Pregenerated sensors for OLFR1179 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075127Ensembl transcript IDs: ENSMUST00000099825.2, ENSMUST00000213157.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATCTCATTGTGGCCACAGAAGGGGAGGCTGATAGCAAGGAGGCTCTaGAGGAAGGAATGTATAAAAGCACCAGCACAGCAAGCAGTGACC | + |
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Preference number: 5 (lower is better) Translates to: ISLWPQKGRLIARRL*RKECIKAPAQQAVT Trigger: GGTCACTGCTTGCTGTGCTGGTGCTTTTATACATTCCTTCCTCCAGAGCCTCCTTGCTATCAGCCTCCCCTTCTGTGGCCACAATGAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000099825.2 ENSMUST00000213157.2 |
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| CDS TCA 90 bp | TGCAGCTTGTATAAGAAATTTTGTTCCTTTCTACGAGAAGGTCAGTaGGAAACTTGGGTGTCACTGTGGAGGTATAGCACAGGTCTGACA | + |
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Preference number: 5 (lower is better) Translates to: CSLYKKFCSFLREGQ*ETWVSLWRYSTGLT Trigger: TGTCAGACCTGTGCTATACCTCCACAGTGACACCCAAGTTTCTCACTGACCTTCTCGTAGAAAGGAACAAAATTTCTTATACAAGCTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099825.2 ENSMUST00000213157.2 |
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| CDS CAA 72 bp | AAGACTACGAAGGTGACCAGTCCCATCATGCCTGAATaGGCAACCACCAGAAGTCCGACTCTGTGCGTATTG | + |
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Preference number: 6 (lower is better) Translates to: KTTKVTSPIMPE*ATTRSPTLCVL Trigger: CAATACGCACAGAGTCGGACTTCTGGTGGTTGCCAATTCAGGCATGATGGGACTGGTCACCTTCGTAGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099825.2 ENSMUST00000213157.2 |
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| CDS GCA 72 bp | TGGCAACCACCAGAAGTCCGACTCTGTGCGTATTGGTaGAGGAAAGAGTTAGCAAAGGATAAATATCACAGA | + |
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Preference number: 6 (lower is better) Translates to: WQPPEVRLCAYW*RKELAKDKYHR Trigger: TCTGTGATATTTATCCTTTGCTAACTCTTTCCTGCACCAATACGCACAGAGTCGGACTTCTGGTGGTTGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099825.2 ENSMUST00000213157.2 |
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