RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1295 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000108919

Ensembl transcript IDs: ENSMUST00000207283.3, ENSMUST00000207786.3, ENSMUST00000217772.2

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCATTGCTGATCTCTCACTCCACCATGATCCTCTCTGCCAATCCTTaGAAACAAATGACCAGGTCTTGTCAGAGTCCTGACTCTCCTGTT +
Preference number: 1 (lower is better)
Translates to: PLLISHSTMILSANP*KQMTRSCQSPDSPV
Trigger: AACAGGAGAGTCAGGACTCTGACAAGACCTGGTCATTTGTTTTCAAGGATTGGCAGAGAGGATCATGGTGGAGTGAGAGATCAGCAATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR TCA 90 bp AATACGTTGTTTATTCATCAACAGGCTGTTTCCACATGGCTATGGTaGACAAACAAGGGCAAAAGCAATAATGTTGGCAGCACCACTGAT +
Preference number: 1 (lower is better)
Translates to: NTLFIHQQAVSTWLW*TNKGKSNNVGSTTD
Trigger: ATCAGTGGTGCTGCCAACATTATTGCTTTTGCCCTTGTTTGTTCACCATAGCCATGTGGAAACAGCCTGTTGATGAATAAACAACGTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR TCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTTCCACATGGCTATGGTaGACAAACAAGGGCAAAAGC +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFASTWLW*TNKGKS
Trigger: GCTTTTGCCCTTGTTTGTTCACCATAGCCATGTGGA...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR GCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTAAATTGCATAACAAATaGTACCAGGCACCAGCCCAC +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFAKLHNK*YQAPAH
Trigger: GTGGGCTGGTGCCTGGTAGCATTTGTTATGCAATTT...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR TCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTGTAAAAGATCTGAACTaGCCATTGCTGATCTCTCAC +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFAVKDLN*PLLISH
Trigger: GTGAGAGATCAGCAATGGTCAGTTCAGATCTTTTAC...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR CAA 90 bp TTTTCTCTGCCAGACTACTGCCATTATTATAATAGTAGATATATCTaGACAGGTAAGTTTCTATTTTCCCATCCAGGGTCTAGAGTAGGG +
Preference number: 2 (lower is better)
Translates to: FSLPDYCHYYNSRYI*TGKFLFSHPGSRVG
Trigger: CCCTACTCTAGACCCTGGATGGGAAAATAGAAACTTACCTGTCAAGATATATCTACTATTATAATAATGGCAGTAGTCTGGCAGAGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR TCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTCAAAGCTGGTCCATGTaGAGTTTATCACTTCATTTC +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFAQSWSM*SLSLHF
Trigger: GAAATGAAGTGATAAACTTCACATGGACCAGCTTTG...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR GCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTCACCATGATCCTCTCTaGCAATCCTTGAAAACAAAT +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFAHHDPL*QSLKTN
Trigger: ATTTGTTTTCAAGGATTGGCAGAGAGGATCATGGTG...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR CCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTCAAAACATGTGGCAATaGCATGATTGTCTACCATTG +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFAQNMWQ*HDCLPL
Trigger: CAATGGTAGACAATCATGCCATTGCCACATGTTTTG...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR TCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTGCAAGTCTCAACATGTaGGGAAATTACTACACAATT +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFAASLNM*GNYYTI
