCGCTAGCTTAAAATTTCAGTTTTGTAAAGTGTTGCTGAGGATGCGGTAGGATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR TCA 90 bp AGGGGACCCGATTCCCGCCGAATAATCTCTGGTCCAGTAGAAAGGTGCACGGGTCCAGGGCAAGAAAAATaGGGAGCTGAGCCACACACC +
Preference number: 4 (lower is better)
Translates to: RGPDSRRIISGPVERCTGPGQEK*GAEPHT
Trigger: GGTGTGTGGCTCAGCTCCTCATTTTTCTTGCCCTGG...ACCCGTGCACCTTTCTACTGGACCAGAGATTATTCGGCGGGAATCGGGTCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR TCA 90 bp CGAATAATCTCTGGTCCAGTAGAAAGGTGCACGGGTGTGGCTCCGCAGGTTCCAGTCGAGAGAGAGCAATaGTGGATGAGTTGCCAAAGA +
Preference number: 4 (lower is better)
Translates to: RIISGPVERCTGVAPQVPVEREQ*WMSCQR
Trigger: TCTTTGGCAACTCATCCATCATTGCTCTCTCTCGAC...TGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGACCAGAGATTATTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CCA 90 bp CTCTGGTCCAGTAGAAAGGTGCACGGGTGTGGCTCCGCAGGTTCCAGCAGTGGGGAAGGTATGTGTAAATaGCTGAACCATAAAACAGAG +
Preference number: 4 (lower is better)
Translates to: LWSSRKVHGCGSAGSSSGEGMCK*LNHKTE
Trigger: CTCTGTTTTATGGTTCAGCCATTTACACATACCTTC...CCCACTGCTGGAACCTGCGGAGCCACACCCGTGCACCTTTCTACTGGACCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR TCA 90 bp TTGCTCCGATGTCCGATACGAAGATCCTTTCCTGTGGAGCTCCAATGCAGCGTTATCATGAGGCCTGTCTaGGTCAGAGAGTTCACAAGG +
Preference number: 4 (lower is better)
Translates to: LLRCPIRRSFPVELQCSVIMRPV*VREFTR
Trigger: CCTTGTGAACTCTCTGACTCAGACAGGCCTCATGAT...AACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTATCGGACATCGGAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CCA 90 bp TACGAAGATCCTTTCCTGTGGAGCTCCAATGCAGCGTTCCTCTTAGCATCTCTCCTACCCAGGAGGAGATaGCCAGTGTATGACACAGCT +
Preference number: 4 (lower is better)
Translates to: YEDPFLWSSNAAFLLASLLPRRR*PVYDTA
Trigger: AGCTGTGTCATACACTGGCCATCTCCTCCTGGGTAG...GAGAGATGCTAAGAGGAACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CCA 90 bp TTGCTCCGATGTCCGATACGAAGATCCTTTCCTGTGGAGCTCCAATGCAGCGTTGGGCCACAAACATCTTaGCCTCTGTTCTTTTTGTTT +
Preference number: 4 (lower is better)
Translates to: LLRCPIRRSFPVELQCSVGPQTS*PLFFLF
Trigger: AAACAAAAAGAACAGAGGCCAAGATGTTTGTGGCCC...AACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTATCGGACATCGGAGCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CCA 90 bp AACCGCCTGATCCATGACTTTAAACCCTTTCTTCTTCCACCTAAGCAGCTTCCTGAGACCACCAGAATGTaGGATCCACAAGTCCCAAAA +
Preference number: 4 (lower is better)
Translates to: NRLIHDFKPFLLPPKQLPETTRM*DPQVPK
Trigger: TTTTGGGACTTGTGGATCCCACATTCTGGTGGTCTC...AGGAAGCTGCTTAGGTGGAAGAAGAAAGGGTTTAAAGTCATGGATCAGGCGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CCA 90 bp TACGAAGATCCTTTCCTGTGGAGCTCCAATGCAGCGTTCCTCTTAGCATCTCTCCAGAATAGGTGTGAGTaGGCTGAAGGTATGTGTAAA +
