RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1344 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090824

Ensembl transcript IDs: ENSMUST00000168341.2, ENSMUST00000218906.2

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTCTGCCTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCACCTTTaGGTTTCTGAGATTGTTGAGTTTGCTTTTTGCCTGATGTCAGGG +
Preference number: 1 (lower is better)
Translates to: LCLPSAEITGLPHHL*VSEIVEFAFCLMSG
Trigger: CCCTGACATCAGGCAAAAAGCAAACTCAACAATCTCAGAAACCCAAAGGTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAGGCAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR TCA 90 bp ATATTCATAAACATCATCACAACGTACCATGAATTTCAGTCCCCCTaGCTCTGCCTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCAC +
Preference number: 1 (lower is better)
Translates to: IFINIITTYHEFQSP*LCLPSAEITGLPHH
Trigger: GTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAGGCAGAGTCAGGGGGACTGAAATTCATGGTACGTTGTGATGATGTTTATGAATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR CCA 90 bp TTCATTAAAGGGCTCCACACCCATGAGTATCTAGGGAGCACAAACTaGACTCCAAGGAGTGATTTTATTAAGTTGAGGAGTGGATGGGGG +
Preference number: 1 (lower is better)
Translates to: FIKGLHTHEYLGSTN*TPRSDFIKLRSGWG
Trigger: CCCCCATCCACTCCTCAACTTAATAAAATCACTCCTTGGAGTCCAGTTTGTGCTCCCTAGATACTCATGGGTGTGGAGCCCTTTAATGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR CCA 90 bp AGATATTCTGTAATATTCAGACACCAATGGCCATTAATAGTTTTCTaGGTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTC +
Preference number: 1 (lower is better)
Translates to: RYSVIFRHQWPLIVF*VQPQVSFLLYLFLL
Trigger: GAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCACCCAGAAAACTATTAATGGCCATTGGTGTCTGAATATTACAGAATATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR TCA 90 bp CTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCACCTTTGGGTTTCTGAGATTCATGGGCAATGGACATaGTCAAAATACAGTCTGAGA +
Preference number: 2 (lower is better)
Translates to: LPSAEITGLPHHLWVSEIHGQWT*SKYSLR
Trigger: TCTCAGACTGTATTTTGATCATGTCCATTGCCCATG...AATCTCAGAAACCCAAAGGTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR CCA 90 bp CTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCACCTTTGGGTTTCTGAGATTCCATTAATAGTTTTCTaGGTGCAGCCCCAAGTTTCT +
Preference number: 2 (lower is better)
Translates to: LPSAEITGLPHHLWVSEIPLIVF*VQPQVS
Trigger: AGAAACTTGGGGCTGCACCCAGAAAACTATTAATGG...AATCTCAGAAACCCAAAGGTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR TCA 90 bp TCCTCCAGCCCCTCCAAGTATCCTCACTGCAGATTTAGAGATGCACAGATATTCGCAAGTGAATCTCTGTaGGTTCGAATCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: SSSPSKYPHCRFRDAQIFASESL*VRIQPG
Trigger: ACCAGGCTGGATTCGAACTCACAGAGATTCACTTGC...GAATATCTGTGCATCTCTAAATCTGCAGTGAGGATACTTGGAGGGGCTGGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR TCA 90 bp GAGATTGTTGAGTTTGCTTTTTGCCTGATGTCAGGGGTGCTAAAGCAAGGCCCTGGAGGCAGAGGCAAGTaGATCTCTGTGAGTTCGAAT +
Preference number: 2 (lower is better)
Translates to: EIVEFAFCLMSGVLKQGPGGRGK*ISVSSN
