Pregenerated sensors for OLFR1222 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075101Ensembl transcript IDs: ENSMUST00000099794.2, ENSMUST00000214027.2, ENSMUST00000215816.3
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTTCCCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTaGTGGCATACAGGACCTCCTGTTTGTATAGTAAGTAATCTTCCC | + |
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Preference number: 1 (lower is better) Translates to: GSLLYLFFTYGFRHE*WHTGPPVCIVSNLP Trigger: GGGAAGATTACTTACTATACAAACAGGAGGTCCTGTATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGAACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR CCA 90 bp | TCCCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTGCTaGCATACAGGACCTCCTGTTTGTATAGTAAGTAATCTTCCCAAT | + |
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Preference number: 1 (lower is better) Translates to: SLLYLFFTYGFRHEC*HTGPPVCIVSNLPN Trigger: ATTGGGAAGATTACTTACTATACAAACAGGAGGTCCTGTATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR TCA 90 bp | GTAGCCCTATACCTAATTTCCTTGAGACAAGTTATCACTGAACCTTaGACACTGTCTCTACTAGATGAGCCATCCTCTGAGCTTTTGAAA | + |
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Preference number: 1 (lower is better) Translates to: VALYLISLRQVITEP*TLSLLDEPSSELLK Trigger: TTTCAAAAGCTCAGAGGATGGCTCATCTAGTAGAGACAGTGTTCAAGGTTCAGTGATAACTTGTCTCAAGGAAATTAGGTATAGGGCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR-3UTR CCA 90 bp | GTTCCCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTGCTGGCATAGCCTGGCTTCTGGCATaGGTTCTGGTACAAAGGACT | + |
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Preference number: 2 (lower is better) Translates to: VPCCTCFSHMVSDMSAGIAWLLA*VLVQRT Trigger: AGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGC...TATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR-3UTR CCA 90 bp | TTGTGTACCACATGGGCAACTGCTGCCTTAGGAAGCCAGAAGAAAATAGTAGATCCAATGCCTGGCTTCTaGCATGGGTTCTGGTACAAA | + |
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Preference number: 2 (lower is better) Translates to: LCTTWATAALGSQKKIVDPMPGF*HGFWYK Trigger: TTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGG...ATCTACTATTTTCTTCTGGCTTCCTAAGGCAGCAGTTGCCCATGTGGTACACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| 3UTR CAA 90 bp | GTAAGCTATTTAAAAACTATGTATGGCTGTTTTACTTGCATGTGTTaGTGTACCACATGGGCAACTGCTGCCTTAGGAAGCCAGAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: VSYLKTMYGCFTCMC*CTTWATAALGSQKK Trigger: TTTCTTCTGGCTTCCTAAGGCAGCAGTTGCCCATGTGGTACACAAACACATGCAAGTAAAACAGCCATACATAGTTTTTAAATAGCTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| 3UTR-3UTR GCA 90 bp | CATCTTTCTGCCTTTGTAGGTTTTAATGCCTTATGGTGTCCCTTAGAAATCTTTTATGGCTGTTTTACTTaGATGTGTTTGTGTACCACA | + |
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Preference number: 2 (lower is better) Translates to: HLSAFVGFNALWCPLEIFYGCFT*MCLCTT Trigger: TGTGGTACACAAACACATGCAAGTAAAACAGCCATA...AAAGATTTCTAAGGGACACCATAAGGCATTAAAACCTACAAAGGCAGAAAGATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| 3UTR CAA 90 bp | ATTTATAATTGTAAGCTATTTAAAAACTATGTATGGCTGTTTTACTaGCATGTGTTTGTGTACCACATGGGCAACTGCTGCCTTAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: IYNCKLFKNYVWLFY*HVFVYHMGNCCLRK Trigger: CTTCCTAAGGCAGCAGTTGCCCATGTGGTACACAAACACATGCAAGTAAAACAGCCATACATAGTTTTTAAATAGCTTACAATTATAAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| 3UTR TCA 72 bp | TGTTGCATCAGAAGGTGCTTAGGAGTATTGTCCTACTaGACTGGGTCACAGAGCTCATTAGATTGGGGTAGT | + |