Preference number: 4 (lower is better)
Translates to: YEDPFLWSSNAAFLLASLQNRCE*AEGMCK
Trigger: TTTACACATACCTTCAGCCCACTCACACCTATTCTG...GAGAGATGCTAAGAGGAACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR TCA 90 bp TACTTTGCAATAAGATTCAGCACTTCCTCTTCCCCACAGGGAATTAGAGACTATAAGACAAGTTCCAGGTaGGGCCAATCTGAGAATCCC +
Preference number: 4 (lower is better)
Translates to: YFAIRFSTSSSPQGIRDYKTSSR*GQSENP
Trigger: GGGATTCTCAGATTGGCCTCACCTGGAACTTGTCTT...ATAGTCTCTAATTCCCTGTGGGGAAGAGGAAGTGCTGAATCTTATTGCAAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR TCA 90 bp TTAAGGCCTCACCAACTTTCTCCCAGGTTTCACAATCTAGTGTTTCTTCTTCCTGAGAGCAATGATGGATaGGTTGCCAAAGAGAGTGAG +
Preference number: 4 (lower is better)
Translates to: LRPHQLSPRFHNLVFLLPESNDG*VAKESE
Trigger: CTCACTCTCTTTGGCAACTCATCCATCATTGCTCTC...AGGAAGAAGAAACACTAGATTGTGAAACCTGGGAGAAAGTTGGTGAGGCCTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR GCA 90 bp TACTTTGCAATAAGATTCAGCACTTCCTCTTCCCCACAGGGAATTAGAGACTATAAGTACATAGGTGTTTaGAGTCGAAGGTCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: YFAIRFSTSSSPQGIRDYKYIGV*SRRSSR
Trigger: TCGACTGGACCTTCGACTGCAAACACCTATGTACTT...ATAGTCTCTAATTCCCTGTGGGGAAGAGGAAGTGCTGAATCTTATTGCAAAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR GCA 90 bp TACTTTGCAATAAGATTCAGCACTTCCTCTTCCCCACAGGGAATTAGAGACTATCACACACTCTGTAGATaGCAGGGCAAGAAAAATGAG +
Preference number: 4 (lower is better)
Translates to: YFAIRFSTSSSPQGIRDYHTLCR*QGKKNE
Trigger: CTCATTTTTCTTGCCCTGGCATCTACAGAGTGTGTG...ATAGTCTCTAATTCCCTGTGGGGAAGAGGAAGTGCTGAATCTTATTGCAAAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
3UTR CAA 72 bp GAAGACACTAAAACTCTGAGGTCTACTGAAGGCTTTTaGCTAGTGACCAATGGTCCTAGAACAGACTATGAA +
Preference number: 4 (lower is better)
Translates to: EDTKTLRSTEGF*LVTNGPRTDYE
Trigger: TTCATAGTCTGTTCTAGGACCATTGGTCACTAGCAAAAAGCCTTCAGTAGACCTCAGAGTTTTAGTGTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CAA 90 bp CTTCAAGCCTTACTCCTCTGGCCTGAAACAACTCCTGAAAACTATTGGCAACCGTCTTGTCCATGGAGGTaGATGAGGAGCTGGGGCACG +
Preference number: 5 (lower is better)
Translates to: LQALLLWPETTPENYWQPSCPWR*MRSWGT
Trigger: CGTGCCCCAGCTCCTCATCAACCTCCATGGACAAGA...CGGTTGCCAATAGTTTTCAGGAGTTGTTTCAGGCCAGAGGAGTAAGGCTTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS GCA 90 bp CTTCAGTACCGCCCTGGTGATATGAGCATAGGAACCCAGGATAAGTaGCGCAGGGCAGACCAAAACTATTGTTCGGGCCACAAACATCTT +
Preference number: 5 (lower is better)
Translates to: LQYRPGDMSIGTQDK*RRADQNYCSGHKHL
