Pregenerated sensors for OLFR1333 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000110947Ensembl transcript IDs: ENSMUST00000076019.4, ENSMUST00000214477.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGAGAACCTGTGCTGCATTACTTAGCCTACAGCACATCAGCCTCTaGTGTGTCTATTACAGCATCACTAACAACATGTTTCCTGCTGGC | + |
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Preference number: 1 (lower is better) Translates to: MRTCAALLSLQHISL*CVYYSITNNMFPAG Trigger: GCCAGCAGGAAACATGTTGTTAGTGATGCTGTAATAGACACAGCAGAGGCTGATGTGCTGTAGGCTAAGTAATGCAGCACAGGTTCTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR TCA 90 bp | ATCCACTATTCCTTTGCTTCTGTTAATGATGGATGGATCTCAGCCTaGCTACACAAGGAGACGTGCAATCTGCCACTAATGAAAGTGAGC | + |
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Preference number: 1 (lower is better) Translates to: IHYSFASVNDGWISA*LHKETCNLPLMKVS Trigger: GCTCACTTTCATTAGTGGCAGATTGCACGTCTCCTTGTGTAGTCAGGCTGAGATCCATCCATCATTAACAGAAGCAAAGGAATAGTGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR GCA 90 bp | TATTACAGCATCACTAACAACATGTTTCCTGCTGGCTTACATGTATaGAGTTGCCAGTCAGAAAATACGGCAGGTTGCAAAACTGCTGCT | + |
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Preference number: 1 (lower is better) Translates to: YYSITNNMFPAGLHV*SCQSENTAGCKTAA Trigger: AGCAGCAGTTTTGCAACCTGCCGTATTTTCTGACTGGCAACTGCATACATGTAAGCCAGCAGGAAACATGTTGTTAGTGATGCTGTAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR GCA 90 bp | AGCATCACTAACAACATGTTTCCTGCTGGCTTACATGTATGCAGTTaGCAGTCAGAAAATACGGCAGGTTGCAAAACTGCTGCTAATTTT | + |
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Preference number: 1 (lower is better) Translates to: SITNNMFPAGLHVCS*QSENTAGCKTAANF Trigger: AAAATTAGCAGCAGTTTTGCAACCTGCCGTATTTTCTGACTGGCAACTGCATACATGTAAGCCAGCAGGAAACATGTTGTTAGTGATGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR TCA 90 bp | TTCACTTGTCTGTACAGGAAGAGAACACACCAATCCAATGTCACATaGCTTTCATTGCTTCTCTGTGGAAGTAAAGTAAATCCCAACATC | + |
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Preference number: 1 (lower is better) Translates to: FTCLYRKRTHQSNVT*LSLLLCGSKVNPNI Trigger: GATGTTGGGATTTACTTTACTTCCACAGAGAAGCAATGAAAGTCATGTGACATTGGATTGGTGTGTTCTCTTCCTGTACAGACAAGTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR GCA 90 bp | ACCATAGACTCCATTGAATTTAGGCAGGAAGTTTGGTCTCTTGTCTaGACCCCTTCTGTTCCACACACCATTGCTTTAATTTTAATAATG | + |
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Preference number: 1 (lower is better) Translates to: TIDSIEFRQEVWSLV*TPSVPHTIALILIM Trigger: CATTATTAAAATTAAAGCAATGGTGTGTGGAACAGAAGGGGTGCAGACAAGAGACCAAACTTCCTGCCTAAATTCAATGGAGTCTATGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR TCA 90 bp | ACATCTTCACAATTATTTTGGTCAACACATCTGGACTATAGTCAATaGCATGAAACTCTCAGATGTGTTGGCAAGGCTGATGTGGTGATT | + |
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Preference number: 1 (lower is better) Translates to: TSSQLFWSTHLDYSQ*HETLRCVGKADVVI Trigger: AATCACCACATCAGCCTTGCCAACACATCTGAGAGTTTCATGTCATTGACTATAGTCCAGATGTGTTGACCAAAATAATTGTGAAGATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR TCA 90 bp | AGGATATATCATGCATTGAGACAAGGACTGTTGTCAACAGACAATGATGAGACAGGATGGATCTCAGCCTaGCTACACAAGGAGACGTGC | + |
