RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1359 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000108674

Ensembl transcript IDs: ENSMUST00000214435.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GATGGAGCGTGGTGTTCAGTGGCTTTCTCCTTGGCATCCTGCCCGTaGAAGCCACAACACCCAGCTCCTCACAGATCTCTAAAAGGCACT +
Preference number: 1 (lower is better)
Translates to: DGAWCSVAFSLASCP*KPQHPAPHRSLKGT
Trigger: AGTGCCTTTTAGAGATCTGTGAGGAGCTGGGTGTTGTGGCTTTCACGGGCAGGATGCCAAGGAGAAAGCCACTGAACACCACGCTCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR TCA 90 bp TGGGGCTGGAGAGATGCTCTGTGGTTAAGAGCACACACTGTTCTTTaGGAGGACCTCAGTTCAGTTCTCAGTACCCACATGGCCTCTCAC +
Preference number: 1 (lower is better)
Translates to: WGWRDALWLRAHTVL*EDLSSVLSTHMASH
Trigger: GTGAGAGGCCATGTGGGTACTGAGAACTGAACTGAGGTCCTCTCAAAGAACAGTGTGTGCTCTTAACCACAGAGCATCTCTCCAGCCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR TCA 90 bp CCTACCGTGCTAGAAACACTGAGCATTGTAGGACACAGTGTAAATGTTTCCTGCCTCAGGGCTTGCAAATaGATATGTCCAGGCAGGACA +
Preference number: 2 (lower is better)
Translates to: PTVLETLSIVGHSVNVSCLRACK*ICPGRT
Trigger: TGTCCTGCCTGGACATATTCATTTGCAAGCCCTGAG...GCAGGAAACATTTACACTGTGTCCTACAATGCTCAGTGTTTCTAGCACGGTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR TCA 90 bp CCTACCGTGCTAGAAACACTGAGCATTGTAGGACACAGTGTAAATGTTTCCTGCTCGTTCCAGACTTGCTaGCTCAAGGCAATCAACGGA +
Preference number: 2 (lower is better)
Translates to: PTVLETLSIVGHSVNVSCSFQTC*LKAING
Trigger: TCCGTTGATTGCCTTGAGTCAGCAAGTCTGGAACGA...GCAGGAAACATTTACACTGTGTCCTACAATGCTCAGTGTTTCTAGCACGGTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR TCA 90 bp CCTACCGTGCTAGAAACACTGAGCATTGTAGGACACAGTGTAAATGTTTCCTGCGCACACACTGTTCTTTaGGAGGACCTCAGTTCAGTT +
Preference number: 2 (lower is better)
Translates to: PTVLETLSIVGHSVNVSCAHTVL*EDLSSV
Trigger: AACTGAACTGAGGTCCTCTCAAAGAACAGTGTGTGC...GCAGGAAACATTTACACTGTGTCCTACAATGCTCAGTGTTTCTAGCACGGTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR CCA 90 bp TCTTTGAGAGGACCTCAGTTCAGTTCTCAGTACCCACATGGCCTCTCACAACTGGTAGGGATAGCAGACTaGGAAAATCATAGAGTCACT +
Preference number: 2 (lower is better)
Translates to: SLRGPQFSSQYPHGLSQLVGIAD*ENHRVT
Trigger: AGTGACTCTATGATTTTCCCAGTCTGCTATCCCTAC...CAGTTGTGAGAGGCCATGTGGGTACTGAGAACTGAACTGAGGTCCTCTCAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR CCA 90 bp CCTACCGTGCTAGAAACACTGAGCATTGTAGGACACAGTGTAAATGTTTCCTGCTACAGTGAACAGGAGTaGACATCATGGTGGACTGCT +
Preference number: 2 (lower is better)
Translates to: PTVLETLSIVGHSVNVSCYSEQE*TSWWTA
Trigger: AGCAGTCCACCATGATGTCCACTCCTGTTCACTGTA...GCAGGAAACATTTACACTGTGTCCTACAATGCTCAGTGTTTCTAGCACGGTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR TCA 90 bp CCTACCGTGCTAGAAACACTGAGCATTGTAGGACACAGTGTAAATGTTTCCTGCAGAAGAAAAGTACAGTaGACAGGAGTGGACATCATG +