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Preference number: 3 (lower is better) Translates to: CCIRRCLGVLSY*TGSQSSLDWGS Trigger: ACTACCCCAATCTAATGAGCTCTGTGACCCAGTTCAGTAGGACAATACTCCTAAGCACCTTCTGATGCAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| 3UTR TCA 72 bp | CCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATaGGTGCTGGCATACAGGACCTCCTGTTTGTATAGT | + |
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Preference number: 3 (lower is better) Translates to: PAVPVFHIWFQT*VLAYRTSCLYS Trigger: ACTATACAAACAGGAGGTCCTGTATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR GCA 72 bp | TTTTACTTGCATGTGTTTGTGTACCACATGGGCAACTaGTGCCTTAGGAAGCCAGAAGAAAATAGTAGATCC | + |
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Preference number: 3 (lower is better) Translates to: FYLHVFVYHMGN*CLRKPEENSRS Trigger: GGATCTACTATTTTCTTCTGGCTTCCTAAGGCAGCAGTTGCCCATGTGGTACACAAACACATGCAAGTAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| 3UTR TCA 72 bp | TACCTAATTTCCTTGAGACAAGTTATCACTGAACCTTaGACACTGTCTCTACTAGATGAGCCATCCTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: YLISLRQVITEP*TLSLLDEPSSE Trigger: CTCAGAGGATGGCTCATCTAGTAGAGACAGTGTTCAAGGTTCAGTGATAACTTGTCTCAAGGAAATTAGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR GCA 72 bp | CTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTaGTGGCATACAGGACCTCCTGTTTGTATAGTAAGT | + |
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Preference number: 3 (lower is better) Translates to: LYLFFTYGFRHE*WHTGPPVCIVS Trigger: ACTTACTATACAAACAGGAGGTCCTGTATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR CCA 72 bp | ATAGTAAGTAATCTTCCCAATGCCTGGCTTCTGGCATaGGTTCTGGTACAAAGGACTAATGGTTATATAGAG | + |
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Preference number: 3 (lower is better) Translates to: IVSNLPNAWLLA*VLVQRTNGYIE Trigger: CTCTATATAACCATTAGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGGGAAGATTACTTACTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR GCA 72 bp | TGTTTCATCTTCATTAGCACTAGATTAAAGGTTCCCTaGTGTACCTGTTTTTCACATATGGTTTCAGACATG | + |
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Preference number: 3 (lower is better) Translates to: CFIFISTRLKVP*CTCFSHMVSDM Trigger: CATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGAACCTTTAATCTAGTGCTAATGAAGATGAAACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR TCA 72 bp | CCAAAAGATCCTAGCTCATCTAGTAATACTTTGTCATaGAATTCAAGAACTAACTCAAAACTTCTCCCAGAA | + |
|
Preference number: 3 (lower is better) Translates to: PKDPSSSSNTLS*NSRTNSKLLPE Trigger: TTCTGGGAGAAGTTTTGAGTTAGTTCTTGAATTTCATGACAAAGTATTACTAGATGAGCTAGGATCTTTTGG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| CDS-3UTR GCA 90 bp | TTCCCAATGCCTGGCTTCTGGCATGGGTTCTGGTACAAAGGACTAATGGTTATACCACCATTACGAGAGTaGCACAGAGCCTCCTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: FPMPGFWHGFWYKGLMVIPPLRE*HRASWS Trigger: TGACCAGGAGGCTCTGTGGCACTCTCGTAATGGTGG...TATAACCATTAGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR GCA 90 bp | TTCCCAATGCCTGGCTTCTGGCATGGGTTCTGGTACAAAGGACTAATGGTTATATCAGTGCAGGCAAGCTaGAGTAATGGGAACAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: FPMPGFWHGFWYKGLMVISVQAS*SNGNKS Trigger: TGACTTGTTCCCATTACTGCAGCTTGCCTGCACTGA...TATAACCATTAGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR GCA 90 bp | TTCCCAATGCCTGGCTTCTGGCATGGGTTCTGGTACAAAGGACTAATGGTTATAAAATGTGTGTGTCAGTaGAGGCAAGCTGCAGTAATG | + |