Trigger: AATTGTGTAGTAATTTCCTCACATGTTGAGACTTGC...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR GCA 90 bp ACATGGGACAAAGACAGAATCTTCTACAAATCTTGTTTGGAAAATGGATGCCTACTGAAACTAGTAAGCTaGTTGAATGGCTTTCAAGTT +
Preference number: 2 (lower is better)
Translates to: TWDKDRIFYKSCLENGCLLKLVS*LNGFQV
Trigger: AACTTGAAAGCCATTCAAGCAGCTTACTAGTTTCAG...TAGGCATCCATTTTCCAAACAAGATTTGTAGAAGATTCTGTCTTTGTCCCATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR GCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTTCTCTGCCAGACTACTaGCATTATTATAATAGTAGA +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFASLPDY*HYYNSR
Trigger: TCTACTATTATAATAATGGCAGTAGTCTGGCAGAGA...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR CCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTGATGATGAAATAACATaGGACAAAGACAGAATCTTC +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFADDEIT*DKDRIF
Trigger: GAAGATTCTGTCTTTGTCCCATGTTATTTCATCATC...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR CCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTCTAGCAAGAACAATTTaGAAGCACAAAGATTACCAA +
Preference number: 2 (lower is better)
Translates to: KREREKIMFLRTPSTIFALARTI*KHKDYQ
Trigger: TTGGTAATCTTTGTGCTTCCAAATTGTTCTTGCTAG...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR GCA 72 bp ACCATTGCTGATCTCTCACTCCACCATGATCCTCTCTaGCAATCCTTGAAAACAAATGACCAGGTCTTGTCA +
Preference number: 3 (lower is better)
Translates to: TIADLSLHHDPL*QSLKTNDQVLS
Trigger: TGACAAGACCTGGTCATTTGTTTTCAAGGATTGGCAGAGAGGATCATGGTGGAGTGAGAGATCAGCAATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR TCA 72 bp TCCTTGAAAACAAATGACCAGGTCTTGTCAGAGTCCTaGCTCTCCTGTTATTCCTTTCATCTTTCCCCAGTA +
Preference number: 3 (lower is better)
Translates to: SLKTNDQVLSES*LSCYSFHLSPV
Trigger: TACTGGGGAAAGATGAAAGGAATAACAGGAGAGTCAGGACTCTGACAAGACCTGGTCATTTGTTTTCAAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR CAA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTAGGCACCAGCCCACATaGACAGATGTGTTAAGAGAC +
Preference number: 3 (lower is better)
Translates to: KREREKIMFLRTPSTIFARHQPT*TDVLRD
Trigger: GTCTCTTAACACATCTGTCAATGTGGGCTGGTGCCT...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR TCA 72 bp TTTATTCATCAACAGGCTGTTTCCACATGGCTATGGTaGACAAACAAGGGCAAAAGCAATAATGTTGGCAGC +
Preference number: 3 (lower is better)
Translates to: FIHQQAVSTWLW*TNKGKSNNVGS
Trigger: GCTGCCAACATTATTGCTTTTGCCCTTGTTTGTTCACCATAGCCATGTGGAAACAGCCTGTTGATGAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR CAA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTCCTCTCTGCCAATCCTaGAAAACAAATGACCAGGTC +
Preference number: 3 (lower is better)
Translates to: KREREKIMFLRTPSTIFAPLCQS*KTNDQV
Trigger: GACCTGGTCATTTGTTTTCAAGGATTGGCAGAGAGG...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR-3UTR CAA 90 bp ACATGGGACAAAGACAGAATCTTCTACAAATCTTGTTTGGAAAATGGATGCCTAGCAAAAGCAATAATGTaGGCAGCACCACTGATCAAC +
Preference number: 3 (lower is better)
Translates to: TWDKDRIFYKSCLENGCLAKAIM*AAPLIN