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Preference number: 2 (lower is better) Translates to: RIYHALRQGLLSTDNDETGWISA*LHKETC Trigger: GCACGTCTCCTTGTGTAGTCAGGCTGAGATCCATCC...TGTCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAATGCATGATATATCCT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR GCA 90 bp | GTTCATGCCTGTATCACAGAGGAATTAAATGACTGGCCAGATAAGAGCTACTCTTGTGTCCTCAGATGTTaGATGTCACCTGCAGCAATA | + |
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Preference number: 2 (lower is better) Translates to: VHACITEELNDWPDKSYSCVLRC*MSPAAI Trigger: TATTGCTGCAGGTGACATGCAACATCTGAGGACACA...AGAGTAGCTCTTATCTGGCCAGTCATTTAATTCCTCTGTGATACAGGCATGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR GCA 90 bp | GTTCATGCCTGTATCACAGAGGAATTAAATGACTGGCCAGATAAGAGCTACTCTCTGATAGGAAAAGGATaGACACCACCTCAGTGTACA | + |
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Preference number: 2 (lower is better) Translates to: VHACITEELNDWPDKSYSLIGKG*TPPQCT Trigger: TGTACACTGAGGTGGTGTGCATCCTTTTCCTATCAG...AGAGTAGCTCTTATCTGGCCAGTCATTTAATTCCTCTGTGATACAGGCATGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR GCA 90 bp | GTCTTGTGTCATAAGCACAAAATCACAGTAATGGGAGGTGGACACAAGAGATTCCTACACAAGGAGACGTaGAATCTGCCACTAATGAAA | + |
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Preference number: 2 (lower is better) Translates to: VLCHKHKITVMGGGHKRFLHKET*NLPLMK Trigger: TTTCATTAGTGGCAGATTGCACGTCTCCTTGTGTAG...GAATCTCTTGTGTCCACCTCCCATTACTGTGATTTTGTGCTTATGACACAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGAGTTAGACGATGGTCAAAGGAAGCTTGAATTGCTTGTCCCTGAAGAGAACTCAGGAAATACCTTCTaGAATATATCCCGTGAGACA | + |
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Preference number: 2 (lower is better) Translates to: SELDDGQRKLELLVPEENSGNTF*NISRET Trigger: TGTCTCACGGGATATATTGCAGAAGGTATTTCCTGA...GTTCTCTTCAGGGACAAGCAATTCAAGCTTCCTTTGACCATCGTCTAACTCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR CAA 90 bp | TCTGATATGAAGGACATCATCCAGAAACTAAAATATCACCAGGTCTaGTGTCATAAGCACAAAATCACAGTAATGGGAGGTGGACACAAG | + |
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Preference number: 2 (lower is better) Translates to: SDMKDIIQKLKYHQV*CHKHKITVMGGGHK Trigger: CTTGTGTCCACCTCCCATTACTGTGATTTTGTGCTTATGACACAAGACCTGGTGATATTTTAGTTTCTGGATGATGTCCTTCATATCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR GCA 90 bp | TTGTGTCATAAGCACAAAATCACAGTAATGGGAGGTGGACACAAGAGATTCAAGATGTTGCATGTCACCTaGAGCAATAATTGGGATTTC | + |
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Preference number: 2 (lower is better) Translates to: LCHKHKITVMGGGHKRFKMLHVT*SNNWDF Trigger: GAAATCCCAATTATTGCTGCAGGTGACATGCAACAT...CTTGAATCTCTTGTGTCCACCTCCCATTACTGTGATTTTGTGCTTATGACACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR CCA 90 bp | AGGATATATCATGCATTGAGACAAGGACTGTTGTCAACAGACAATGATGAGACAGAAGCCAGTATGGGATaGGTTAGACCTTCTAATAAC | + |
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Preference number: 2 (lower is better) Translates to: RIYHALRQGLLSTDNDETEASMG*VRPSNN Trigger: GTTATTAGAAGGTCTAACCCATCCCATACTGGCTTC...TGTCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAATGCATGATATATCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAGACAAGGACTGTTGTCAACAGACAATGATGAGACAATGGATATCCATACAGGAAAGACTAGTTCATaGCTGTATCACAGAGGAATT | + |