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Preference number: 4 (lower is better) Translates to: FPMPGFWHGFWYKGLMVIKCVCQ*RQAAVM Trigger: CATTACTGCAGCTTGCCTGCACTGACACACACATTT...TATAACCATTAGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR TCA 90 bp | CTGGTACAAAGGACTAATGGTTATATAGAGTTCTCTTCCACACTGATACATCTCCGTCCTTCTGAGCTGTaGCCTCTTAGAGAGAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LVQRTNGYIEFSSTLIHLRPSEL*PLREKR Trigger: CCTCTTCTCTCTAAGAGGTCACAGCTCAGAAGGACG...GAGATGTATCAGTGTGGAAGAGAACTCTATATAACCATTAGTCCTTTGTACCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR GCA 90 bp | TTATATAGAGTTCTCTTCCACACTGATACATCTCCCCAGCATGATAAGCAATATCCACCATTACGAGAGTaGCACAGAGCCTCCTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: LYRVLFHTDTSPQHDKQYPPLRE*HRASWS Trigger: TGACCAGGAGGCTCTGTGGCACTCTCGTAATGGTGG...ATATTGCTTATCATGCTGGGGAGATGTATCAGTGTGGAAGAGAACTCTATATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR GCA 90 bp | GTTCCCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTGCTGGCATAAAATGTGTGTGTCAGTaGAGGCAAGCTGCAGTAATG | + |
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Preference number: 4 (lower is better) Translates to: VPCCTCFSHMVSDMSAGIKCVCQ*RQAAVM Trigger: CATTACTGCAGCTTGCCTGCACTGACACACACATTT...TATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR CCA 90 bp | CCCAATGCCTGGCTTCTGGCATGGGTTCTGGTACAAAGGACTAATGGTTATATATTAAGAAGAAGTACATaGGGGAACTCAACAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: PNAWLLAWVLVQRTNGYILRRST*GNSTVQ Trigger: CTGCACTGTTGAGTTCCCCCATGTACTTCTTCTTAA...TATATAACCATTAGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR CCA 90 bp | TTCCCAATGCCTGGCTTCTGGCATGGGTTCTGGTACAAAGGACTAATGGTTATAACTCCTGCAAAGAAGTaGCTAGTAAACAGTTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: FPMPGFWHGFWYKGLMVITPAKK*LVNSCV Trigger: CACACAACTGTTTACTAGCCACTTCTTTGCAGGAGT...TATAACCATTAGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR TCA 90 bp | CTGGTACAAAGGACTAATGGTTATATAGAGTTCTCTTCCACACTGATACATCTCAGAGCCTCCTGGTCATaGTGGAAGAGTAGTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LVQRTNGYIEFSSTLIHLRASWS*WKSSEE Trigger: CTCTTCACTACTCTTCCATCATGACCAGGAGGCTCT...GAGATGTATCAGTGTGGAAGAGAACTCTATATAACCATTAGTCCTTTGTACCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR CCA 90 bp | TTGTGTACCACATGGGCAACTGCTGCCTTAGGAAGCCAGAAGAAAATAGTAGATCATAGGATTGAACAATaGTGTCAGGACAGAGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: LCTTWATAALGSQKKIVDHRIEQ*CQDRGK Trigger: TTTGCCTCTGTCCTGACACCATTGTTCAATCCTATG...ATCTACTATTTTCTTCTGGCTTCCTAAGGCAGCAGTTGCCCATGTGGTACACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| CDS-3UTR TCA 90 bp | TTATATAGAGTTCTCTTCCACACTGATACATCTCCCCAGCATGATAAGCAATATAGAGCCTCCTGGTCATaGTGGAAGAGTAGTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LYRVLFHTDTSPQHDKQYRASWS*WKSSEE Trigger: CTCTTCACTACTCTTCCATCATGACCAGGAGGCTCT...ATATTGCTTATCATGCTGGGGAGATGTATCAGTGTGGAAGAGAACTCTATATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR TCA 90 bp | GTTCCCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTGCTGGCATATTAGAGAGAAGAGGATaGCACCATAGGAAACAATCA | + |