Preference number: 2 (lower is better)
Translates to: PTVLETLSIVGHSVNVSCRRKVQ*TGVDIM
Trigger: CATGATGTCCACTCCTGTTCACTGTACTTTTCTTCT...GCAGGAAACATTTACACTGTGTCCTACAATGCTCAGTGTTTCTAGCACGGTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR TCA 90 bp CCTACCGTGCTAGAAACACTGAGCATTGTAGGACACAGTGTAAATGTTTCCTGCAGCACTGTTGAATTGTaGAAGCAATATGAGAGAAGT +
Preference number: 2 (lower is better)
Translates to: PTVLETLSIVGHSVNVSCSTVEL*KQYERS
Trigger: ACTTCTCTCATATTGCTTTCACAATTCAACAGTGCT...GCAGGAAACATTTACACTGTGTCCTACAATGCTCAGTGTTTCTAGCACGGTAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR GCA 90 bp ACATATGATATACATGATCAGTTATGGCCTTTAGTGTGCAACTGTTTTCTTCAGGTGGGGCTGGAGAGATaGTCTGTGGTTAAGAGCACA +
Preference number: 2 (lower is better)
Translates to: TYDIHDQLWPLVCNCFLQVGLER*SVVKST
Trigger: TGTGCTCTTAACCACAGAGCATCTCTCCAGCCCCAC...CTGAAGAAAACAGTTGCACACTAAAGGCCATAACTGATCATGTATATCATATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR CCA 90 bp ACATATGATATACATGATCAGTTATGGCCTTTAGTGTGCAACTGTTTTCTTCAGAAAGTACGGTGGGGCTaGAGAGATGCTCTGTGGTTA +
Preference number: 2 (lower is better)
Translates to: TYDIHDQLWPLVCNCFLQKVRWG*RDALWL
Trigger: TAACCACAGAGCATCTCTCCAGCCCCACCGTACTTT...CTGAAGAAAACAGTTGCACACTAAAGGCCATAACTGATCATGTATATCATATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR CCA 90 bp ACATATGATATACATGATCAGTTATGGCCTTTAGTGTGCAACTGTTTTCTTCAGATACGAAAAGTACGGTaGGGCTGGAGAGATGCTCTG +
Preference number: 2 (lower is better)
Translates to: TYDIHDQLWPLVCNCFLQIRKVR*GWRDAL
Trigger: CAGAGCATCTCTCCAGCCCCACCGTACTTTTCGTAT...CTGAAGAAAACAGTTGCACACTAAAGGCCATAACTGATCATGTATATCATATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR CCA 90 bp TATTTTTCAAGATTGTCAAACGGTCAACTCTATCAGCATTGTAGAGTGCTGATAGTATCCAGCCTCTACTaGCCTCACCCTAGTTCTGAA +
Preference number: 2 (lower is better)
Translates to: YFSRLSNGQLYQHCRVLIVSSLY*PHPSSE
Trigger: TTCAGAACTAGGGTGAGGCCAGTAGAGGCTGGATAC...TATCAGCACTCTACAATGCTGATAGAGTTGACCGTTTGACAATCTTGAAAAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR TCA 90 bp TATTTTTCAAGATTGTCAAACGGTCAACTCTATCAGCATTGTAGAGTGCTGATAACAGTTCTTAATGTCTaGTCCCAGCGAGGGAACATC +
Preference number: 2 (lower is better)
Translates to: YFSRLSNGQLYQHCRVLITVLNV*SQRGNI
Trigger: GATGTTCCCTCGCTGGGATCAGACATTAAGAACTGT...TATCAGCACTCTACAATGCTGATAGAGTTGACCGTTTGACAATCTTGAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR CCA 90 bp ACATATGATATACATGATCAGTTATGGCCTTTAGTGTGCAACTGTTTTCTTCAGTGGAGAGATGCTCTGTaGTTAAGAGCACACACTGTT +
Preference number: 2 (lower is better)
Translates to: TYDIHDQLWPLVCNCFLQWRDAL*LRAHTV
