Pregenerated sensors for OLFR116 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061336Ensembl transcript IDs: ENSMUST00000072265.3, ENSMUST00000216128.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTTTTAATCCTTTGTGTATGCCCAAGAGTTGTATAGTTGGATCCTaGGACATATCTATTCCAAACTTCCTGAGGAACCCCCACATTGAT | + |
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Preference number: 1 (lower is better) Translates to: IFNPLCMPKSCIVGS*DISIPNFLRNPHID Trigger: ATCAATGTGGGGGTTCCTCAGGAAGTTTGGAATAGATATGTCTCAGGATCCAACTATACAACTCTTGGGCATACACAAAGGATTAAAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 90 bp | CAGTGGATGGATGTTCCCTTTACTCCCAAAGCACGAGCTGTCAGGTaGAGACCCTGTACATATTTGTGTTTCAATATATCCTCATTAGGA | + |
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Preference number: 2 (lower is better) Translates to: QWMDVPFTPKARAVR*RPCTYLCFNISSLG Trigger: TCCTAATGAGGATATATTGAAACACAAATATGTACAGGGTCTCAACCTGACAGCTCGTGCTTTGGGAGTAAAGGGAACATCCATCCACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR GCA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTAATATTCCTGTCTCAGTaGCTGCCATATACACCTATA | + |
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Preference number: 2 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLIFLSQ*LPYTPI Trigger: TATAGGTGTATATGGCAGGCACTGAGACAGGAATAT...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR TCA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTACTCAGTGATCATATGTaGGTAACAATCTCTGTAGTA | + |
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Preference number: 2 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLLSDHM*VTISVV Trigger: TACTACAGAGATTGTTACTCACATATGATCACTGAG...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR GCA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTACAGGAAGTGAGATTGTaGAAAATTTATCTCTCACAA | + |
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Preference number: 2 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLQEVRL*KIYLSQ Trigger: TTGTGAGAGATAAATTTTGCACAATCTCACTTCCTG...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR GCA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTAAAAACACATCAGTTCTaGATGCTTGATACTTGTAGA | + |
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Preference number: 2 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLKTHQF*MLDTCR Trigger: TCTACAAGTATCAAGCATGCAGAACTGATGTGTTTT...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 90 bp | TCATTACTCAATGTTTCAGGAAAAGTACAGTACACACTGATTCTCTaGTGTTCAGAGTGTCATGAAAGAGCCATGCCCAAGTGTTTGTTC | + |
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Preference number: 2 (lower is better) Translates to: SLLNVSGKVQYTLIL*CSECHERAMPKCLF Trigger: GAACAAACACTTGGGCATGGCTCTTTCATGACACTCTGAACACAAGAGAATCAGTGTGTACTGTACTTTTCCTGAAACATTGAGTAATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 90 bp | ATTCTCTTGTGTTCAGAGTGTCATGAAAGAGCCATGCCCAAGTGTTaGTTCAAGGCAGTGTTTGTGTATGTTCATGTTCTCTTAGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: ILLCSECHERAMPKC*FKAVFVYVHVLLEK Trigger: TTTTTCTAAGAGAACATGAACATACACAAACACTGCCTTGAACAAACACTTGGGCATGGCTCTTTCATGACACTCTGAACACAAGAGAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR TCA 90 bp | TGTAGTAGGATTTTTAATCCTTTGTGTATGCCCAAGAGTTGTATAGTTGGATCCTTCCTTGTGCAAGCATaGTCCTTTTCTCCTTGTTCA | + |