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Preference number: 4 (lower is better) Translates to: VPCCTCFSHMVSDMSAGILERRG*HHRKQS Trigger: TGATTGTTTCCTATGGTGTCATCCTCTTCTCTCTAA...TATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR TCA 90 bp | CCCAATGCCTGGCTTCTGGCATGGGTTCTGGTACAAAGGACTAATGGTTATATATCCTACACATTTTCCTaGTGGCATTCTTCATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: PNAWLLAWVLVQRTNGYISYTFS*WHSSFL Trigger: AAGAAATGAAGAATGCCATCAGGAAAATGTGTAGGA...TATATAACCATTAGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR GCA 90 bp | GTTCCCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTGCTGGCATAAATCACCTCAACTCCTaGAAAGAAGTGGCTAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: VPCCTCFSHMVSDMSAGINHLNS*KEVASK Trigger: TTTACTAGCCACTTCTTTGCAGGAGTTGAGGTGATT...TATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR GCA 90 bp | TTGTGTACCACATGGGCAACTGCTGCCTTAGGAAGCCAGAAGAAAATAGTAGATAATCACCTCAACTCCTaGAAAGAAGTGGCTAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: LCTTWATAALGSQKKIVDNHLNS*KEVASK Trigger: TTTACTAGCCACTTCTTTGCAGGAGTTGAGGTGATT...ATCTACTATTTTCTTCTGGCTTCCTAAGGCAGCAGTTGCCCATGTGGTACACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| CDS-3UTR CCA 90 bp | TTCCCAATGCCTGGCTTCTGGCATGGGTTCTGGTACAAAGGACTAATGGTTATAAACATTCAAAGGAGATaGTCTTCCTCTCATAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: FPMPGFWHGFWYKGLMVINIQRR*SSSHRR Trigger: TCTTCTATGAGAGGAAGACCATCTCCTTTGAATGTT...TATAACCATTAGTCCTTTGTACCAGAACCCATGCCAGAAGCCAGGCATTGGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR CAA 72 bp | ACACTGTCTCTACTAGATGAGCCATCCTCTGAGCTTTaGAAATCCACCTGTTTCATCTTCATTAGCACTAGA | + |
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Preference number: 4 (lower is better) Translates to: TLSLLDEPSSEL*KSTCFIFISTR Trigger: TCTAGTGCTAATGAAGATGAAACAGGTGGATTTCAAAAGCTCAGAGGATGGCTCATCTAGTAGAGACAGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR CAA 72 bp | TTAAAAACTATGTATGGCTGTTTTACTTGCATGTGTTaGTGTACCACATGGGCAACTGCTGCCTTAGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LKTMYGCFTCMC*CTTWATAALGS Trigger: GCTTCCTAAGGCAGCAGTTGCCCATGTGGTACACAAACACATGCAAGTAAAACAGCCATACATAGTTTTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| CDS-3UTR CCA 90 bp | GTTCCCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTGCTGGCATAAACATTCAAAGGAGATaGTCTTCCTCTCATAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VPCCTCFSHMVSDMSAGINIQRR*SSSHRR Trigger: TCTTCTATGAGAGGAAGACCATCTCCTTTGAATGTT...TATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR CCA 90 bp | CTGGTACAAAGGACTAATGGTTATATAGAGTTCTCTTCCACACTGATACATCTCTTAAGAAGAAGTACATaGGGGAACTCAACAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LVQRTNGYIEFSSTLIHLLRRST*GNSTVQ Trigger: CTGCACTGTTGAGTTCCCCCATGTACTTCTTCTTAA...GAGATGTATCAGTGTGGAAGAGAACTCTATATAACCATTAGTCCTTTGTACCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR CCA 90 bp | TTATATAGAGTTCTCTTCCACACTGATACATCTCCCCAGCATGATAAGCAATATCATAGGATTGAACAATaGTGTCAGGACAGAGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: LYRVLFHTDTSPQHDKQYHRIEQ*CQDRGK Trigger: TTTGCCTCTGTCCTGACACCATTGTTCAATCCTATG...ATATTGCTTATCATGCTGGGGAGATGTATCAGTGTGGAAGAGAACTCTATATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| 3UTR CAA 72 bp | TGTAAGCTATTTAAAAACTATGTATGGCTGTTTTACTaGCATGTGTTTGTGTACCACATGGGCAACTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: CKLFKNYVWLFY*HVFVYHMGNCC Trigger: GCAGCAGTTGCCCATGTGGTACACAAACACATGCAAGTAAAACAGCCATACATAGTTTTTAAATAGCTTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| 3UTR CAA 72 bp | TGCAACCTCAGGTATCTTTTGCAGGCTCTTGTTCATTaGCTCTGTCATCTAAAATTAGGGAGAAACAAACAT | + |
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Preference number: 4 (lower is better) Translates to: CNLRYLLQALVH*LCHLKLGRNKH Trigger: ATGTTTGTTTCTCCCTAATTTTAGATGACAGAGCAAATGAACAAGAGCCTGCAAAAGATACCTGAGGTTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| 3UTR CAA 72 bp | CTTTCCAATGTGAAATCATGCAACCTCAGGTATCTTTaGCAGGCTCTTGTTCATTTGCTCTGTCATCTAAAA | + |
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Preference number: 4 (lower is better) Translates to: LSNVKSCNLRYL*QALVHLLCHLK Trigger: TTTTAGATGACAGAGCAAATGAACAAGAGCCTGCAAAAGATACCTGAGGTTGCATGATTTCACATTGGAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215816.3 |
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| CDS-3UTR TCA 90 bp | TTATATAGAGTTCTCTTCCACACTGATACATCTCCCCAGCATGATAAGCAATATTTAGAGAGAAGAGGATaGCACCATAGGAAACAATCA | + |
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Preference number: 4 (lower is better) Translates to: LYRVLFHTDTSPQHDKQYLERRG*HHRKQS Trigger: TGATTGTTTCCTATGGTGTCATCCTCTTCTCTCTAA...ATATTGCTTATCATGCTGGGGAGATGTATCAGTGTGGAAGAGAACTCTATATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR TCA 90 bp | CTGGTACAAAGGACTAATGGTTATATAGAGTTCTCTTCCACACTGATACATCTCTCCTACACATTTTCCTaGTGGCATTCTTCATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LVQRTNGYIEFSSTLIHLSYTFS*WHSSFL Trigger: AAGAAATGAAGAATGCCATCAGGAAAATGTGTAGGA...GAGATGTATCAGTGTGGAAGAGAACTCTATATAACCATTAGTCCTTTGTACCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR CAA 90 bp | GTTCCCTGCTGTACCTGTTTTTCACATATGGTTTCAGACATGAGTGCTGGCATAAAGTCTACAATCATCTaGGGGGTGACAGTAGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: VPCCTCFSHMVSDMSAGIKSTII*GVTVEE Trigger: TTCCTCTACTGTCACCCCCAAGATGATTGTAGACTT...TATGCCAGCACTCATGTCTGAAACCATATGTGAAAAACAGGTACAGCAGGGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS-3UTR CAA 90 bp | CTGGTACAAAGGACTAATGGTTATATAGAGTTCTCTTCCACACTGATACATCTCAAGTCTACAATCATCTaGGGGGTGACAGTAGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: LVQRTNGYIEFSSTLIHLKSTII*GVTVEE Trigger: TTCCTCTACTGTCACCCCCAAGATGATTGTAGACTT...GAGATGTATCAGTGTGGAAGAGAACTCTATATAACCATTAGTCCTTTGTACCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214027.2 ENSMUST00000215816.3 |
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| CDS CCA 72 bp | GATGTCAAGATAATCACCTCAACTCCTGCAAAGAAGTaGCTAGTAAACAGTTGTGTGATGCAACATTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: DVKIITSTPAKK*LVNSCVMQHSK Trigger: CTTTGAATGTTGCATCACACAACTGTTTACTAGCCACTTCTTTGCAGGAGTTGAGGTGATTATCTTGACATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099794.2 ENSMUST00000214027.2 ENSMUST00000215816.3 |
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