RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1212 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048226

Ensembl transcript IDs: ENSMUST00000055895.3, ENSMUST00000215781.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGTTCCTTCTGCCTATGGATTCTGCAGTTTATCTTGTCCCACCTTaGTATTTGGCATATGATACTTTCTATGGCATATGGGGTAGAGCA +
Preference number: 1 (lower is better)
Translates to: LFLLPMDSAVYLVPP*YLAYDTFYGIWGRA
Trigger: TGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAGGAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR CCA 90 bp CTTGTCCCACCTTGGTATTTGGCATATGATACTTTCTATGGCATATaGGGTAGAGCACGACAGAGAAATTTCCATGGGTTTGAAGACATT +
Preference number: 1 (lower is better)
Translates to: LVPPWYLAYDTFYGI*GRARQRNFHGFEDI
Trigger: AATGTCTTCAAACCCATGGAAATTTCTCTGTCGTGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAGGTGGGACAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR TCA 90 bp TTCTCCCTCCTAAGCTTGGCAAATCAGTACCTCTATCGTGAATCTTaGCTTATTTTTCACATCCTTTGTATTTCCCTGTCCTCTCCTTTG +
Preference number: 1 (lower is better)
Translates to: FSLLSLANQYLYRES*LIFHILCISLSSPL
Trigger: CAAAGGAGAGGACAGGGAAATACAAAGGATGTGAAAAATAAGTCAAGATTCACGATAGAGGTACTGATTTGCCAAGCTTAGGAGGGAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR TCA 90 bp ACAATGTTTCTCCCTCCTAAGCTTGGCAAATCAGTACCTCTATCGTaGATCTTGACTTATTTTTCACATCCTTTGTATTTCCCTGTCCTC +
Preference number: 1 (lower is better)
Translates to: TMFLPPKLGKSVPLS*ILTYFSHPLYFPVL
Trigger: GAGGACAGGGAAATACAAAGGATGTGAAAAATAAGTCAAGATTCACGATAGAGGTACTGATTTGCCAAGCTTAGGAGGGAGAAACATTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR GCA 90 bp TTCCTAACCATTACATATGAACATAAAATGGCATTCTGTTCCTTCTaGCTATGGATTCTGCAGTTTATCTTGTCCCACCTTGGTATTTGG +
Preference number: 1 (lower is better)
Translates to: FLTITYEHKMAFCSF*LWILQFILSHLGIW
Trigger: CCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAGGAACAGAATGCCATTTTATGTTCATATGTAATGGTTAGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR CCA 90 bp ACCATTACATATGAACATAAAATGGCATTCTGTTCCTTCTGCCTATaGATTCTGCAGTTTATCTTGTCCCACCTTGGTATTTGGCATATG +
Preference number: 1 (lower is better)
Translates to: TITYEHKMAFCSFCL*ILQFILSHLGIWHM
Trigger: CATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAGGAACAGAATGCCATTTTATGTTCATATGTAATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR TCA 90 bp AGAGCACGACAGAGAAATTTCCATGGGTTTGAAGACATTGGATTCTaGCTAAAAATATTCTTTGATTTTTCTCTACTGTCTCCCAGTTTA +
Preference number: 1 (lower is better)
Translates to: RARQRNFHGFEDIGF*LKIFFDFSLLSPSL
Trigger: TAAACTGGGAGACAGTAGAGAAAAATCAAAGAATATTTTTAGTCAGAATCCAATGTCTTCAAACCCATGGAAATTTCTCTGTCGTGCTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR CAA 90 bp AAAATGGCATTCTGTTCCTTCTGCCTATGGATTCTGCAGTTTATCTaGTCCCACCTTGGTATTTGGCATATGATACTTTCTATGGCATAT +