Trigger: AACAGTGTGTGCTCTTAACCACAGAGCATCTCTCCA...CTGAAGAAAACAGTTGCACACTAAAGGCCATAACTGATCATGTATATCATATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR GCA 90 bp CTGTTTTCTTCAGCACTGTTGAATTGTGAAAGCAATATGAGAGAAGTGTTCGTTAGAAAACAATGTTCTTaGATACGAAAAGTACGGTGG +
Preference number: 2 (lower is better)
Translates to: LFSSALLNCESNMREVFVRKQCS*IRKVRW
Trigger: CCACCGTACTTTTCGTATGCAAGAACATTGTTTTCT...AACGAACACTTCTCTCATATTGCTTTCACAATTCAACAGTGCTGAAGAAAACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR TCA 90 bp ACATATGATATACATGATCAGTTATGGCCTTTAGTGTGCAACTGTTTTCTTCAGTGTCAAGAAGAGCTTTaGCTCAAGGTTAAAGTATTG +
Preference number: 2 (lower is better)
Translates to: TYDIHDQLWPLVCNCFLQCQEEL*LKVKVL
Trigger: CAATACTTTAACCTTGAGTCAAAGCTCTTCTTGACA...CTGAAGAAAACAGTTGCACACTAAAGGCCATAACTGATCATGTATATCATATGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR CCA 90 bp TATTTTTCAAGATTGTCAAACGGTCAACTCTATCAGCATTGTAGAGTGCTGATAGAGGTCAGTTCTCTGTaGATTTTAAATTGTGTTGGT +
Preference number: 2 (lower is better)
Translates to: YFSRLSNGQLYQHCRVLIEVSSL*ILNCVG
Trigger: ACCAACACAATTTAAAATCCACAGAGAACTGACCTC...TATCAGCACTCTACAATGCTGATAGAGTTGACCGTTTGACAATCTTGAAAAATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR TCA 72 bp TGGTGTTCAGTGGCTTTCTCCTTGGCATCCTGCCCGTaGAAGCCACAACACCCAGCTCCTCACAGATCTCTA +
Preference number: 3 (lower is better)
Translates to: WCSVAFSLASCP*KPQHPAPHRSL
Trigger: TAGAGATCTGTGAGGAGCTGGGTGTTGTGGCTTTCACGGGCAGGATGCCAAGGAGAAAGCCACTGAACACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR TCA 72 bp AGAGATGCTCTGTGGTTAAGAGCACACACTGTTCTTTaGGAGGACCTCAGTTCAGTTCTCAGTACCCACATG +
Preference number: 3 (lower is better)
Translates to: RDALWLRAHTVL*EDLSSVLSTHM
Trigger: CATGTGGGTACTGAGAACTGAACTGAGGTCCTCTCAAAGAACAGTGTGTGCTCTTAACCACAGAGCATCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR TCA 72 bp CTCACCCTAGTTCTGAAAGCTGAATCTGAACCCAGATaGTCCCTAGGAAACACCAGTAATAGCTCCAAAGGC +
Preference number: 3 (lower is better)
Translates to: LTLVLKAESEPR*SLGNTSNSSKG
Trigger: GCCTTTGGAGCTATTACTGGTGTTTCCTAGGGATCATCTGGGTTCAGATTCAGCTTTCAGAACTAGGGTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR GCA 72 bp TTCTTGCATACGAAAAGTACGGTGGGGCTGGAGAGATaGTCTGTGGTTAAGAGCACACACTGTTCTTTGAGA +
Preference number: 3 (lower is better)
Translates to: FLHTKSTVGLER*SVVKSTHCSLR
Trigger: TCTCAAAGAACAGTGTGTGCTCTTAACCACAGAGCATCTCTCCAGCCCCACCGTACTTTTCGTATGCAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR CCA 72 bp GATAGAAAACAATGTTCTTGCATACGAAAAGTACGGTaGGGCTGGAGAGATGCTCTGTGGTTAAGAGCACAC +
Preference number: 3 (lower is better)
Translates to: DRKQCSCIRKVR*GWRDALWLRAH
Trigger: GTGTGCTCTTAACCACAGAGCATCTCTCCAGCCCCACCGTACTTTTCGTATGCAAGAACATTGTTTTCTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR TCA 72 bp GGGAAAATCATAGAGTCACTTCTCAGGGCTTGCAAATaGATATGTCCAGGCAGGACAACACTATATAGTCCT +