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Preference number: 2 (lower is better) Translates to: LRQGLLSTDNDETMDIHTGKTSS*LYHRGI Trigger: AATTCCTCTGTGATACAGGCATGAACTAGTCTTTCC...TGTATGGATATCCATTGTCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR TCA 72 bp | TCCTTTGCTTCTGTTAATGATGGATGGATCTCAGCCTaGCTACACAAGGAGACGTGCAATCTGCCACTAATG | + |
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Preference number: 3 (lower is better) Translates to: SFASVNDGWISA*LHKETCNLPLM Trigger: CATTAGTGGCAGATTGCACGTCTCCTTGTGTAGTCAGGCTGAGATCCATCCATCATTAACAGAAGCAAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR CCA 72 bp | GATGCTCTCCTTGCCAGAATAATGCGTGCACAGATGTaGGGATCACTATTGAGAAGCTTAGGTTTAAAGGCT | + |
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Preference number: 3 (lower is better) Translates to: DALLARIMRAQM*GSLLRSLGLKA Trigger: AGCCTTTAAACCTAAGCTTCTCAATAGTGATCCCCACATCTGTGCACGCATTATTCTGGCAAGGAGAGCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR CCA 72 bp | TTAACCATAGACTCCATTGAATTTAGGCAGGAAGTTTaGTCTCTTGTCTGCACCCCTTCTGTTCCACACACC | + |
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Preference number: 3 (lower is better) Translates to: LTIDSIEFRQEV*SLVCTPSVPHT Trigger: GGTGTGTGGAACAGAAGGGGTGCAGACAAGAGACCAAACTTCCTGCCTAAATTCAATGGAGTCTATGGTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR GCA 72 bp | CAGATAAGAGCTACTCTGGAGCTGATAGGAAAAGGATaGACACCACCTCAGTGTACAAAAAGACGAGGAATA | + |
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Preference number: 3 (lower is better) Translates to: QIRATLELIGKG*TPPQCTKRRGI Trigger: TATTCCTCGTCTTTTTGTACACTGAGGTGGTGTGCATCCTTTTCCTATCAGCTCCAGAGTAGCTCTTATCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR CAA 90 bp | TTGAGACAAGGACTGTTGTCAACAGACAATGATGAGACAATGGATATCCATACAAGGAAGTTTGGTCTCTaGTCTGCACCCCTTCTGTTC | + |
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Preference number: 3 (lower is better) Translates to: LRQGLLSTDNDETMDIHTRKFGL*SAPLLF Trigger: GAACAGAAGGGGTGCAGACAAGAGACCAAACTTCCT...TGTATGGATATCCATTGTCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR GCA 72 bp | ATCACTAACAACATGTTTCCTGCTGGCTTACATGTATaGAGTTGCCAGTCAGAAAATACGGCAGGTTGCAAA | + |
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Preference number: 3 (lower is better) Translates to: ITNNMFPAGLHV*SCQSENTAGCK Trigger: TTTGCAACCTGCCGTATTTTCTGACTGGCAACTGCATACATGTAAGCCAGCAGGAAACATGTTGTTAGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR GCA 72 bp | TGTGCTGCATTACTTAGCCTACAGCACATCAGCCTCTaGTGTGTCTATTACAGCATCACTAACAACATGTTT | + |
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Preference number: 3 (lower is better) Translates to: CAALLSLQHISL*CVYYSITNNMF Trigger: AAACATGTTGTTAGTGATGCTGTAATAGACACAGCAGAGGCTGATGTGCTGTAGGCTAAGTAATGCAGCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR GCA 72 bp | TCCATTGAATTTAGGCAGGAAGTTTGGTCTCTTGTCTaGACCCCTTCTGTTCCACACACCATTGCTTTAATT | + |