Preference number: 2 (lower is better)
Translates to: KMAFCSFCLWILQFI*SHLGIWHMILSMAY
Trigger: ATATGCCATAGAAAGTATCATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAGGAACAGAATGCCATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR-3UTR GCA 90 bp GTATTCCTAACCATTACATATGAACATAAAATGGCATTCTGTTCCTTCTGCCTACAAACACTATTCTGCTaGTGTCCTCAAACCCATTAT +
Preference number: 2 (lower is better)
Translates to: VFLTITYEHKMAFCSFCLQTLFC*CPQTHY
Trigger: ATAATGGGTTTGAGGACAGCAGCAGAATAGTGTTTG...TAGGCAGAAGGAACAGAATGCCATTTTATGTTCATATGTAATGGTTAGGAATAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR CCA 72 bp CCTTGGTATTTGGCATATGATACTTTCTATGGCATATaGGGTAGAGCACGACAGAGAAATTTCCATGGGTTT +
Preference number: 3 (lower is better)
Translates to: PWYLAYDTFYGI*GRARQRNFHGF
Trigger: AAACCCATGGAAATTTCTCTGTCGTGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR CCA 72 bp TGGATTCTGCAGTTTATCTTGTCCCACCTTGGTATTTaGCATATGATACTTTCTATGGCATATGGGGTAGAG +
Preference number: 3 (lower is better)
Translates to: WILQFILSHLGI*HMILSMAYGVE
Trigger: CTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR CCA 72 bp CTGCCTATGGATTCTGCAGTTTATCTTGTCCCACCTTaGTATTTGGCATATGATACTTTCTATGGCATATGG +
Preference number: 3 (lower is better)
Translates to: LPMDSAVYLVPP*YLAYDTFYGIW
Trigger: CCATATGCCATAGAAAGTATCATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR GCA 72 bp ATAAAATGGCATTCTGTTCCTTCTGCCTATGGATTCTaGAGTTTATCTTGTCCCACCTTGGTATTTGGCATA +
Preference number: 3 (lower is better)
Translates to: IKWHSVPSAYGF*SLSCPTLVFGI
Trigger: TATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAGGAACAGAATGCCATTTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR TCA 72 bp ACATATCAGTCACAAGCACAAAGCAGTGAAATAGCATaGTCTAAAAGCTTCCAAATCATACCCCTGGTGATA +
Preference number: 3 (lower is better)
Translates to: TYQSQAQSSEIA*SKSFQIIPLVI
Trigger: TATCACCAGGGGTATGATTTGGAAGCTTTTAGATCATGCTATTTCACTGCTTTGTGCTTGTGACTGATATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR GCA 72 bp ATTACATATGAACATAAAATGGCATTCTGTTCCTTCTaGCTATGGATTCTGCAGTTTATCTTGTCCCACCTT +
Preference number: 3 (lower is better)
Translates to: ITYEHKMAFCSF*LWILQFILSHL
Trigger: AAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAGGAACAGAATGCCATTTTATGTTCATATGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR-3UTR CAA 90 bp GTATTCCTAACCATTACATATGAACATAAAATGGCATTCTGTTCCTTCTGCCTAGAAATTTCCATGGGTTaGAAGACATTGGATTCTGAC +
Preference number: 3 (lower is better)
Translates to: VFLTITYEHKMAFCSFCLEISMG*KTLDSD
