Pregenerated sensors for OLFR1161 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045150Ensembl transcript IDs: ENSMUST00000054845.6, ENSMUST00000214438.2, ENSMUST00000217006.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGGCATCAATGGGAGGAAAGGCCTTGAGTCTAGTGAAGGCTGGATaGCCCAGTGTAGGGGAATGCCAGGGAAGGGAGTGGGTAGATGGG | + |
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Preference number: 1 (lower is better) Translates to: WASMGGKALSLVKAG*PSVGECQGREWVDG Trigger: CCCATCTACCCACTCCCTTCCCTGGCATTCCCCTACACTGGGGCATCCAGCCTTCACTAGACTCAAGGCCTTTCCTCCCATTGATGCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR CCA 90 bp | ACTTTATGCGTGTTCCTTCTGAAATTTCCGGGAGGCACAATCTCCTaGACACTTCTTTATCCTCTGTCTCTGAGAATTTTTCTGCCCCCT | + |
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Preference number: 1 (lower is better) Translates to: TLCVFLLKFPGGTIS*TLLYPLSLRIFLPP Trigger: AGGGGGCAGAAAAATTCTCAGAGACAGAGGATAAAGAAGTGTCCAGGAGATTGTGCCTCCCGGAAATTTCAGAAGGAACACGCATAAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR GCA 90 bp | AAAACTTCTTTTGCCTCAAATACATCTCTAATAACTCAGTCCTCATaGTTACACAGTCATGTTGGTGAGACTTTATGCGTGTTCCTTCTG | + |
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Preference number: 1 (lower is better) Translates to: KTSFASNTSLITQSS*LHSHVGETLCVFLL Trigger: CAGAAGGAACACGCATAAAGTCTCACCAACATGACTGTGTAAGCATGAGGACTGAGTTATTAGAGATGTATTTGAGGCAAAAGAAGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR CCA 90 bp | TACTGGGTGCTTGGAAGAATGCCTGCAGGAGATAATTCAACCAAGTaGTTCAAAGAGGTAAAATTTGGTTTTATATCATGCATGAGGAAT | + |
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Preference number: 1 (lower is better) Translates to: YWVLGRMPAGDNSTK*FKEVKFGFISCMRN Trigger: ATTCCTCATGCATGATATAAAACCAAATTTTACCTCTTTGAACCACTTGGTTGAATTATCTCCTGCAGGCATTCTTCCAAGCACCCAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR TCA 90 bp | AATGATAAAATCATCTCCTACAAGTTTCTATTCAGGTCATTTACGTaGTGCATTGGAGAATACATGCACACCACAGAGGAAGAAAATCAT | + |
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Preference number: 1 (lower is better) Translates to: NDKIISYKFLFRSFT*CIGEYMHTTEEENH Trigger: ATGATTTTCTTCCTCTGTGGTGTGCATGTATTCTCCAATGCATCACGTAAATGACCTGAATAGAAACTTGTAGGAGATGATTTTATCATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR TCA 90 bp | GAGTCTAGTGAAGGCTGGATGCCCCAGTGTAGGGGAATGCCAGGGAAGGGAGTGGAGAGACTGCTTTGTTaGCATACACATCGGGACTCT | + |
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Preference number: 2 (lower is better) Translates to: ESSEGWMPQCRGMPGKGVERLLC*HTHRDS Trigger: AGAGTCCCGATGTGTATGTCAACAAAGCAGTCTCTC...CACTCCCTTCCCTGGCATTCCCCTACACTGGGGCATCCAGCCTTCACTAGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR CCA 90 bp | GGAATGCCAGGGAAGGGAGTGGGTAGATGGGTGAGTAAGCACCCTCATAGAAGCGGGATAGGGTGTTTCTaGAGAGGAAACTGGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: GMPGKGVGRWVSKHPHRSGIGCF*RGNWER Trigger: CCTTTCCCAGTTTCCTCTCCAGAAACACCCTATCCC...GCTTCTATGAGGGTGCTTACTCACCCATCTACCCACTCCCTTCCCTGGCATTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR GCA 90 bp | GAGTCTAGTGAAGGCTGGATGCCCCAGTGTAGGGGAATGCCAGGGAAGGGAGTGATGGCTTTCCACTGTTaGCAAGAGTTCTATTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: ESSEGWMPQCRGMPGKGVMAFHC*QEFYFL Trigger: AAGAAAATAGAACTCTTGGCAACAGTGGAAAGCCAT...CACTCCCTTCCCTGGCATTCCCCTACACTGGGGCATCCAGCCTTCACTAGACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR TCA 90 bp | CACATTCCTACTGGGTGCTTGGAAGAATGCCTGCAGGAGATAATTCAACCAAGTGAGTGGGTAGATGGGTaGGTAAGCACCCTCATAGAA | + |