Preference number: 3 (lower is better)
Translates to: GKIIESLLRACK*ICPGRTTLYSP
Trigger: AGGACTATATAGTGTTGTCCTGCCTGGACATATTCATTTGCAAGCCCTGAGAAGTGACTCTATGATTTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR CCA 72 bp AAACTTGAAAATATGCAGCTTGTAGGGATAGCAGACTaGGAAAATCATAGAGTCACTTCTCAGGGCTTGCAA +
Preference number: 3 (lower is better)
Translates to: KLENMQLVGIAD*ENHRVTSQGLQ
Trigger: TTGCAAGCCCTGAGAAGTGACTCTATGATTTTCCCAGTCTGCTATCCCTACAAGCTGCATATTTTCAAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR-3UTR CAA 90 bp TATTTTTCAAGATTGTCAAACGGTCAACTCTATCAGCATTGTAGAGTGCTGATAAGCACACACTGTTCTTaGAGAGGACCTCAGTTCAGT +
Preference number: 3 (lower is better)
Translates to: YFSRLSNGQLYQHCRVLISTHCS*RGPQFS
Trigger: ACTGAACTGAGGTCCTCTCAAAGAACAGTGTGTGCT...TATCAGCACTCTACAATGCTGATAGAGTTGACCGTTTGACAATCTTGAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR CCA 72 bp AATGACAGTTTAACATATGATATACATGATCAGTTATaGCCTTTAGTGTGCAACTGTTTTCTTCAGCACTGT +
Preference number: 3 (lower is better)
Translates to: NDSLTYDIHDQL*PLVCNCFLQHC
Trigger: ACAGTGCTGAAGAAAACAGTTGCACACTAAAGGCCATAACTGATCATGTATATCATATGTTAAACTGTCATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR CAA 72 bp TCCCTTCTGCTAATCCCTCCAATGCCACCCCCAGCTTaGATCAAGATGCCAGTATCCAGCCTCTACTGGCCT +
Preference number: 4 (lower is better)
Translates to: SLLLIPPMPPPA*IKMPVSSLYWP
Trigger: AGGCCAGTAGAGGCTGGATACTGGCATCTTGATCAAAGCTGGGGGTGGCATTGGAGGGATTAGCAGAAGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR CCA 90 bp CCTACCGTGCTAGAAACACTGAGCATTGTAGGACACAGTGTAAATGTTTCCTGCCTTGTGTCCACACAGTaGCATCTGAAGGGTCCACGT +
Preference number: 4 (lower is better)
Translates to: PTVLETLSIVGHSVNVSCLVSTQ*HLKGPR
Trigger: ACGTGGACCCTTCAGATGCCACTGTGTGGACACAAG...GCAGGAAACATTTACACTGTGTCCTACAATGCTCAGTGTTTCTAGCACGGTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR GCA 90 bp TCTTTGAGAGGACCTCAGTTCAGTTCTCAGTACCCACATGGCCTCTCACAACTGACATGTAGATGGCAGTaGCATAGAAAAGGACCACCA +
Preference number: 4 (lower is better)
Translates to: SLRGPQFSSQYPHGLSQLTCRWQ*HRKGPP
Trigger: TGGTGGTCCTTTTCTATGGCACTGCCATCTACATGT...CAGTTGTGAGAGGCCATGTGGGTACTGAGAACTGAACTGAGGTCCTCTCAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR CAA 72 bp GAGAGATGCTCTGTGGTTAAGAGCACACACTGTTCTTaGAGAGGACCTCAGTTCAGTTCTCAGTACCCACAT +
Preference number: 4 (lower is better)
Translates to: ERCSVVKSTHCS*RGPQFSSQYPH
Trigger: ATGTGGGTACTGAGAACTGAACTGAGGTCCTCTCAAAGAACAGTGTGTGCTCTTAACCACAGAGCATCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
3UTR CAA 72 bp GCAGACTGGGAAAATCATAGAGTCACTTCTCAGGGCTaGCAAATGAATATGTCCAGGCAGGACAACACTATA +