Trigger: GTCAGAATCCAATGTCTTCAAACCCATGGAAATTTC...TAGGCAGAAGGAACAGAATGCCATTTTATGTTCATATGTAATGGTTAGGAATAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR-3UTR CAA 90 bp GTATTCCTAACCATTACATATGAACATAAAATGGCATTCTGTTCCTTCTGCCTAGTCTCCCAGTTTATCTaGAAATTCAGAAAGCAGAAT +
Preference number: 3 (lower is better)
Translates to: VFLTITYEHKMAFCSFCLVSQFI*KFRKQN
Trigger: ATTCTGCTTTCTGAATTTCAAGATAAACTGGGAGAC...TAGGCAGAAGGAACAGAATGCCATTTTATGTTCATATGTAATGGTTAGGAATAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR GCA 72 bp CTGCTCTTAATGCATATAAAACAAACACTATTCTGCTaGTGTCCTCAAACCCATTATACCTTGGATTTAATA +
Preference number: 3 (lower is better)
Translates to: LLLMHIKQTLFC*CPQTHYTLDLI
Trigger: TATTAAATCCAAGGTATAATGGGTTTGAGGACAGCAGCAGAATAGTGTTTGTTTTATATGCATTAAGAGCAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR TCA 90 bp TATATCCCATTTCTAGTCTACCCCCGACTGTTCCACATCTCACACATCCTCCCCCGCCCTTCAGAACTGTaGCTTCTTAGAGAGAATAAG +
Preference number: 4 (lower is better)
Translates to: YIPFLVYPRLFHISHILPRPSEL*LLRENK
Trigger: CTTATTCTCTCTAAGAAGTCACAGTTCTGAAGGGCG...GGGGAGGATGTGTGAGATGTGGAACAGTCGGGGGTAGACTAGAAATGGGATATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR GCA 90 bp CTTGGTATTTGGCATATGATACTTTCTATGGCATATGGGGTAGAGCACGACAGACAAGCAGTGCAGGAGTaGAGAGGATTGTCACTGCAA +
Preference number: 4 (lower is better)
Translates to: LGIWHMILSMAYGVEHDRQAVQE*RGLSLQ
Trigger: TTGCAGTGACAATCCTCTGCACTCCTGCACTGCTTG...TCTGTCGTGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR CCA 90 bp AATGTGACTAAAGCAATTTATAGAGGAAAGAGGTTTTGGCAGGGCTGGGGATGGCCAAGAAGAAGTACATaGGTGATCCAAGCAGTGCAG +
Preference number: 4 (lower is better)
Translates to: NVTKAIYRGKRFWQGWGWPRRST*VIQAVQ
Trigger: CTGCACTGCTTGGATCACCCATGTACTTCTTCTTGG...CCATCCCCAGCCCTGCCAAAACCTCTTTCCTCTATAAATTGCTTTAGTCACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR TCA 90 bp AATGTGACTAAAGCAATTTATAGAGGAAAGAGGTTTTGGCAGGGCTGGGGATGGCTTTGGTGTGATGACTaGAGTAATGCATGCATCCAG +
Preference number: 4 (lower is better)
Translates to: NVTKAIYRGKRFWQGWGWLWCDD*SNACIQ
Trigger: CTGGATGCATGCATTACTTCAGTCATCACACCAAAG...CCATCCCCAGCCCTGCCAAAACCTCTTTCCTCTATAAATTGCTTTAGTCACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR GCA 90 bp GCTGCCAAATTACAGTGTAATTGTTATTCCCCAGTTAAAGACAATTTTTCGGTCCTATCCCCACCAGAGTaGCACAGAGCCTCCAGTTCA +
Preference number: 4 (lower is better)
Translates to: AAKLQCNCYSPVKDNFSVLSPPE*HRASSS
Trigger: TGAACTGGAGGCTCTGTGGCACTCTGGTGGGGATAG...GACCGAAAAATTGTCTTTAACTGGGGAATAACAATTACACTGTAATTTGGCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR CCA 90 bp CTTCTGCCTATGGATTCTGCAGTTTATCTTGTCCCACCTTGGTATTTGGCATATGCCTCCAGTTCATTATaGAAGAGTAGTGTAAGGGCT +
Preference number: 4 (lower is better)