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Preference number: 2 (lower is better) Translates to: HIPTGCLEECLQEIIQPSEWVDG*VSTLIE Trigger: TTCTATGAGGGTGCTTACTCACCCATCTACCCACTC...ACTTGGTTGAATTATCTCCTGCAGGCATTCTTCCAAGCACCCAGTAGGAATGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR TCA 90 bp | CACATTCCTACTGGGTGCTTGGAAGAATGCCTGCAGGAGATAATTCAACCAAGTTATGCGTGTTCCTTCTaGAATTTCCGGGAGGCACAA | + |
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Preference number: 2 (lower is better) Translates to: HIPTGCLEECLQEIIQPSYACSF*NFREAQ Trigger: TTGTGCCTCCCGGAAATTTCAGAAGGAACACGCATA...ACTTGGTTGAATTATCTCCTGCAGGCATTCTTCCAAGCACCCAGTAGGAATGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCTGGTTTCTGGTAATGGCTTTCCACTGTTGCCAAGAGTTCTATTTTCTTTTTCGTCCTGTTTTGATTaGCCATCTAGTCTTTGGGGT | + |
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Preference number: 2 (lower is better) Translates to: LLVSGNGFPLLPRVLFSFSSCFD*PSSLWG Trigger: ACCCCAAAGACTAGATGGGCAATCAAAACAGGACGA...AAAAGAAAATAGAACTCTTGGCAACAGTGGAAAGCCATTACCAGAAACCAGAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR CAA 90 bp | AAATCATCTCCTACAAGTTTCTATTCAGGTCATTTACGTGATGCATaGGAGAATACATGCACACCACAGAGGAAGAAAATCATGAAAGTT | + |
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Preference number: 2 (lower is better) Translates to: KSSPTSFYSGHLRDA*ENTCTPQRKKIMKV Trigger: AACTTTCATGATTTTCTTCCTCTGTGGTGTGCATGTATTCTCCAATGCATCACGTAAATGACCTGAATAGAAACTTGTAGGAGATGATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR CCA 72 bp | CAGTGTAGGGGAATGCCAGGGAAGGGAGTGGGTAGATaGGTGAGTAAGCACCCTCATAGAAGCCGGGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: QCRGMPGKGVGR*VSKHPHRSRGW Trigger: CCACCCCCGGCTTCTATGAGGGTGCTTACTCACCCATCTACCCACTCCCTTCCCTGGCATTCCCCTACACTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR CAA 90 bp | GAGTCTAGTGAAGGCTGGATGCCCCAGTGTAGGGGAATGCCAGGGAAGGGAGTGAATGGCTTTCCACTGTaGCCAAGAGTTCTATTTTCT | + |
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Preference number: 3 (lower is better) Translates to: ESSEGWMPQCRGMPGKGVNGFPL*PRVLFS Trigger: AGAAAATAGAACTCTTGGCAACAGTGGAAAGCCATT...CACTCCCTTCCCTGGCATTCCCCTACACTGGGGCATCCAGCCTTCACTAGACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR CAA 90 bp | GGAATGCCAGGGAAGGGAGTGGGTAGATGGGTGAGTAAGCACCCTCATAGAAGCTCTTCTCACCCAACTTaGAAATATGTTTTCCCCTAT | + |
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Preference number: 3 (lower is better) Translates to: GMPGKGVGRWVSKHPHRSSSHPT*KYVFPY Trigger: ATAGGGGAAAACATATTTCAAAGTTGGGTGAGAAGA...GCTTCTATGAGGGTGCTTACTCACCCATCTACCCACTCCCTTCCCTGGCATTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR TCA 72 bp | ACAGTCATGTTGGTGAGACTTTATGCGTGTTCCTTCTaGAATTTCCGGGAGGCACAATCTCCTGGACACTTC | + |
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Preference number: 3 (lower is better) Translates to: TVMLVRLYACSF*NFREAQSPGHF Trigger: GAAGTGTCCAGGAGATTGTGCCTCCCGGAAATTTCAGAAGGAACACGCATAAAGTCTCACCAACATGACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR GCA 72 bp | TTTTCCATCATGCTGGGATTTGGTCTATCTGGAACTTaGCCAGGTCTTGTGGAAGCTATCACAGTCACTGTA | + |
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Preference number: 3 (lower is better) Translates to: FSIMLGFGLSGT*PGLVEAITVTV Trigger: TACAGTGACTGTGATAGCTTCCACAAGACCTGGGCAAGTTCCAGATAGACCAAATCCCAGCATGATGGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR CCA 72 bp | GTGTTCCTTCTGAAATTTCCGGGAGGCACAATCTCCTaGACACTTCTTTATCCTCTGTCTCTGAGAATTTTT | + |