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Preference number: 2 (lower is better) Translates to: CSRIFNPLCMPKSCIVGSFLVQA*SFSPCS Trigger: TGAACAAGGAGAAAAGGATCATGCTTGCACAAGGAA...GGATCCAACTATACAACTCTTGGGCATACACAAAGGATTAAAAATCCTACTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 90 bp | ATTTACTGCTCCAAACTTTCCCCTAGCCTGACAAGGAAGAGGCATTaGGATAAAAGGGAAATGTCTCTAACAATTAATCCATTACTTCTT | + |
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Preference number: 2 (lower is better) Translates to: IYCSKLSPSLTRKRH*DKREMSLTINPLLL Trigger: AAGAAGTAATGGATTAATTGTTAGAGACATTTCCCTTTTATCCAAATGCCTCTTCCTTGTCAGGCTAGGGGAAAGTTTGGAGCAGTAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR TCA 90 bp | GATAGAAAGGTTTGTGTTTGGGTTACCATTTGCTTTTATTCTCTGGAAACTCTTGAGTTCTTTCTGCATTaGTGCTTGGTCTTTTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: DRKVCVWVTICFYSLETLEFFLH*CLVFCS Trigger: AGAGCAAAAGACCAAGCATCAATGCAGAAAGAACTC...AAGAGTTTCCAGAGAATAAAAGCAAATGGTAACCCAAACACAAACCTTTCTATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR CCA 90 bp | TTACTCAATGTTTCAGGAAAAGTACAGTACACACTGATTCTCTTGTGTTCAGAGCTATGCAATAAAGATTaGAGACCATTTTTCATCCAG | + |
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Preference number: 2 (lower is better) Translates to: LLNVSGKVQYTLILLCSELCNKD*RPFFIQ Trigger: CTGGATGAAAAATGGTCTCCAATCTTTATTGCATAG...CTCTGAACACAAGAGAATCAGTGTGTACTGTACTTTTCCTGAAACATTGAGTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CCA 72 bp | AGTCTCAGGTTCTTGGTCATCCAACAGTGTCAGGGATaGATTCCATTTAGTGGGATGGTTGGTTACTCCCAC | + |
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Preference number: 3 (lower is better) Translates to: SLRFLVIQQCQG*IPFSGMVGYSH Trigger: GTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTGTTGGATGACCAAGAACCTGAGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTAGCCATGCCCAAGTGTTaGTTCAAGGCAGTGTTTGTG | + |
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Preference number: 3 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLAMPKC*FKAVFV Trigger: CACAAACACTGCCTTGAACAAACACTTGGGCATGGC...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CCA 72 bp | TCCAACAGTGTCAGGGATGGATTCCATTTAGTGGGATaGTTGGTTACTCCCACAACTTATGTGCCACCATTG | + |
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Preference number: 3 (lower is better) Translates to: SNSVRDGFHLVG*LVTPTTYVPPL Trigger: CAATGGTGGCACATAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTGTTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTATTTATCAGTCCCTTCTaGCATTTCCTCCTTCACCCT | + |
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Preference number: 3 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLFISPF*HFLLHP Trigger: AGGGTGAAGGAGGAAATGCAAGAAGGGACTGATAAA...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR TCA 72 bp | ACAGTACACACTGATTCTCTTGTGTTCAGAGTGTCATaGAAGAGCCATGCCCAAGTGTTTGTTCAAGGCAGT | + |
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Preference number: 3 (lower is better) Translates to: TVHTDSLVFRVS*KSHAQVFVQGS Trigger: ACTGCCTTGAACAAACACTTGGGCATGGCTCTTTCATGACACTCTGAACACAAGAGAATCAGTGTGTACTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR CAA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTATGTTTGGGTTACCATTaGCTTTTATTCTCTGGAAAC | + |
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Preference number: 3 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLCLGYH*LLFSGN Trigger: GTTTCCAGAGAATAAAAGCAAATGGTAACCCAAACA...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR TCA 72 bp | ATGTTCCCTTTACTCCCAAAGCACGAGCTGTCAGGTTaGGACCCTGTACATATTTGTGTTTCAATATATCCT | + |