Translates to: LLPMDSAVYLVPPWYLAYASSSL*KSSVRA
Trigger: AGCCCTTACACTACTCTTCCATAATGAACTGGAGGC...ATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR CCA 90 bp CTTGGTATTTGGCATATGATACTTTCTATGGCATATGGGGTAGAGCACGACAGAACCACAACAGCAATGTaGGATCCACAAGTAGAGAGA +
Preference number: 4 (lower is better)
Translates to: LGIWHMILSMAYGVEHDRTTTAM*DPQVER
Trigger: TCTCTCTACTTGTGGATCCCACATTGCTGTTGTGGT...TCTGTCGTGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR TCA 90 bp CTTGGTATTTGGCATATGATACTTTCTATGGCATATGGGGTAGAGCACGACAGATGGTTTTGCTTTCATTaGCAGAGTCAACAATCATCT +
Preference number: 4 (lower is better)
Translates to: LGIWHMILSMAYGVEHDRWFCFH*QSQQSS
Trigger: AGATGATTGTTGACTCTGTCAATGAAAGCAAAACCA...TCTGTCGTGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR GCA 90 bp CTTGGTATTTGGCATATGATACTTTCTATGGCATATGGGGTAGAGCACGACAGACTGCAATTATTATGTTaGCTCCAATTGTTGCCATGT +
Preference number: 4 (lower is better)
Translates to: LGIWHMILSMAYGVEHDRLQLLC*LQLLPC
Trigger: ACATGGCAACAATTGGAGGCAACATAATAATTGCAG...TCTGTCGTGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR CCA 90 bp CTTCTGCCTATGGATTCTGCAGTTTATCTTGTCCCACCTTGGTATTTGGCATATATCGGTCATAAGCCATaGATATTAGGACAATCACTT +
Preference number: 4 (lower is better)
Translates to: LLPMDSAVYLVPPWYLAYIGHKP*ILGQSL
Trigger: AAGTGATTGTCCTAATATCCATGGCTTATGACCGAT...ATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR CAA 72 bp TTCTGTTCCTTCTGCCTATGGATTCTGCAGTTTATCTaGTCCCACCTTGGTATTTGGCATATGATACTTTCT +
Preference number: 4 (lower is better)
Translates to: FCSFCLWILQFI*SHLGIWHMILS
Trigger: AGAAAGTATCATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAGGAACAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR TCA 90 bp GTATTCCTAACCATTACATATGAACATAAAATGGCATTCTGTTCCTTCTGCCTAAACAGTTGGGTTCTCTaGAAGTCCCAGGAGAATGAA +
Preference number: 4 (lower is better)
Translates to: VFLTITYEHKMAFCSFCLNSWVL*KSQENE
Trigger: TTCATTCTCCTGGGACTTTCAGAGAACCCAACTGTT...TAGGCAGAAGGAACAGAATGCCATTTTATGTTCATATGTAATGGTTAGGAATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR GCA 90 bp GCTGCCAAATTACAGTGTAATTGTTATTCCCCAGTTAAAGACAATTTTTCGGTCGCAGAGGATTGTCACTaGAATTATTATGTTGCCTCC +
Preference number: 4 (lower is better)
Translates to: AAKLQCNCYSPVKDNFSVAEDCH*NYYVAS
Trigger: GGAGGCAACATAATAATTGCAGTGACAATCCTCTGC...GACCGAAAAATTGTCTTTAACTGGGGAATAACAATTACACTGTAATTTGGCAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR TCA 90 bp GCTGCCAAATTACAGTGTAATTGTTATTCCCCAGTTAAAGACAATTTTTCGGTCCTTTTTCTCAAAAGATaGTGCAGATGTAGATCGTGC +
Preference number: 4 (lower is better)
Translates to: AAKLQCNCYSPVKDNFSVLFLKR*CRCRSC
Trigger: GCACGATCTACATCTGCATCATCTTTTGAGAAAAAG...GACCGAAAAATTGTCTTTAACTGGGGAATAACAATTACACTGTAATTTGGCAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