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Preference number: 3 (lower is better) Translates to: VFLLKFPGGTIS*TLLYPLSLRIF Trigger: AAAAATTCTCAGAGACAGAGGATAAAGAAGTGTCCAGGAGATTGTGCCTCCCGGAAATTTCAGAAGGAACAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR TCA 72 bp | ATCATCTCCTACAAGTTTCTATTCAGGTCATTTACGTaGTGCATTGGAGAATACATGCACACCACAGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: IISYKFLFRSFT*CIGEYMHTTEE Trigger: TTCCTCTGTGGTGTGCATGTATTCTCCAATGCATCACGTAAATGACCTGAATAGAAACTTGTAGGAGATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR GCA 72 bp | AAAATTATACACATTCCTACTGGGTGCTTGGAAGAATaGCTGCAGGAGATAATTCAACCAAGTGGTTCAAAG | + |
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Preference number: 3 (lower is better) Translates to: KIIHIPTGCLEE*LQEIIQPSGSK Trigger: CTTTGAACCACTTGGTTGAATTATCTCCTGCAGGCATTCTTCCAAGCACCCAGTAGGAATGTGTATAATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR CCA 72 bp | CTACAAGTTTCTATTCAGGTCATTTACGTGATGCATTaGAGAATACATGCACACCACAGAGGAAGAAAATCA | + |
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Preference number: 3 (lower is better) Translates to: LQVSIQVIYVMH*RIHAHHRGRKS Trigger: TGATTTTCTTCCTCTGTGGTGTGCATGTATTCTCCAATGCATCACGTAAATGACCTGAATAGAAACTTGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR-3UTR CAA 90 bp | CTTCTGGTTTCTGGTAATGGCTTTCCACTGTTGCCAAGAGTTCTATTTTCTTTTTCTTCTCACCCAACTTaGAAATATGTTTTCCCCTAT | + |
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Preference number: 3 (lower is better) Translates to: LLVSGNGFPLLPRVLFSFSSHPT*KYVFPY Trigger: ATAGGGGAAAACATATTTCAAAGTTGGGTGAGAAGA...AAAAGAAAATAGAACTCTTGGCAACAGTGGAAAGCCATTACCAGAAACCAGAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR TCA 90 bp | GAGTCTAGTGAAGGCTGGATGCCCCAGTGTAGGGGAATGCCAGGGAAGGGAGTGTTGTCAAGGAACATATaGGTCCCCATGCATATGATC | + |
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Preference number: 4 (lower is better) Translates to: ESSEGWMPQCRGMPGKGVLSRNI*VPMHMI Trigger: GATCATATGCATGGGGACTCATATGTTCCTTGACAA...CACTCCCTTCCCTGGCATTCCCCTACACTGGGGCATCCAGCCTTCACTAGACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR CCA 90 bp | GAGTCTAGTGAAGGCTGGATGCCCCAGTGTAGGGGAATGCCAGGGAAGGGAGTGAGAGTTTCTGAGACATaGCTACTGTGTAAAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: ESSEGWMPQCRGMPGKGVRVSET*LLCKAV Trigger: CACTGCTTTACACAGTAGCCATGTCTCAGAAACTCT...CACTCCCTTCCCTGGCATTCCCCTACACTGGGGCATCCAGCCTTCACTAGACTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR TCA 90 bp | CACATTCCTACTGGGTGCTTGGAAGAATGCCTGCAGGAGATAATTCAACCAAGTGAGCTGGGAGTTCTTTaGGTTGGGTACAGAGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: HIPTGCLEECLQEIIQPSELGVL*VGYRVE Trigger: CTCTACTCTGTACCCAACTCAAAGAACTCCCAGCTC...ACTTGGTTGAATTATCTCCTGCAGGCATTCTTCCAAGCACCCAGTAGGAATGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR GCA 90 bp | GGAATGCCAGGGAAGGGAGTGGGTAGATGGGTGAGTAAGCACCCTCATAGAAGCAAGTACATGGGAGTGTaGAGTTTGGGATTAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: GMPGKGVGRWVSKHPHRSKYMGV*SLGLIL Trigger: AAGAATTAATCCCAAACTGCACACTCCCATGTACTT...GCTTCTATGAGGGTGCTTACTCACCCATCTACCCACTCCCTTCCCTGGCATTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR CCA 90 bp | CTATCTGGAACTTGCCCAGGTCTTGTGGAAGCTATCACAGTCACTGTAGGTTCAGGGAGTTCTTTGAGTTaGGTACAGAGTAGAGAAACA | + |
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Preference number: 4 (lower is better) Translates to: LSGTCPGLVEAITVTVGSGSSLS*VQSRET Trigger: TGTTTCTCTACTCTGTACCCAACTCAAAGAACTCCC...TGAACCTACAGTGACTGTGATAGCTTCCACAAGACCTGGGCAAGTTCCAGATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR CAA 72 bp | TTTTTCCATCATGCTGGGATTTGGTCTATCTGGAACTaGCCCAGGTCTTGTGGAAGCTATCACAGTCACTGT | + |