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Preference number: 3 (lower is better) Translates to: SIEFRQEVWSLV*TPSVPHTIALI Trigger: AATTAAAGCAATGGTGTGTGGAACAGAAGGGGTGCAGACAAGAGACCAAACTTCCTGCCTAAATTCAATGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR CCA 72 bp | CTAGTTCATGCCTGTATCACAGAGGAATTAAATGACTaGCCAGATAAGAGCTACTCTGGAGCTGATAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: LVHACITEELND*PDKSYSGADRK Trigger: TTTCCTATCAGCTCCAGAGTAGCTCTTATCTGGCCAGTCATTTAATTCCTCTGTGATACAGGCATGAACTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCATGCCTGTATCACAGAGGAATTAAATGACTGGCCAGATAAGAGCTACTCTCTGCTAATTTTTCACTaGTCTGTACAGGAAGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: VHACITEELNDWPDKSYSLLIFH*SVQEEN Trigger: GTTCTCTTCCTGTACAGACAAGTGAAAAATTAGCAG...AGAGTAGCTCTTATCTGGCCAGTCATTTAATTCCTCTGTGATACAGGCATGAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR CAA 90 bp | TTGTGTCATAAGCACAAAATCACAGTAATGGGAGGTGGACACAAGAGATTCAAGCTAACTATGAATGGATaGTCTTCACTGTCACCCCAA | + |
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Preference number: 3 (lower is better) Translates to: LCHKHKITVMGGGHKRFKLTMNG*SSLSPQ Trigger: TTGGGGTGACAGTGAAGACAATCCATTCATAGTTAG...CTTGAATCTCTTGTGTCCACCTCCCATTACTGTGATTTTGTGCTTATGACACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR CAA 90 bp | TTGAGACAAGGACTGTTGTCAACAGACAATGATGAGACAATGGATATCCATACAAGGTACATTGAAAATTaGAAGCCAGTATGGGATGGG | + |
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Preference number: 3 (lower is better) Translates to: LRQGLLSTDNDETMDIHTRYIEN*KPVWDG Trigger: CCCATCCCATACTGGCTTCAAATTTTCAATGTACCT...TGTATGGATATCCATTGTCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR-3UTR CAA 90 bp | CTAACAACATGTTTCCTGCTGGCTTACATGTATGCAGTTGCCAGTCAGAAAATAGTATCCACTATTCCTTaGCTTCTGTTAATGATGGAT | + |
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Preference number: 3 (lower is better) Translates to: LTTCFLLAYMYAVASQKIVSTIP*LLLMMD Trigger: ATCCATCATTAACAGAAGCAAAGGAATAGTGGATAC...TATTTTCTGACTGGCAACTGCATACATGTAAGCCAGCAGGAAACATGTTGTTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR TCA 72 bp | CAATTATTTTGGTCAACACATCTGGACTATAGTCAATaGCATGAAACTCTCAGATGTGTTGGCAAGGCTGAT | + |
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Preference number: 3 (lower is better) Translates to: QLFWSTHLDYSQ*HETLRCVGKAD Trigger: ATCAGCCTTGCCAACACATCTGAGAGTTTCATGTCATTGACTATAGTCCAGATGTGTTGACCAAAATAATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR GCA 72 bp | AGAAATTTTCATGAACTTTCATCAGGAAATACCTTCTaGAATATATCCCGTGAGACAGAGATAAAGTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: RNFHELSSGNTF*NISRETEIKCL Trigger: CAGACACTTTATCTCTGTCTCACGGGATATATTGCAGAAGGTATTTCCTGATGAAAGTTCATGAAAATTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR TCA 72 bp | ACTATGAATGGATTGTCTTCACTGTCACCCCAAACATaGTTAAAAACAAATTATAAGCAGGACATCATTAGG | + |
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Preference number: 3 (lower is better) Translates to: TMNGLSSLSPQT*LKTNYKQDIIR Trigger: CCTAATGATGTCCTGCTTATAATTTGTTTTTAATCATGTTTGGGGTGACAGTGAAGACAATCCATTCATAGT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR TCA 72 bp | TTGTCAATCAATAATAGTCAAGGATATATCATGCATTaGGACAAGGACTGTTGTCAACAGACAATGATGAGA | + |
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Preference number: 3 (lower is better) Translates to: LSINNSQGYIMH*DKDCCQQTMMR Trigger: TCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAATGCATGATATATCCTTGACTATTATTGATTGACAA 35% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS-3UTR CCA 90 bp | AAAGTGAGCCCCAAGGGAATCTTTGCATGCAGAATCAGTAATATTTATGTTTTCGCTCAGGGGAGTAGCTaGAGTTCGGCCTCATGTAGA | + |