3UTR CAA 72 bp ACACTATTCTGCTGCTGTCCTCAAACCCATTATACCTaGGATTTAATATTTCTCATGATCAGTGCCCTTATA +
Preference number: 4 (lower is better)
Translates to: TLFCCCPQTHYT*DLIFLMISALI
Trigger: TATAAGGGCACTGATCATGAGAAATATTAAATCCAAGGTATAATGGGTTTGAGGACAGCAGCAGAATAGTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR GCA 90 bp GCTGCCAAATTACAGTGTAATTGTTATTCCCCAGTTAAAGACAATTTTTCGGTCGTTGCCTCCAATTGTTaGCATGTAGACAAAAGAAAA +
Preference number: 4 (lower is better)
Translates to: AAKLQCNCYSPVKDNFSVVASNC*HVDKRK
Trigger: TTTTCTTTTGTCTACATGGCAACAATTGGAGGCAAC...GACCGAAAAATTGTCTTTAACTGGGGAATAACAATTACACTGTAATTTGGCAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR GCA 90 bp GCTGCCAAATTACAGTGTAATTGTTATTCCCCAGTTAAAGACAATTTTTCGGTCTGCAGATGTAGATCGTaGATATATGAATATGCATGG +
Preference number: 4 (lower is better)
Translates to: AAKLQCNCYSPVKDNFSVCRCRS*IYEYAW
Trigger: CCATGCATATTCATATATGCACGATCTACATCTGCA...GACCGAAAAATTGTCTTTAACTGGGGAATAACAATTACACTGTAATTTGGCAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR CAA 90 bp AATGTGACTAAAGCAATTTATAGAGGAAAGAGGTTTTGGCAGGGCTGGGGATGGCAGATAGACCCACTGTaGGCAAACACTAAGAGACCA +
Preference number: 5 (lower is better)
Translates to: NVTKAIYRGKRFWQGWGWQIDPL*ANTKRP
Trigger: TGGTCTCTTAGTGTTTGCCAACAGTGGGTCTATCTG...CCATCCCCAGCCCTGCCAAAACCTCTTTCCTCTATAAATTGCTTTAGTCACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS GCA 90 bp GAAATGCCAAGAAGAAGTACATGGGTGATCCAAGCAGTGCAGGAGTaGAGAGGATTGTCACTGCAATTATTATGTTGCCTCCAATTGTTG +
Preference number: 5 (lower is better)
Translates to: EMPRRSTWVIQAVQE*RGLSLQLLCCLQLL
Trigger: CAACAATTGGAGGCAACATAATAATTGCAGTGACAATCCTCTGCACTCCTGCACTGCTTGGATCACCCATGTACTTCTTCTTGGCATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055895.3
ENSMUST00000215781.2
CDS-3UTR CAA 90 bp CTTGGTATTTGGCATATGATACTTTCTATGGCATATGGGGTAGAGCACGACAGATTATGTTGCCTCCAATaGTTGCCATGTAGACAAAAG +
Preference number: 5 (lower is better)
Translates to: LGIWHMILSMAYGVEHDRLCCLQ*LPCRQK
Trigger: CTTTTGTCTACATGGCAACAATTGGAGGCAACATAA...TCTGTCGTGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS-3UTR CAA 90 bp CTTCTGCCTATGGATTCTGCAGTTTATCTTGTCCCACCTTGGTATTTGGCATATACTGCAATTATTATGTaGCCTCCAATTGTTGCCATG +
Preference number: 5 (lower is better)
Translates to: LLPMDSAVYLVPPWYLAYTAIIM*PPIVAM
Trigger: CATGGCAACAATTGGAGGCAACATAATAATTGCAGT...ATATGCCAAATACCAAGGTGGGACAAGATAAACTGCAGAATCCATAGGCAGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS TCA 90 bp TTTGCTTTCATTGACAGAGTCAACAATCATCTTTGGTGTGATGACTaGAGTAATGCATGCATCCAGGAAGGACAGAAATGCCAAGAAGAA +
Preference number: 5 (lower is better)
Translates to: FAFIDRVNNHLWCDD*SNACIQEGQKCQEE
