RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1188 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068809

Ensembl transcript IDs: ENSMUST00000090701.5, ENSMUST00000217131.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp TTTTCCTGCCACTTAATTGGACATTACTTTCAAAGATGGATGCTTCCTTCTACAGGATTACACCACCATTaGAAGCAACCAGGAGTCCAA +
Preference number: 4 (lower is better)
Translates to: FSCHLIGHYFQRWMLPSTGLHHH*KQPGVQ
Trigger: TTGGACTCCTGGTTGCTTGCAATGGTGGTGTAATCC...TGTAGAAGGAAGCATCCATCTTTGAAAGTAATGTCCAATTAAGTGGCAGGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR CCA 90 bp CTCATGAGTTATGCATATTGTATTCTGCCAAATCTGACTCTGATTCATCATTGTTATGGTGGTTCATCCTaGAGGCATAGTGCAGAGGTC +
Preference number: 4 (lower is better)
Translates to: LMSYAYCILPNLTLIHHCYGGSS*RHSAEV
Trigger: GACCTCTGCACTATGCCTCCAGGATGAACCACCATA...ACAATGATGAATCAGAGTCAGATTTGGCAGAATACAATATGCATAACTCATGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR GCA 90 bp TACCTTCATTATTTGGGATTTAAAGTGTGTCCTAAGGGCATGTCTGTATTTAAGGAAGGAAAGTGTCAGTaGAGGCAAGTTGTAGCAAGG +
Preference number: 4 (lower is better)
Translates to: YLHYLGFKVCPKGMSVFKEGKCQ*RQVVAR
Trigger: CCTTGCTACAACTTGCCTGCACTGACACTTTCCTTC...CTTAAATACAGACATGCCCTTAGGACACACTTTAAATCCCAAATAATGAAGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR GCA 90 bp CTGCCACTTAATTGGACATTACTTTCAAAGATGGATGCTTCCTTCTACAAATTAGGCCTTTTTCCTCCCTaGAGTGCTATGTGTTCTCAA +
Preference number: 4 (lower is better)
Translates to: LPLNWTLLSKMDASFYKLGLFPP*SAMCSQ
Trigger: TTGAGAACACATAGCACTGCAGGGAGGAAAAAGGCC...TAATTTGTAGAAGGAAGCATCCATCTTTGAAAGTAATGTCCAATTAAGTGGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR CCA 90 bp TACCTTCATTATTTGGGATTTAAAGTGTGTCCTAAGGGCATGTCTGTATTTAAGAGAAGACAGCACATATaGTGGTTCATCCTGGAGGCA +
Preference number: 4 (lower is better)
Translates to: YLHYLGFKVCPKGMSVFKRRQHI*WFILEA
Trigger: TGCCTCCAGGATGAACCACCATATGTGCTGTCTTCT...CTTAAATACAGACATGCCCTTAGGACACACTTTAAATCCCAAATAATGAAGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR TCA 90 bp TTTTCCTGCCACTTAATTGGACATTACTTTCAAAGATGGATGCTTCCTTCTACAATGTCACAAAAGAAGTaGTCCAAGATATTGGGGCCA +
Preference number: 4 (lower is better)
Translates to: FSCHLIGHYFQRWMLPSTMSQKK*SKILGP
Trigger: TGGCCCCAATATCTTGGATCACTTCTTTTGTGACAT...TGTAGAAGGAAGCATCCATCTTTGAAAGTAATGTCCAATTAAGTGGCAGGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR CCA 90 bp CTGCCACTTAATTGGACATTACTTTCAAAGATGGATGCTTCCTTCTACAAATTACTATTGCTTTATCCATaGGAAAGGTTGCCACTGGTC +
Preference number: 4 (lower is better)
Translates to: LPLNWTLLSKMDASFYKLLLLYP*ERLPLV
Trigger: GACCAGTGGCAACCTTTCCCATGGATAAAGCAATAG...TAATTTGTAGAAGGAAGCATCCATCTTTGAAAGTAATGTCCAATTAAGTGGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR CCA 90 bp TTTTCCTGCCACTTAATTGGACATTACTTTCAAAGATGGATGCTTCCTTCTACACAAGAAAAAGTACATTaGGGAGTTCAAAGACTGGCT +
Preference number: 4 (lower is better)
Translates to: FSCHLIGHYFQRWMLPSTQEKVH*GVQRLA
Trigger: AGCCAGTCTTTGAACTCCCCAATGTACTTTTTCTTG...TGTAGAAGGAAGCATCCATCTTTGAAAGTAATGTCCAATTAAGTGGCAGGAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR TCA 90 bp TACCTTCATTATTTGGGATTTAAAGTGTGTCCTAAGGGCATGTCTGTATTTAAGGATGGTTTTTGTTTCTaGGAGCAAATCTACCAGCAT +
Preference number: 4 (lower is better)
Translates to: YLHYLGFKVCPKGMSVFKDGFCF*EQIYQH