Trigger: ATTCGAACTCACAGAGATTCACTTGCCTCTGCCTCC...AGGGCCTTGCTTTAGCACCCCTGACATCAGGCAAAAAGCAAACTCAACAATCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR GCA 90 bp GTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTCGCTCTCCATTCCTCACAGTCACAGCAGTaGAGTAGCCACAGCAACTCT +
Preference number: 2 (lower is better)
Translates to: VQPQVSFLLYLFLLALHSSQSQQ*SSHSNS
Trigger: AGAGTTGCTGTGGCTACTGCACTGCTGTGACTGTGA...GGAATGGAGAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR TCA 90 bp TCCTCCAGCCCCTCCAAGTATCCTCACTGCAGATTTAGAGATGCACAGATATTCTTGAACAGACCAGACTaGGAGAAAATTCTGTGCCCC +
Preference number: 2 (lower is better)
Translates to: SSSPSKYPHCRFRDAQIFLNRPD*EKILCP
Trigger: GGGGCACAGAATTTTCTCTCAGTCTGGTCTGTTCAA...GAATATCTGTGCATCTCTAAATCTGCAGTGAGGATACTTGGAGGGGCTGGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR CCA 90 bp GTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTCGCTCTCCATTCCGGGGAGGTTAGATCTTaGACGATTTTAGGGAAGGCA +
Preference number: 2 (lower is better)
Translates to: VQPQVSFLLYLFLLALHSGEVRS*TILGKA
Trigger: TGCCTTCCCTAAAATCGTCCAAGATCTAACCTCCCC...GGAATGGAGAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR CCA 90 bp GTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTCGCTCTCCATTCCGGTAGAGTGCTCCTCTaGTATGCACTGGTAAGTCAA +
Preference number: 2 (lower is better)
Translates to: VQPQVSFLLYLFLLALHSGRVLL*YALVSQ
Trigger: TTGACTTACCAGTGCATACCAGAGGAGCACTCTACC...GGAATGGAGAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR TCA 90 bp GAGATTGTTGAGTTTGCTTTTTGCCTGATGTCAGGGGTGCTAAAGCAAGGCCCTTACCTCCATGGAATTTaGACAGACCAGACTGAGAGA +
Preference number: 2 (lower is better)
Translates to: EIVEFAFCLMSGVLKQGPYLHGI*TDQTER
Trigger: TCTCTCAGTCTGGTCTGTTCAAATTCCATGGAGGTA...AGGGCCTTGCTTTAGCACCCCTGACATCAGGCAAAAAGCAAACTCAACAATCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR GCA 90 bp GTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTCGCTCTCCATTCCCTGGTAAGTCAACCATaGTTCATTAAAGGGCTCCAC +
Preference number: 2 (lower is better)
Translates to: VQPQVSFLLYLFLLALHSLVSQP*FIKGLH
Trigger: GTGGAGCCCTTTAATGAAGCATGGTTGACTTACCAG...GGAATGGAGAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR CCA 90 bp CTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCACCTTTGGGTTTCTGAGATTATATTCAGACACCAATaGCCATTAATAGTTTTCTGG +
Preference number: 2 (lower is better)
Translates to: LPSAEITGLPHHLWVSEIIFRHQ*PLIVFW
Trigger: CCAGAAAACTATTAATGGCCATTGGTGTCTGAATAT...AATCTCAGAAACCCAAAGGTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR CCA 90 bp TTTTCTGGGTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTCGCTCCTAGGGAGCACAAACTaGACTCCAAGGAGTGATTTT +
Preference number: 2 (lower is better)
Translates to: FSGCSPKFLSCFICSCSLLGSTN*TPRSDF
Trigger: AAAATCACTCCTTGGAGTCCAGTTTGTGCTCCCTAG...GAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCACCCAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR GCA 90 bp TCCTCCAGCCCCTCCAAGTATCCTCACTGCAGATTTAGAGATGCACAGATATTCCCCAAGTTTCTTTCTTaGTTTATCTGTTCTTGCTCG +
Preference number: 2 (lower is better)
Translates to: SSSPSKYPHCRFRDAQIFPKFLS*FICSCS