Trigger: TTCTTCTTGGCATTTCTGTCCTTCCTGGATGCATGCATTACTTCAGTCATCACACCAAAGATGATTGTTGACTCTGTCAATGAAAGCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055895.3
ENSMUST00000215781.2
CDS-3UTR CAA 90 bp CTTGGTATTTGGCATATGATACTTTCTATGGCATATGGGGTAGAGCACGACAGAATGGTTTTGCTTTCATaGACAGAGTCAACAATCATC +
Preference number: 5 (lower is better)
Translates to: LGIWHMILSMAYGVEHDRMVLLS*TESTII
Trigger: GATGATTGTTGACTCTGTCAATGAAAGCAAAACCAT...TCTGTCGTGCTCTACCCCATATGCCATAGAAAGTATCATATGCCAAATACCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS GCA 90 bp CAAGCAGTGCAGGAGTGCAGAGGATTGTCACTGCAATTATTATGTTaGCTCCAATTGTTGCCATGTAGACAAAAGAAAATACAACAAATA +
Preference number: 5 (lower is better)
Translates to: QAVQECRGLSLQLLC*LQLLPCRQKKIQQI
Trigger: TATTTGTTGTATTTTCTTTTGTCTACATGGCAACAATTGGAGGCAACATAATAATTGCAGTGACAATCCTCTGCACTCCTGCACTGCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055895.3
ENSMUST00000215781.2
CDS-3UTR CAA 90 bp GTATTCCTAACCATTACATATGAACATAAAATGGCATTCTGTTCCTTCTGCCTACAGGAGTGCAGAGGATaGTCACTGCAATTATTATGT +
Preference number: 5 (lower is better)
Translates to: VFLTITYEHKMAFCSFCLQECRG*SLQLLC
Trigger: ACATAATAATTGCAGTGACAATCCTCTGCACTCCTG...TAGGCAGAAGGAACAGAATGCCATTTTATGTTCATATGTAATGGTTAGGAATAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215781.2
CDS GCA 72 bp GTAAGAATCCCCCTGCCCATGCTATCCCCACCAGAGTaGCACAGAGCCTCCAGTTCATTATGGAAGAGTAGT +
Preference number: 6 (lower is better)
Translates to: VRIPLPMLSPPE*HRASSSLWKSS
Trigger: ACTACTCTTCCATAATGAACTGGAGGCTCTGTGGCACTCTGGTGGGGATAGCATGGGCAGGGGGATTCTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055895.3
ENSMUST00000215781.2
CDS GCA 72 bp AGAAGAAGTACATGGGTGATCCAAGCAGTGCAGGAGTaGAGAGGATTGTCACTGCAATTATTATGTTGCCTC +
Preference number: 6 (lower is better)
Translates to: RRSTWVIQAVQE*RGLSLQLLCCL
Trigger: GAGGCAACATAATAATTGCAGTGACAATCCTCTGCACTCCTGCACTGCTTGGATCACCCATGTACTTCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055895.3
ENSMUST00000215781.2
CDS CAA 72 bp ACATGGGTGATCCAAGCAGTGCAGGAGTGCAGAGGATaGTCACTGCAATTATTATGTTGCCTCCAATTGTTG +
Preference number: 6 (lower is better)
Translates to: TWVIQAVQECRG*SLQLLCCLQLL
Trigger: CAACAATTGGAGGCAACATAATAATTGCAGTGACAATCCTCTGCACTCCTGCACTGCTTGGATCACCCATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055895.3
ENSMUST00000215781.2
CDS TCA 72 bp GATGCCATCGAACACAGCCACCTTTTTCTCAAAAGATaGTGCAGATGTAGATCGTGCATATATGAATATGCA +
Preference number: 6 (lower is better)
Translates to: DAIEHSHLFLKR*CRCRSCIYEYA
Trigger: TGCATATTCATATATGCACGATCTACATCTGCATCATCTTTTGAGAAAAAGGTGGCTGTGTTCGATGGCATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055895.3
ENSMUST00000215781.2