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Preference number: 4 (lower is better) Translates to: KVSPKGIFACRISNIYVFAQGSS*SSASCR Trigger: TCTACATGAGGCCGAACTCCAGCTACTCCCCTGAGC...GAAAACATAAATATTACTGATTCTGCATGCAAAGATTCCCTTGGGGCTCACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR CAA 72 bp | TTGCTTCTCTGTGGAAGTAAAGTAAATCCCAACATCTaGTTGTCAGGTTGGACCATGATGCTCTCCTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: LLLCGSKVNPNI*LSGWTMMLSLP Trigger: TGGCAAGGAGAGCATCATGGTCCAACCTGACAACAAGATGTTGGGATTTACTTTACTTCCACAGAGAAGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS-3UTR CCA 90 bp | AGGATATATCATGCATTGAGACAAGGACTGTTGTCAACAGACAATGATGAGACAAGATGCACCAACATCTaGGGCATGGTAGTGGTGACA | + |
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Preference number: 4 (lower is better) Translates to: RIYHALRQGLLSTDNDETRCTNI*GMVVVT Trigger: TGTCACCACTACCATGCCCCAGATGTTGGTGCATCT...TGTCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAATGCATGATATATCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR CAA 72 bp | AGATCAGAGTTAGACGATGGTCAAAGGAAGCTTGAATaGCTTGTCCCTGAAGAGAACCACAGGCATTTTAGA | + |
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Preference number: 4 (lower is better) Translates to: RSELDDGQRKLE*LVPEENHRHFR Trigger: TCTAAAATGCCTGTGGTTCTCTTCAGGGACAAGCAATTCAAGCTTCCTTTGACCATCGTCTAACTCTGATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS-3UTR TCA 90 bp | CTAACAACATGTTTCCTGCTGGCTTACATGTATGCAGTTGCCAGTCAGAAAATAAGCACTGTAAAAGAGTaGGATCTGCTTGTCTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: LTTCFLLAYMYAVASQKISTVKE*DLLVLL Trigger: GAGCAAGACAAGCAGATCTCACTCTTTTACAGTGCT...TATTTTCTGACTGGCAACTGCATACATGTAAGCCAGCAGGAAACATGTTGTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS-3UTR GCA 90 bp | TTGAGACAAGGACTGTTGTCAACAGACAATGATGAGACAATGGATATCCATACACCAAAAACAAACATCTaGAGGCAGCAACTAGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: LRQGLLSTDNDETMDIHTPKTNI*RQQLAN Trigger: ATTTGCTAGTTGCTGCCTGCAGATGTTTGTTTTTGG...TGTATGGATATCCATTGTCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS-3UTR CCA 90 bp | AGGATATATCATGCATTGAGACAAGGACTGTTGTCAACAGACAATGATGAGACACACAATGAGGGAGATTaGAGTAACAACCAAAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: RIYHALRQGLLSTDNDETHNEGD*SNNQKD Trigger: GTCTTTTTGGTTGTTACTCCAATCTCCCTCATTGTG...TGTCTCATCATTGTCTGTTGACAACAGTCCTTGTCTCAATGCATGATATATCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| 3UTR CAA 72 bp | AAGGACATCATCCAGAAACTAAAATATCACCAGGTCTaGTGTCATAAGCACAAAATCACAGTAATGGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: KDIIQKLKYHQV*CHKHKITVMGG Trigger: ACCTCCCATTACTGTGATTTTGTGCTTATGACACAAGACCTGGTGATATTTTAGTTTCTGGATGATGTCCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS-3UTR CAA 90 bp | AATTTAGGCAGGAAGTTTGGTCTCTTGTCTGCACCCCTTCTGTTCCACACACCAATGAAGAGGATGCTGTaGGTCGTGGGGTCACTGGAG | + |
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Preference number: 5 (lower is better) Translates to: NLGRKFGLLSAPLLFHTPMKRML*VVGSLE Trigger: CTCCAGTGACCCCACGACCAACAGCATCCTCTTCAT...TGGTGTGTGGAACAGAAGGGGTGCAGACAAGAGACCAAACTTCCTGCCTAAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS-3UTR CAA 90 bp | CTAACAACATGTTTCCTGCTGGCTTACATGTATGCAGTTGCCAGTCAGAAAATACGGCCCTCTGTGGACTaGATCTTGAGAATTGCCATG | + |