Trigger: AAGATGTTTGTGGCCCGAACAATAGTTTTGGTCTGCCCTGCGGCACTTATCCTGGGTTCCTATGCTCATATCACCAGGGCGGTACTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055584.2
ENSMUST00000215226.2
CDS-3UTR CAA 90 bp TACGAAGATCCTTTCCTGTGGAGCTCCAATGCAGCGTTCCTCTTAGCATCTCTCCGGGCCACAAACATCTaGGCCTCTGTTCTTTTTGTT +
Preference number: 5 (lower is better)
Translates to: YEDPFLWSSNAAFLLASLRATNI*ASVLFV
Trigger: AACAAAAAGAACAGAGGCCAAGATGTTTGTGGCCCG...GAGAGATGCTAAGAGGAACGCTGCATTGGAGCTCCACAGGAAAGGATCTTCGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CAA 90 bp CAGGTTTCACAATCTAGTGTTTCTTCTTCCTTGAACCATGGGCAACAGCTATCTGCAATGATGGATGAGTaGCCAAAGAGAGTGAGGGAG +
Preference number: 5 (lower is better)
Translates to: QVSQSSVSSSLNHGQQLSAMMDE*PKRVRE
Trigger: CTCCCTCACTCTCTTTGGCAACTCATCCATCATTGC...AGATAGCTGTTGCCCATGGTTCAAGGAAGAAGAAACACTAGATTGTGAAACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CAA 90 bp TTAAGGCCTCACCAACTTTCTCCCAGGTTTCACAATCTAGTGTTTCTTCTTCCTGAAGTACATAGGTGTTaGCAGTCGAAGGTCCAGTCG +
Preference number: 5 (lower is better)
Translates to: LRPHQLSPRFHNLVFLLPEVHRC*QSKVQS
Trigger: CGACTGGACCTTCGACTGCAAACACCTATGTACTTC...AGGAAGAAGAAACACTAGATTGTGAAACCTGGGAGAAAGTTGGTGAGGCCTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS-3UTR CAA 90 bp TCACAATCTAGTGTTTCTTCTTCCTTGAACCATGGGCAACAGCTATCTATCTTATCCTCACAGGCCAACTaGAGGAATATGGGCATCTCA +
Preference number: 5 (lower is better)
Translates to: SQSSVSSSLNHGQQLSILSSQAN*RNMGIS
Trigger: TGAGATGCCCATATTCCTCAAGTTGGCCTGTGAGGA...TAAGATAGATAGCTGTTGCCCATGGTTCAAGGAAGAAGAAACACTAGATTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215226.2
CDS CAA 90 bp AGTGCCGCAGGGCAGACCAAAACTATTGTTCGGGCCACAAACATCTaGGCCTCTGTTCTTTTTGTTTCCTCACAGGCCAACTTGAGGAAT +
Preference number: 6 (lower is better)
Translates to: SAAGQTKTIVRATNI*ASVLFVSSQANLRN
Trigger: ATTCCTCAAGTTGGCCTGTGAGGAAACAAAAAGAACAGAGGCCAAGATGTTTGTGGCCCGAACAATAGTTTTGGTCTGCCCTGCGGCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055584.2
ENSMUST00000215226.2
CDS CAA 72 bp GGGCAGACCAAAACTATTGTTCGGGCCACAAACATCTaGGCCTCTGTTCTTTTTGTTTCCTCACAGGCCAAC +
Preference number: 6 (lower is better)
Translates to: GQTKTIVRATNI*ASVLFVSSQAN
Trigger: GTTGGCCTGTGAGGAAACAAAAAGAACAGAGGCCAAGATGTTTGTGGCCCGAACAATAGTTTTGGTCTGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055584.2
ENSMUST00000215226.2
CDS TCA 72 bp ATAGGTGTGAGTGGGCTGAAGGTATGTGTAAATGGCTaGACCATAAAACAGAGAGACCACCAGAATGTGGGA +
Preference number: 6 (lower is better)
Translates to: IGVSGLKVCVNG*TIKQRDHQNVG
Trigger: TCCCACATTCTGGTGGTCTCTCTGTTTTATGGTTCAGCCATTTACACATACCTTCAGCCCACTCACACCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055584.2
ENSMUST00000215226.2