Trigger: CGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGG...GAATATCTGTGCATCTCTAAATCTGCAGTGAGGATACTTGGAGGGGCTGGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR CCA 90 bp GTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTCGCTCTCCATTCCAAGAAGATACCTCCATaGAATTTGAACAGACCAGAC +
Preference number: 2 (lower is better)
Translates to: VQPQVSFLLYLFLLALHSKKIPP*NLNRPD
Trigger: GTCTGGTCTGTTCAAATTCCATGGAGGTATCTTCTT...GGAATGGAGAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR GCA 72 bp CACCTTCTGGTGTCCTTGGACACTGCATACACATGCTaGACACACATGCTGCACACACATGCACTCAGGCAC +
Preference number: 3 (lower is better)
Translates to: HLLVSLDTAYTC*THMLHTHALRH
Trigger: GTGCCTGAGTGCATGTGTGTGCAGCATGTGTGTGCAGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR GCA 72 bp CAGCACCTTCTGGTGTCCTTGGACACTGCATACACATaGTGCACACACATGCTGCACACACATGCACTCAGG +
Preference number: 3 (lower is better)
Translates to: QHLLVSLDTAYT*CTHMLHTHALR
Trigger: CCTGAGTGCATGTGTGTGCAGCATGTGTGTGCAGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR CCA 72 bp TTCAGTCCCAGGGAATCCAGCACCTTCTGGTGTCCTTaGACACTGCATACACATGCTGCACACACATGCTGC +
Preference number: 3 (lower is better)
Translates to: FSPRESSTFWCP*TLHTHAAHTCC
Trigger: GCAGCATGTGTGTGCAGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR TCA 72 bp AACATCATCACAACGTACCATGAATTTCAGTCCCCCTaGCTCTGCCTCCCGAGTGCTGAGATAACAGGCCTG +
Preference number: 3 (lower is better)
Translates to: NIITTYHEFQSP*LCLPSAEITGL
Trigger: CAGGCCTGTTATCTCAGCACTCGGGAGGCAGAGTCAGGGGGACTGAAATTCATGGTACGTTGTGATGATGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR CCA 72 bp ATCTGTAAATTCAGTCCCAGGGAATCCAGCACCTTCTaGTGTCCTTGGACACTGCATACACATGCTGCACAC +
Preference number: 3 (lower is better)
Translates to: ICKFSPRESSTF*CPWTLHTHAAH
Trigger: GTGTGCAGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACTGAATTTACAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR-3UTR CAA 90 bp AGTCCCAGGGAATCCAGCACCTTCTGGTGTCCTTGGACACTGCATACACATGCTCCCCAAGTTTCTTTCTaGCTTTATCTGTTCTTGCTC +
Preference number: 3 (lower is better)
Translates to: SPRESSTFWCPWTLHTHAPQVSF*LYLFLL
Trigger: GAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGG...AGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR GCA 72 bp AGAGTGCTCCTCTGGTATGCACTGGTAAGTCAACCATaGTTCATTAAAGGGCTCCACACCCATGAGTATCTA +
Preference number: 3 (lower is better)
Translates to: RVLLWYALVSQP*FIKGLHTHEYL
Trigger: TAGATACTCATGGGTGTGGAGCCCTTTAATGAAGCATGGTTGACTTACCAGTGCATACCAGAGGAGCACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR TCA 72 bp AGTGAAAATATTCATAAACATCATCACAACGTACCATaGATTTCAGTCCCCCTGACTCTGCCTCCCGAGTGC +
Preference number: 3 (lower is better)
Translates to: SENIHKHHHNVP*ISVPLTLPPEC
Trigger: GCACTCGGGAGGCAGAGTCAGGGGGACTGAAATTCATGGTACGTTGTGATGATGTTTATGAATATTTTCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR GCA 72 bp TGCATACACATGCTGCACACACATGCTGCACACACATaGACTCAGGCACACACACATATGTATAAAATAAAT +
Preference number: 3 (lower is better)
Translates to: CIHMLHTHAAHT*TQAHTHMYKIN