Trigger: GTTGATCAGTGGTGCTGCCAACATTATTGCTTTTGC...TAGGCATCCATTTTCCAAACAAGATTTGTAGAAGATTCTGTCTTTGTCCCATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR CCA 72 bp TGTGTTAAGAGACCTGCAAATATTCACCAAAGATCGTaGATAAATACAAGATCTAGTAAAAGATCTGAACTG +
Preference number: 3 (lower is better)
Translates to: CVKRPANIHQRS*INTRSSKRSEL
Trigger: CAGTTCAGATCTTTTACTAGATCTTGTATTTATCCACGATCTTTGGTGAATATTTGCAGGTCTCTTAACACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR CAA 72 bp GGCTATGGTGAACAAACAAGGGCAAAAGCAATAATGTaGGCAGCACCACTGATCAACAGCAACATATGTGGA +
Preference number: 4 (lower is better)
Translates to: GYGEQTRAKAIM*AAPLINSNICG
Trigger: TCCACATATGTTGCTGTTGATCAGTGGTGCTGCCAACATTATTGCTTTTGCCCTTGTTTGTTCACCATAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR CAA 72 bp AATTGCATAACAAATGCTACCAGGCACCAGCCCACATaGACAGATGTGTTAAGAGACCTGCAAATATTCACC +
Preference number: 4 (lower is better)
Translates to: NCITNATRHQPT*TDVLRDLQIFT
Trigger: GGTGAATATTTGCAGGTCTCTTAACACATCTGTCAATGTGGGCTGGTGCCTGGTAGCATTTGTTATGCAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR TCA 90 bp ACATGGGACAAAGACAGAATCTTCTACAAATCTTGTTTGGAAAATGGATGCCTACTGGAGTATAAATTCTaGCACAACAGACCGGTTGCC +
Preference number: 4 (lower is better)
Translates to: TWDKDRIFYKSCLENGCLLEYKF*HNRPVA
Trigger: GGCAACCGGTCTGTTGTGTCAGAATTTATACTCCAG...TAGGCATCCATTTTCCAAACAAGATTTGTAGAAGATTCTGTCTTTGTCCCATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR TCA 90 bp TTTGCGGAATATATGGTTGTGTACAGAATTATACTCGGGAAGAAATACCAGTATAGATCATCACTACAGTaGTGTGGGCACTGCAAGTGG +
Preference number: 4 (lower is better)
Translates to: FAEYMVVYRIILGKKYQYRSSLQ*CGHCKW
Trigger: CCACTTGCAGTGCCCACATCACTGTAGTGATGATCT...ATACTGGTATTTCTTCCCGAGTATAATTCTGTACACAACCATATATTCCGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR GCA 90 bp ACATGGGACAAAGACAGAATCTTCTACAAATCTTGTTTGGAAAATGGATGCCTAGGACAAAGCCTTAGATaGTCCAGCTTTAGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: TWDKDRIFYKSCLENGCLGQSLR*SSFRAL
Trigger: AAGAGCTCTAAAGCTGGAGCATCTAAGGCTTTGTCC...TAGGCATCCATTTTCCAAACAAGATTTGTAGAAGATTCTGTCTTTGTCCCATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CCA 90 bp TTTGCGGAATATATGGTTGTGTACAGAATTATACTCGGGAAGAAATACCAGTATATCACTACAGTGATGTaGGCACTGCAAGTGGACAAA +
Preference number: 4 (lower is better)
Translates to: FAEYMVVYRIILGKKYQYITTVM*ALQVDK
Trigger: TTTGTCCACTTGCAGTGCCCACATCACTGTAGTGAT...ATACTGGTATTTCTTCCCGAGTATAATTCTGTACACAACCATATATTCCGCAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR TCA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTCTTAGGAGTGATGTTTaGGGAAAGACACATATCAAC +
Preference number: 4 (lower is better)
Translates to: KREREKIMFLRTPSTIFALRSDV*GKTHIN
Trigger: GTTGATATGTGTCTTTCCTCAAACATCACTCCTAAG...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CCA 90 bp ACATGGGACAAAGACAGAATCTTCTACAAATCTTGTTTGGAAAATGGATGCCTATTCTCAGTGTATAAATaGTTGGATTTAGGAGAGGAG +
Preference number: 4 (lower is better)
Translates to: TWDKDRIFYKSCLENGCLFSVYK*LDLGEE