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Preference number: 5 (lower is better) Translates to: LTTCFLLAYMYAVASQKIRPSVD*ILRIAM Trigger: CATGGCAATTCTCAAGATCAAGTCCACAGAGGGCCG...TATTTTCTGACTGGCAACTGCATACATGTAAGCCAGCAGGAAACATGTTGTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS TCA 72 bp | TGTTGGTCGTGGGGTCACTGGAGAAGCCAATCAGGATaGACTCAGAGACCCAACTTTGGTTCTGCCCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: CWSWGHWRSQSG*TQRPNFGSALE Trigger: TTCCAGGGCAGAACCAAAGTTGGGTCTCTGAGTTCATCCTGATTGGCTTCTCCAGTGACCCCACGACCAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076019.4 |
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| CDS TCA 72 bp | TGTTGGTCGTGGGGTCACTGGAGAAGCCAATCAGGATaGACTCAGAGACCCAACTTTGGTTCTGCCCACTCA | + |
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Preference number: 6 (lower is better) Translates to: CWSWGHWRSQSG*TQRPNFGSAHS Trigger: TGAGTGGGCAGAACCAAAGTTGGGTCTCTGAGTTCATCCTGATTGGCTTCTCCAGTGACCCCACGACCAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214477.2 |
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| CDS CCA 72 bp | AGAGTGAGATCTGCTTGTCTTGCTCAGGGGAGTAGCTaGAGTTCGGCCTCATGTAGATGTAACTGGCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: RVRSACLAQGSS*SSASCRCNWLE Trigger: CTCCAGCCAGTTACATCTACATGAGGCCGAACTCCAGCTACTCCCCTGAGCAAGACAAGCAGATCTCACTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076019.4 ENSMUST00000214477.2 |
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| CDS GCA 72 bp | CTTGCAGCGGCCCTCTGTGGACTTGATCTTGAGAATTaGCATGGCAATACGAATGTAGGAGGCCACAATGAG | + |
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Preference number: 6 (lower is better) Translates to: LAAALCGLDLEN*HGNTNVGGHNE Trigger: CTCATTGTGGCCTCCTACATTCGTATTGCCATGGCAATTCTCAAGATCAAGTCCACAGAGGGCCGCTGCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076019.4 ENSMUST00000214477.2 |
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| CDS TCA 72 bp | AATGATGTGGGTATCCATGCAAGCCAAGCTACGCACTaGAGGACCTTCACACAAGTAGTGGTTGACCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: NDVGIHASQATH*RTFTQVVVDPV Trigger: AACAGGGTCAACCACTACTTGTGTGAAGGTCCTTCAGTGCGTAGCTTGGCTTGCATGGATACCCACATCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076019.4 ENSMUST00000214477.2 |
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| CDS TCA 72 bp | CCAAAAAGACACTCAAGACCAAGTCCACCATCTCAATaGTGTGGGTATCCATGCAAGCCAAGCTACGCACTG | + |
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Preference number: 6 (lower is better) Translates to: PKRHSRPSPPSQ*CGYPCKPSYAL Trigger: CAGTGCGTAGCTTGGCTTGCATGGATACCCACATCATTGAGATGGTGGACTTGGTCTTGAGTGTCTTTTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076019.4 ENSMUST00000214477.2 |
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| CDS CCA 72 bp | GGCAATACGAATGTAGGAGGCCACAATGAGGGAGATTaGAGTAACAACCAAAAAGACACTCAAGACCAAGTC | + |
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Preference number: 6 (lower is better) Translates to: GNTNVGGHNEGD*SNNQKDTQDQV Trigger: GACTTGGTCTTGAGTGTCTTTTTGGTTGTTACTCCAATCTCCCTCATTGTGGCCTCCTACATTCGTATTGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076019.4 ENSMUST00000214477.2 |
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