Trigger: ATTTATTTTATACATATGTGTGTGTGCCTGAGTGCATGTGTGTGCAGCATGTGTGTGCAGCATGTGTATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR CCA 72 bp GAGATGCACAGATATTCTGTAATATTCAGACACCAATaGCCATTAATAGTTTTCTGGGTGCAGCCCCAAGTT +
Preference number: 3 (lower is better)
Translates to: EMHRYSVIFRHQ*PLIVFWVQPQV
Trigger: AACTTGGGGCTGCACCCAGAAAACTATTAATGGCCATTGGTGTCTGAATATTACAGAATATCTGTGCATCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR CCA 90 bp CTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCACCTTTGGGTTTCTGAGATTGGGGCGCAGGGAAGGTaGGGCCCACAGTCCCAGCAG +
Preference number: 4 (lower is better)
Translates to: LPSAEITGLPHHLWVSEIGAQGR*GPQSQQ
Trigger: CTGCTGGGACTGTGGGCCCCACCTTCCCTGCGCCCC...AATCTCAGAAACCCAAAGGTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR GCA 90 bp CTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCACCTTTGGGTTTCTGAGATTGAAGTGGTCCACCGCTaGCCTCCCAGGACAGAAGGG +
Preference number: 4 (lower is better)
Translates to: LPSAEITGLPHHLWVSEIEVVHR*PPRTEG
Trigger: CCCTTCTGTCCTGGGAGGGCAGCGGTGGACCACTTC...AATCTCAGAAACCCAAAGGTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR GCA 90 bp AGTCCCAGGGAATCCAGCACCTTCTGGTGTCCTTGGACACTGCATACACATGCTAGCTGCCCAGGGAGATaGCCACGTACAGCTGCGTGC +
Preference number: 4 (lower is better)
Translates to: SPRESSTFWCPWTLHTHASCPGR*PRTAAC
Trigger: GCACGCAGCTGTACGTGGGCATCTCCCTGGGCAGCT...AGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR GCA 90 bp GTTGAGTTTGCTTTTTGCCTGATGTCAGGGGTGCTAAAGCAAGGCCCTGCTATCGGATGGCCTCGCAGCTaGCCAGGGAGATGCCCACGT +
Preference number: 4 (lower is better)
Translates to: VEFAFCLMSGVLKQGPAIGWPRS*PGRCPR
Trigger: ACGTGGGCATCTCCCTGGGCAGCTGCGAGGCCATCC...GATAGCAGGGCCTTGCTTTAGCACCCCTGACATCAGGCAAAAAGCAAACTCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR TCA 90 bp CTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCACCTTTGGGTTTCTGAGATTCACCACAGCCAAATGTaGGCTGCAGGTGGACAAAGC +
Preference number: 4 (lower is better)
Translates to: LPSAEITGLPHHLWVSEIHHSQM*AAGGQS
Trigger: GCTTTGTCCACCTGCAGCTCACATTTGGCTGTGGTG...AATCTCAGAAACCCAAAGGTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR GCA 90 bp AGTCCCAGGGAATCCAGCACCTTCTGGTGTCCTTGGACACTGCATACACATGCTCATAATGCAGCGGTCTaGACACAGCCAGGCAGCGGT +
Preference number: 4 (lower is better)
Translates to: SPRESSTFWCPWTLHTHAHNAAV*TQPGSG
Trigger: ACCGCTGCCTGGCTGTGTGCAGACCGCTGCATTATG...AGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR GCA 90 bp TCCTCCAGCCCCTCCAAGTATCCTCACTGCAGATTTAGAGATGCACAGATATTCGCCCAGTGTCCAGGATaGTCCAGCCAGCGCTGCGCA +
Preference number: 4 (lower is better)
Translates to: SSSPSKYPHCRFRDAQIFAQCPG*SSQRCA
Trigger: TGCGCAGCGCTGGCTGGAGCATCCTGGACACTGGGC...GAATATCTGTGCATCTCTAAATCTGCAGTGAGGATACTTGGAGGGGCTGGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR CCA 90 bp AGTCCCAGGGAATCCAGCACCTTCTGGTGTCCTTGGACACTGCATACACATGCTGCGCCTGCGGTAGCGTaGTACTCACATAGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: SPRESSTFWCPWTLHTHAAPAVA*YSHRLC
Trigger: ACACAGCCTATGTGAGTACCACGCTACCGCAGGCGC...AGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR CCA 90 bp AGTCCCAGGGAATCCAGCACCTTCTGGTGTCCTTGGACACTGCATACACATGCTAGCTCACAGAAGAAGTaGTCCACCGCTGCCCTCCCA +