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Preference number: 4 (lower is better) Translates to: FFHHAGIWSIWN*PRSCGSYHSHC Trigger: ACAGTGACTGTGATAGCTTCCACAAGACCTGGGCAAGTTCCAGATAGACCAAATCCCAGCATGATGGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR TCA 90 bp | CACATTCCTACTGGGTGCTTGGAAGAATGCCTGCAGGAGATAATTCAACCAAGTTTGTCAAGGAACATATaGGTCCCCATGCATATGATC | + |
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Preference number: 4 (lower is better) Translates to: HIPTGCLEECLQEIIQPSLSRNI*VPMHMI Trigger: GATCATATGCATGGGGACTCATATGTTCCTTGACAA...ACTTGGTTGAATTATCTCCTGCAGGCATTCTTCCAAGCACCCAGTAGGAATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR TCA 90 bp | TTAGAAGTAAGTCAACCCCATAGGAAGAACAACAAAATAAACCAACCAGACTCCGAGCTGGGAGTTCTTTaGGTTGGGTACAGAGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: LEVSQPHRKNNKINQPDSELGVL*VGYRVE Trigger: CTCTACTCTGTACCCAACTCAAAGAACTCCCAGCTC...GGAGTCTGGTTGGTTTATTTTGTTGTTCTTCCTATGGGGTTGACTTACTTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR CCA 90 bp | CTTCTGGTTTCTGGTAATGGCTTTCCACTGTTGCCAAGAGTTCTATTTTCTTTTAGAGTTTCTGAGACATaGCTACTGTGTAAAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: LLVSGNGFPLLPRVLFSFRVSET*LLCKAV Trigger: CACTGCTTTACACAGTAGCCATGTCTCAGAAACTCT...AAAAGAAAATAGAACTCTTGGCAACAGTGGAAAGCCATTACCAGAAACCAGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR CCA 90 bp | CTTCTGGTTTCTGGTAATGGCTTTCCACTGTTGCCAAGAGTTCTATTTTCTTTTGGGAGTTCTTTGAGTTaGGTACAGAGTAGAGAAACA | + |
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Preference number: 4 (lower is better) Translates to: LLVSGNGFPLLPRVLFSFGSSLS*VQSRET Trigger: TGTTTCTCTACTCTGTACCCAACTCAAAGAACTCCC...AAAAGAAAATAGAACTCTTGGCAACAGTGGAAAGCCATTACCAGAAACCAGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR CCA 90 bp | CTTCTGGTTTCTGGTAATGGCTTTCCACTGTTGCCAAGAGTTCTATTTTCTTTTACTTTGAATGTGAGCTaGGAGTTCTTTGAGTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LLVSGNGFPLLPRVLFSFTLNVS*EFFELG Trigger: ACCCAACTCAAAGAACTCCCAGCTCACATTCAAAGT...AAAAGAAAATAGAACTCTTGGCAACAGTGGAAAGCCATTACCAGAAACCAGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| 3UTR CAA 72 bp | TCATCACTTAAAATTATACACATTCCTACTGGGTGCTaGGAAGAATGCCTGCAGGAGATAATTCAACCAAGT | + |
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Preference number: 4 (lower is better) Translates to: SSLKIIHIPTGC*EECLQEIIQPS Trigger: ACTTGGTTGAATTATCTCCTGCAGGCATTCTTCCAAGCACCCAGTAGGAATGTGTATAATTTTAAGTGATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS-3UTR GCA 90 bp | TTAGAAGTAAGTCAACCCCATAGGAAGAACAACAAAATAAACCAACCAGACTCCAAGTACATGGGAGTGTaGAGTTTGGGATTAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LEVSQPHRKNNKINQPDSKYMGV*SLGLIL Trigger: AAGAATTAATCCCAAACTGCACACTCCCATGTACTT...GGAGTCTGGTTGGTTTATTTTGTTGTTCTTCCTATGGGGTTGACTTACTTCTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000214438.2 ENSMUST00000217006.2 |
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| CDS TCA 72 bp | TCTCTATTTCTGGGTAATCTGAGAAGCTCAATAGGATaGACATGGCCCCACTGTTATTTCCATATGTCAGTA | + |
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Preference number: 6 (lower is better) Translates to: SLFLGNLRSSIG*TWPHCYFHMSV Trigger: TACTGACATATGGAAATAACAGTGGGGCCATGTTCATCCTATTGAGCTTCTCAGATTACCCAGAAATAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054845.6 ENSMUST00000214438.2 ENSMUST00000217006.2 |
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