Trigger: CTCCTCTCCTAAATCCAACCATTTATACACTGAGAA...TAGGCATCCATTTTCCAAACAAGATTTGTAGAAGATTCTGTCTTTGTCCCATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CCA 90 bp ACATGGGACAAAGACAGAATCTTCTACAAATCTTGTTTGGAAAATGGATGCCTAAAAGTATTTAAATTATaGGAATCCATGCAGGCTAGC +
Preference number: 4 (lower is better)
Translates to: TWDKDRIFYKSCLENGCLKVFKL*ESMQAS
Trigger: GCTAGCCTGCATGGATTCCCATAATTTAAATACTTT...TAGGCATCCATTTTCCAAACAAGATTTGTAGAAGATTCTGTCTTTGTCCCATGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
3UTR CAA 72 bp TTGGCAAAGGAAGTAAGTAATTTGCGGAATATATGGTaGTGTACAGAATTATACTCGGGAAGAAATACCAGT +
Preference number: 4 (lower is better)
Translates to: LAKEVSNLRNIW*CTELYSGRNTS
Trigger: ACTGGTATTTCTTCCCGAGTATAATTCTGTACACAACCATATATTCCGCAAATTACTTACTTCCTTTGCCAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CAA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTTCCATGCAGGCTAGCTaGATTATAAGTGGCATGTCA +
Preference number: 5 (lower is better)
Translates to: KREREKIMFLRTPSTIFASMQAS*IISGMS
Trigger: TGACATGCCACTTATAATCAAGCTAGCCTGCATGGA...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CAA 90 bp TTTGCGGAATATATGGTTGTGTACAGAATTATACTCGGGAAGAAATACCAGTATCCAGCTTTAGAGCTCTaGCTAACAGTGACAAGGATG +
Preference number: 5 (lower is better)
Translates to: FAEYMVVYRIILGKKYQYPALEL*LTVTRM
Trigger: CATCCTTGTCACTGTTAGCAAGAGCTCTAAAGCTGG...ATACTGGTATTTCTTCCCGAGTATAATTCTGTACACAACCATATATTCCGCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CAA 90 bp ACATGGGACAAAGACAGAATCTTCTACAAATCTTGTTTGGAAAATGGATGCCTAAGACCTGAATATTTTTaGAGTGGGAAAGTCCCTGGA +
Preference number: 5 (lower is better)
Translates to: TWDKDRIFYKSCLENGCLRPEYF*SGKVPG
Trigger: TCCAGGGACTTTCCCACTCAAAAAATATTCAGGTCT...TAGGCATCCATTTTCCAAACAAGATTTGTAGAAGATTCTGTCTTTGTCCCATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CAA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTAAACTGTCTATTTCCTaGGGACCACAAAAAGGCAGA +
Preference number: 5 (lower is better)
Translates to: KREREKIMFLRTPSTIFAKLSIS*GPQKGR
Trigger: TCTGCCTTTTTGTGGTCCCAAGGAAATAGACAGTTT...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CAA 90 bp AAGAGAGAGAGAGAGAAAATTATGTTTCTAAGAACCCCTAGCACAATCTTTGCTGCAAAGGAAATGGTCTaGTTTTCCCTGAGAAAATCT +
Preference number: 5 (lower is better)
Translates to: KREREKIMFLRTPSTIFAAKEMV*FSLRKS
Trigger: AGATTTTCTCAGGGAAAACAAGACCATTTCCTTTGC...AGCAAAGATTGTGCTAGGGGTTCTTAGAAACATAATTTTCTCTCTCTCTCTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS-3UTR CAA 90 bp TTTGCGGAATATATGGTTGTGTACAGAATTATACTCGGGAAGAAATACCAGTATTTGGGACCTAGAAATTaGCCTATGAATCTTTTCATG +
Preference number: 5 (lower is better)
Translates to: FAEYMVVYRIILGKKYQYLGPRN*PMNLFM
Trigger: CATGAAAAGATTCATAGGCAAATTTCTAGGTCCCAA...ATACTGGTATTTCTTCCCGAGTATAATTCTGTACACAACCATATATTCCGCAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217772.2
CDS CAA 72 bp AAAGTATTTAAATTATGGGAATCCATGCAGGCTAGCTaGATTATAAGTGGCATGTCACAAAAGAAACTGTCT +
Preference number: 6 (lower is better)
Translates to: KVFKLWESMQAS*IISGMSQKKLS
Trigger: AGACAGTTTCTTTTGTGACATGCCACTTATAATCAAGCTAGCCTGCATGGATTCCCATAATTTAAATACTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000207283.3
ENSMUST00000207786.3
ENSMUST00000217772.2