Preference number: 4 (lower is better)
Translates to: SPRESSTFWCPWTLHTHASSQKK*STAALP
Trigger: TGGGAGGGCAGCGGTGGACCACTTCTTCTGTGAGCT...AGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR CCA 90 bp AGTCCCAGGGAATCCAGCACCTTCTGGTGTCCTTGGACACTGCATACACATGCTAGACCAGCCTGTAGTTaGCTGTGGTGTCCGCACACG +
Preference number: 4 (lower is better)
Translates to: SPRESSTFWCPWTLHTHARPACS*LWCPHT
Trigger: CGTGTGCGGACACCACAGCCAACTACAGGCTGGTCT...AGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR CCA 90 bp GAGATTGTTGAGTTTGCTTTTTGCCTGATGTCAGGGGTGCTAAAGCAAGGCCCTTCCAGCAGGGCCAGGTaGGTCAGCAGGCGATACATG +
Preference number: 4 (lower is better)
Translates to: EIVEFAFCLMSGVLKQGPSSRAR*VSRRYM
Trigger: CATGTATCGCCTGCTGACCCACCTGGCCCTGCTGGA...AGGGCCTTGCTTTAGCACCCCTGACATCAGGCAAAAAGCAAACTCAACAATCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR CAA 72 bp ATTCAGTCCCAGGGAATCCAGCACCTTCTGGTGTCCTaGGACACTGCATACACATGCTGCACACACATGCTG +
Preference number: 4 (lower is better)
Translates to: IQSQGIQHLLVS*DTAYTCCTHML
Trigger: CAGCATGTGTGTGCAGCATGTGTATGCAGTGTCCAAGGACACCAGAAGGTGCTGGATTCCCTGGGACTGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR GCA 90 bp GTTGAGTTTGCTTTTTGCCTGATGTCAGGGGTGCTAAAGCAAGGCCCTGCTATCCGATACATGGGCCGATaGAGTCGTCTGTCCAAGGCT +
Preference number: 4 (lower is better)
Translates to: VEFAFCLMSGVLKQGPAIRYMGR*SRLSKA
Trigger: AGCCTTGGACAGACGACTGCATCGGCCCATGTATCG...GATAGCAGGGCCTTGCTTTAGCACCCCTGACATCAGGCAAAAAGCAAACTCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR CCA 90 bp GTTGAGTTTGCTTTTTGCCTGATGTCAGGGGTGCTAAAGCAAGGCCCTGCTATCGTGCAGCCACCGCATTaGGTACAGAGAGTGCAAAGC +
Preference number: 4 (lower is better)
Translates to: VEFAFCLMSGVLKQGPAIVQPPH*VQRVQS
Trigger: GCTTTGCACTCTCTGTACCCAATGCGGTGGCTGCAC...GATAGCAGGGCCTTGCTTTAGCACCCCTGACATCAGGCAAAAAGCAAACTCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR TCA 90 bp GTTGAGTTTGCTTTTTGCCTGATGTCAGGGGTGCTAAAGCAAGGCCCTGCTATCTACCCAGCACAGTGGTaGGGTAGGCTAGAAGAAGTG +
Preference number: 4 (lower is better)
Translates to: VEFAFCLMSGVLKQGPAIYPAQW*GRLEEV
Trigger: CACTTCTTCTAGCCTACCTCACCACTGTGCTGGGTA...GATAGCAGGGCCTTGCTTTAGCACCCCTGACATCAGGCAAAAAGCAAACTCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR GCA 90 bp TCCTCCAGCCCCTCCAAGTATCCTCACTGCAGATTTAGAGATGCACAGATATTCCAGCAGAAGGCAACTTaGGCACAGCAGCCAGAATCC +
Preference number: 4 (lower is better)
Translates to: SSSPSKYPHCRFRDAQIFQQKAT*AQQPES
Trigger: GGATTCTGGCTGCTGTGCGCAAGTTGCCTTCTGCTG...GAATATCTGTGCATCTCTAAATCTGCAGTGAGGATACTTGGAGGGGCTGGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR TCA 90 bp TTTTCTGGGTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTCGCTCGAACTCTGTGGTTCCTaGATCATTGAGGGTTCCCGG +
Preference number: 4 (lower is better)
Translates to: FSGCSPKFLSCFICSCSLELCGS*IIEGSR
Trigger: CCGGGAACCCTCAATGATTCAGGAACCACAGAGTTC...GAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCACCCAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR GCA 90 bp TCCTCCAGCCCCTCCAAGTATCCTCACTGCAGATTTAGAGATGCACAGATATTCCAGCCAAATGTGAGCTaGAGGTGGACAAAGCTTTGT +