Trigger: ATGCTGGTAGATTTGCTCTCAGAAACAAAAACCATC...CTTAAATACAGACATGCCCTTAGGACACACTTTAAATCCCAAATAATGAAGGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR TCA 90 bp TACCTTCATTATTTGGGATTTAAAGTGTGTCCTAAGGGCATGTCTGTATTTAAGGCAATATGCAGCCATTaGATGAGATGGTTTTTGTTT +
Preference number: 4 (lower is better)
Translates to: YLHYLGFKVCPKGMSVFKAICSH*MRWFLF
Trigger: AAACAAAAACCATCTCATTCAATGGCTGCATATTGC...CTTAAATACAGACATGCCCTTAGGACACACTTTAAATCCCAAATAATGAAGGTA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR TCA 90 bp TACCTTCATTATTTGGGATTTAAAGTGTGTCCTAAGGGCATGTCTGTATTTAAGTCAAGGAGTAAAGAATaGCTGCATAGGACATCAATA +
Preference number: 4 (lower is better)
Translates to: YLHYLGFKVCPKGMSVFKSRSKE*LHRTSI
Trigger: TATTGATGTCCTATGCAGTCATTCTTTACTCCTTGA...CTTAAATACAGACATGCCCTTAGGACACACTTTAAATCCCAAATAATGAAGGTA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR GCA 90 bp TACCTTCATTATTTGGGATTTAAAGTGTGTCCTAAGGGCATGTCTGTATTTAAGATAAAACACGGCTATTaGTTTATCCATGGGAAAGGT +
Preference number: 4 (lower is better)
Translates to: YLHYLGFKVCPKGMSVFKIKHGY*FIHGKG
Trigger: ACCTTTCCCATGGATAAAGCAATAGCCGTGTTTTAT...CTTAAATACAGACATGCCCTTAGGACACACTTTAAATCCCAAATAATGAAGGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS GCA 90 bp CACCACCATTGCAAGCAACCAGGAGTCCAAGAAGGAAAGTGTCAGTaGAGGCAAGTTGTAGCAAGGGGAAGATGTCACAAAAGAAGTGAT +
Preference number: 5 (lower is better)
Translates to: HHHCKQPGVQEGKCQ*RQVVARGRCHKRSD
Trigger: ATCACTTCTTTTGTGACATCTTCCCCTTGCTACAACTTGCCTGCACTGACACTTTCCTTCTTGGACTCCTGGTTGCTTGCAATGGTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090701.5
ENSMUST00000217131.2
CDS-3UTR CAA 90 bp TACCTTCATTATTTGGGATTTAAAGTGTGTCCTAAGGGCATGTCTGTATTTAAGGGGATTACACCACCATaGCAAGCAACCAGGAGTCCA +
Preference number: 5 (lower is better)
Translates to: YLHYLGFKVCPKGMSVFKGITPP*QATRSP
Trigger: TGGACTCCTGGTTGCTTGCAATGGTGGTGTAATCCC...CTTAAATACAGACATGCCCTTAGGACACACTTTAAATCCCAAATAATGAAGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR CAA 90 bp TACCTTCATTATTTGGGATTTAAAGTGTGTCCTAAGGGCATGTCTGTATTTAAGTCAAGAAAAAGTACATaGGGGAGTTCAAAGACTGGC +
Preference number: 5 (lower is better)
Translates to: YLHYLGFKVCPKGMSVFKSRKST*GSSKTG
Trigger: GCCAGTCTTTGAACTCCCCAATGTACTTTTTCTTGA...CTTAAATACAGACATGCCCTTAGGACACACTTTAAATCCCAAATAATGAAGGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS-3UTR CAA 90 bp TTTTCCTGCCACTTAATTGGACATTACTTTCAAAGATGGATGCTTCCTTCTACATGCAATATGCAGCCATaGAATGAGATGGTTTTTGTT +
Preference number: 5 (lower is better)
Translates to: FSCHLIGHYFQRWMLPSTCNMQP*NEMVFV
Trigger: AACAAAAACCATCTCATTCAATGGCTGCATATTGCA...TGTAGAAGGAAGCATCCATCTTTGAAAGTAATGTCCAATTAAGTGGCAGGAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217131.2
CDS CAA 72 bp AGCATCGTGAAGGTGATCACAGGGATTACACCACCATaGCAAGCAACCAGGAGTCCAAGAAGGAAAGTGTCA +
Preference number: 6 (lower is better)
Translates to: SIVKVITGITPP*QATRSPRRKVS
Trigger: TGACACTTTCCTTCTTGGACTCCTGGTTGCTTGCAATGGTGGTGTAATCCCTGTGATCACCTTCACGATGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090701.5
ENSMUST00000217131.2
CDS TCA 72 bp GGGCCACAGGAGGGAATCCAGAGAGTAACAAGTATCTaGCCAAAGGAATGTAGAAAACCCACTATCCAACAT +
Preference number: 6 (lower is better)
Translates to: GPQEGIQRVTSI*PKECRKPTIQH
Trigger: ATGTTGGATAGTGGGTTTTCTACATTCCTTTGGTCAGATACTTGTTACTCTCTGGATTCCCTCCTGTGGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090701.5
ENSMUST00000217131.2