Preference number: 4 (lower is better)
Translates to: ADWENHRVTSQG*QMNMSRQDNTI
Trigger: TATAGTGTTGTCCTGCCTGGACATATTCATTTGCAAGCCCTGAGAAGTGACTCTATGATTTTCCCAGTCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR TCA 90 bp TATTTTTCAAGATTGTCAAACGGTCAACTCTATCAGCATTGTAGAGTGCTGATACCAAGGCCAGGAAAATaGAAAGCTGGGCCACACAGC +
Preference number: 4 (lower is better)
Translates to: YFSRLSNGQLYQHCRVLIPRPGK*KAGPHS
Trigger: GCTGTGTGGCCCAGCTTTTCATTTTCCTGGCCTTGG...TATCAGCACTCTACAATGCTGATAGAGTTGACCGTTTGACAATCTTGAAAAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR CCA 90 bp ACATATGATATACATGATCAGTTATGGCCTTTAGTGTGCAACTGTTTTCTTCAGCTTGGAAGTAGGGGATaGTGGCTGCAGATACATGTA +
Preference number: 4 (lower is better)
Translates to: TYDIHDQLWPLVCNCFLQLGSRG*WLQIHV
Trigger: TACATGTATCTGCAGCCACCATCCCCTACTTCCAAG...CTGAAGAAAACAGTTGCACACTAAAGGCCATAACTGATCATGTATATCATATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR GCA 90 bp TATTTTTCAAGATTGTCAAACGGTCAACTCTATCAGCATTGTAGAGTGCTGATAGATGAAGAACAGCTCTaGTTCATTAGCTGTCGTATC +
Preference number: 4 (lower is better)
Translates to: YFSRLSNGQLYQHCRVLIDEEQL*FISCRI
Trigger: GATACGACAGCTAATGAAGCAGAGCTGTTCTTCATC...TATCAGCACTCTACAATGCTGATAGAGTTGACCGTTTGACAATCTTGAAAAATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR CAA 90 bp TCTTTGAGAGGACCTCAGTTCAGTTCTCAGTACCCACATGGCCTCTCACAACTGATGGGGGTGTGGAGTTaGGAATCCAGGCGGGACACA +
Preference number: 5 (lower is better)
Translates to: SLRGPQFSSQYPHGLSQLMGVWS*ESRRDT
Trigger: TGTGTCCCGCCTGGATTCCAAACTCCACACCCCCAT...CAGTTGTGAGAGGCCATGTGGGTACTGAGAACTGAACTGAGGTCCTCTCAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR CAA 90 bp CCTACCGTGCTAGAAACACTGAGCATTGTAGGACACAGTGTAAATGTTTCCTGCCGGGTGCTGCAGATGTaGATGAGCATCTGTGGGACC +
Preference number: 5 (lower is better)
Translates to: PTVLETLSIVGHSVNVSCRVLQM*MSICGT
Trigger: GGTCCCACAGATGCTCATCAACATCTGCAGCACCCG...GCAGGAAACATTTACACTGTGTCCTACAATGCTCAGTGTTTCTAGCACGGTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR CAA 90 bp TATTTTTCAAGATTGTCAAACGGTCAACTCTATCAGCATTGTAGAGTGCTGATACTTGTCACCAACCTCTaGAACGCTCCCTTTACCTCT +
Preference number: 5 (lower is better)
Translates to: YFSRLSNGQLYQHCRVLILVTNL*NAPFTS
Trigger: AGAGGTAAAGGGAGCGTTCAAGAGGTTGGTGACAAG...TATCAGCACTCTACAATGCTGATAGAGTTGACCGTTTGACAATCTTGAAAAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2
CDS-3UTR CAA 90 bp CTGTTTTCTTCAGCACTGTTGAATTGTGAAAGCAATATGAGAGAAGTGTTCGTTGACTGTAATACTGAGTaGCTGAAGCCACTGATCCAA +
Preference number: 5 (lower is better)
Translates to: LFSSALLNCESNMREVFVDCNTE*LKPLIQ
Trigger: TTGGATCAGTGGCTTCAGCAACTCAGTATTACAGTC...AACGAACACTTCTCTCATATTGCTTTCACAATTCAACAGTGCTGAAGAAAACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214435.2