Preference number: 4 (lower is better)
Translates to: SSSPSKYPHCRFRDAQIFQPNVS*RWTKLC
Trigger: ACAAAGCTTTGTCCACCTGCAGCTCACATTTGGCTG...GAATATCTGTGCATCTCTAAATCTGCAGTGAGGATACTTGGAGGGGCTGGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS-3UTR CCA 90 bp GTGCAGCCCCAAGTTTCTTTCTTGCTTTATCTGTTCTTGCTCGCTCTCCATTCCACTGCCACCAGTTTATaGTGTCTAGCAGGAAGATCA +
Preference number: 4 (lower is better)
Translates to: VQPQVSFLLYLFLLALHSTATSL*CLAGRS
Trigger: TGATCTTCCTGCTAGACACCATAAACTGGTGGCAGT...GGAATGGAGAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
3UTR CAA 72 bp TTAATAGTTTTCTGGGTGCAGCCCCAAGTTTCTTTCTaGCTTTATCTGTTCTTGCTCGCTCTCCATTCCTCC +
Preference number: 4 (lower is better)
Translates to: LIVFWVQPQVSF*LYLFLLALHSS
Trigger: GGAGGAATGGAGAGCGAGCAAGAACAGATAAAGCAAGAAAGAAACTTGGGGCTGCACCCAGAAAACTATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS GCA 90 bp GGCAGCGGTCCAGGGCCATCGCTGCCAAGAGGATGGCCTCGCAGCTaGCCAGGGAGATGCCCACGTACAGCTGCGTGCCACAACGTACCA +
Preference number: 5 (lower is better)
Translates to: GSGPGPSLPRGWPRS*PGRCPRTAACHNVP
Trigger: TGGTACGTTGTGGCACGCAGCTGTACGTGGGCATCTCCCTGGGCAGCTGCGAGGCCATCCTCTTGGCAGCGATGGCCCTGGACCGCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS CCA 90 bp GGCGGGCACTGCGCATGGTCATGTGTGCCAGCGCCTGCGGTAGCGTaGTACTCACATAGGCTGTGTCCAGCAGGGCCAGGTGGGTCAGCA +
Preference number: 5 (lower is better)
Translates to: GGHCAWSCVPAPAVA*YSHRLCPAGPGGSA
Trigger: TGCTGACCCACCTGGCCCTGCTGGACACAGCCTATGTGAGTACCACGCTACCGCAGGCGCTGGCACACATGACCATGCGCAGTGCCCGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS GCA 90 bp CAACACAATGCGCGTCCCCCGCAGCCGGGCCAGGGCATAGCGAGCTaGCATGTGGACCTCACGGTTTCGAAGGCTGTAGATGAGTGGATT +
Preference number: 5 (lower is better)
Translates to: QHNARPPQPGQGIAS*HVDLTVSKAVDEWI
Trigger: AATCCACTCATCTACAGCCTTCGAAACCGTGAGGTCCACATGGCAGCTCGCTATGCCCTGGCCCGGCTGCGGGGGACGCGCATTGTGTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS CCA 90 bp CATAGGCTGTGTCCAGCAGGGCCAGGTGGGTCAGCAGGCGATACATaGGCCGATGCAGTCGTCTGTCCAAGGCTATCAGACCCACTAGGG +
Preference number: 5 (lower is better)
Translates to: HRLCPAGPGGSAGDT*ADAVVCPRLSDPLG
Trigger: CCCTAGTGGGTCTGATAGCCTTGGACAGACGACTGCATCGGCCCATGTATCGCCTGCTGACCCACCTGGCCCTGCTGGACACAGCCTATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS-3UTR CAA 90 bp CTCCCGAGTGCTGAGATAACAGGCCTGCCCCACCACCTTTGGGTTTCTGAGATTCCAGCAGAAGGCAACTaGCGCACAGCAGCCAGAATC +
Preference number: 5 (lower is better)
Translates to: LPSAEITGLPHHLWVSEIPAEGN*RTAARI
Trigger: GATTCTGGCTGCTGTGCGCAAGTTGCCTTCTGCTGG...AATCTCAGAAACCCAAAGGTGGTGGGGCAGGCCTGTTATCTCAGCACTCGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218906.2
CDS GCA 72 bp GCTGCGTGCCACAACGTACCAGGGAGAGGCGGGCACTaGGCATGGTCATGTGTGCCAGCGCCTGCGGTAGCG +
Preference number: 6 (lower is better)
Translates to: AACHNVPGRGGH*AWSCVPAPAVA
Trigger: CGCTACCGCAGGCGCTGGCACACATGACCATGCGCAGTGCCCGCCTCTCCCTGGTACGTTGTGGCACGCAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS GCA 72 bp GCCTCGCAGCTGCCCAGGGAGATGCCCACGTACAGCTaGGTGCCACAACGTACCAGGGAGAGGCGGGCACTG +
Preference number: 6 (lower is better)
Translates to: ASQLPREMPTYS*VPQRTRERRAL
Trigger: CAGTGCCCGCCTCTCCCTGGTACGTTGTGGCACGCAGCTGTACGTGGGCATCTCCCTGGGCAGCTGCGAGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS GCA 72 bp CCAGGGCCATCGCTGCCAAGAGGATGGCCTCGCAGCTaGCCAGGGAGATGCCCACGTACAGCTGCGTGCCAC +
Preference number: 6 (lower is better)
Translates to: PGPSLPRGWPRS*PGRCPRTAACH
Trigger: GTGGCACGCAGCTGTACGTGGGCATCTCCCTGGGCAGCTGCGAGGCCATCCTCTTGGCAGCGATGGCCCTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS GCA 72 bp CTGCCAAGAGGATGGCCTCGCAGCTGCCCAGGGAGATaGCCACGTACAGCTGCGTGCCACAACGTACCAGGG +
Preference number: 6 (lower is better)
Translates to: LPRGWPRSCPGR*PRTAACHNVPG
Trigger: CCCTGGTACGTTGTGGCACGCAGCTGTACGTGGGCATCTCCCTGGGCAGCTGCGAGGCCATCCTCTTGGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS CCA 72 bp TGCCACAACGTACCAGGGAGAGGCGGGCACTGCGCATaGTCATGTGTGCCAGCGCCTGCGGTAGCGTGGTAC +
Preference number: 6 (lower is better)
Translates to: CHNVPGRGGHCA*SCVPAPAVAWY
Trigger: GTACCACGCTACCGCAGGCGCTGGCACACATGACCATGCGCAGTGCCCGCCTCTCCCTGGTACGTTGTGGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS CCA 72 bp GGATGGGCACGCCCAGGCCATAGACCAGCCTGTAGTTaGCTGTGGTGTCCGCACACGCTGTCCTCAGCACCG +
Preference number: 6 (lower is better)
Translates to: GWARPGHRPACS*LWCPHTLSSAP
Trigger: CGGTGCTGAGGACAGCGTGTGCGGACACCACAGCCAACTACAGGCTGGTCTATGGCCTGGGCGTGCCCATCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS CCA 72 bp GCACGCCCAGGCCATAGACCAGCCTGTAGTTGGCTGTaGTGTCCGCACACGCTGTCCTCAGCACCGCAGGTA +
Preference number: 6 (lower is better)
Translates to: ARPGHRPACSWL*CPHTLSSAPQV
Trigger: TACCTGCGGTGCTGAGGACAGCGTGTGCGGACACCACAGCCAACTACAGGCTGGTCTATGGCCTGGGCGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS CAA 72 bp CCAGGACAGAAGGGCAGGCGTAGTGCAGCCACCGCATaGGGTACAGAGAGTGCAAAGCCCAGTGTCCAGGAT +
Preference number: 6 (lower is better)
Translates to: PGQKGRRSAATA*GTESAKPSVQD
Trigger: ATCCTGGACACTGGGCTTTGCACTCTCTGTACCCAATGCGGTGGCTGCACTACGCCTGCCCTTCTGTCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS TCA 72 bp TCAGACCCACTAGGGCACCATTACCCAGCACAGTGGTaGGGTAGGCTAGAAGAAGTGAGGCCCACAGCAGGG +
Preference number: 6 (lower is better)
Translates to: SDPLGHHYPAQW*GRLEEVRPTAG
Trigger: CCCTGCTGTGGGCCTCACTTCTTCTAGCCTACCTCACCACTGTGCTGGGTAATGGTGCCCTAGTGGGTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS GCA 72 bp ACAAAGCTTTGTGGCGACTTCCAGCAGAAGGCAACTTaGGCACAGCAGCCAGAATCCAGGTGTAAGAGGCTA +
Preference number: 6 (lower is better)
Translates to: TKLCGDFQQKAT*AQQPESRCKRL
Trigger: TAGCCTCTTACACCTGGATTCTGGCTGCTGTGCGCAAGTTGCCTTCTGCTGGAAGTCGCCACAAAGCTTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2
CDS GCA 72 bp TGGATTGAGGACAGGTGTGACCACCAGGTAGAAAACTaGCACCAGTTTATGGTGTCTAGCAGGAAGATCACT +
Preference number: 6 (lower is better)
Translates to: WIEDRCDHQVEN*HQFMVSSRKIT
Trigger: AGTGATCTTCCTGCTAGACACCATAAACTGGTGGCAGTTTTCTACCTGGTGGTCACACCTGTCCTCAATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168341.2
ENSMUST00000218906.2