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Preference number: 3 (lower is better) Translates to: MFPLLPKHELSG*DPVHICVSIYP Trigger: AGGATATATTGAAACACAAATATGTACAGGGTCTCAACCTGACAGCTCGTGCTTTGGGAGTAAAGGGAACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR TCA 72 bp | CATTACTCAATGTTTCAGGAAAAGTACAGTACACACTaGTTCTCTTGTGTTCAGAGTGTCATGAAAGAGCCA | + |
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Preference number: 3 (lower is better) Translates to: HYSMFQEKYSTH*FSCVQSVMKEP Trigger: TGGCTCTTTCATGACACTCTGAACACAAGAGAATCAGTGTGTACTGTACTTTTCCTGAAACATTGAGTAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR CAA 90 bp | TTACTCAATGTTTCAGGAAAAGTACAGTACACACTGATTCTCTTGTGTTCAGAGCCTAAAAATTGTGAATaGGTATGTGGAAAAGGAGCT | + |
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Preference number: 3 (lower is better) Translates to: LLNVSGKVQYTLILLCSEPKNCE*VCGKGA Trigger: AGCTCCTTTTCCACATACCAATTCACAATTTTTAGG...CTCTGAACACAAGAGAATCAGTGTGTACTGTACTTTTCCTGAAACATTGAGTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR-3UTR CAA 90 bp | GATAGAAAGGTTTGTGTTTGGGTTACCATTTGCTTTTATTCTCTGGAAACTCTTTCTTTAAAGCTACATTaGAGTCTGACTCTGTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: DRKVCVWVTICFYSLETLSLKLH*SLTLCL Trigger: GAGACACAGAGTCAGACTCAAATGTAGCTTTAAAGA...AAGAGTTTCCAGAGAATAAAAGCAAATGGTAACCCAAACACAAACCTTTCTATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR GCA 72 bp | TTCCCTTTCTCTCTGTGTTTGATATTCCTGTCTCAGTaGCTGCCATATACACCTATAACTATCTATTATATT | + |
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Preference number: 3 (lower is better) Translates to: FPFSLCLIFLSQ*LPYTPITIYYI Trigger: AATATAATAGATAGTTATAGGTGTATATGGCAGGCACTGAGACAGGAATATCAAACACAGAGAGAAAGGGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR TCA 72 bp | AGTTTCAAATTTCTGACTAGTATGATAGAGCCTCAGTaGTCATATGTGAGTAACAATCTCTGTAGTAGGATT | + |
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Preference number: 3 (lower is better) Translates to: SFKFLTSMIEPQ*SYVSNNLCSRI Trigger: AATCCTACTACAGAGATTGTTACTCACATATGATCACTGAGGCTCTATCATACTAGTCAGAAATTTGAAACT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR TCA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTACATACTGGGGGACTGTaGCAGAGAGGGATGAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLHTGGL*QRGMRG Trigger: ACCTCTCATCCCTCTCTGTCACAGTCCCCCAGTATG...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR CCA 90 bp | GACTCTGTGTCTCCTTTCAACACACTACAGGGTGGAATGCTCCAGGCATACTTTCAGAAAGTAATACATTaGAGACTGGAGCTGTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: DSVSPFNTLQGGMLQAYFQKVIH*RLELWV Trigger: GACCCACAGCTCCAGTCTCCAATGTATTACTTTCTG...AAAGTATGCCTGGAGCATTCCACCCTGTAGTGTGTTGAAAGGAGACACAGAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR TCA 90 bp | GACTCTGTGTCTCCTTTCAACACACTACAGGGTGGAATGCTCCAGGCATACTTTTACATACCGATCGTATaGCATCACTGTGAGAATAGC | + |
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Preference number: 4 (lower is better) Translates to: DSVSPFNTLQGGMLQAYFYIPIV*HHCENS Trigger: GCTATTCTCACAGTGATGTCATACGATCGGTATGTA...AAAGTATGCCTGGAGCATTCCACCCTGTAGTGTGTTGAAAGGAGACACAGAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 72 bp | AACAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTaGGTTACTCCCACAACTTATGTGCCACCATTGTAT | + |
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Preference number: 4 (lower is better) Translates to: NSVRDGFHLVGW*VTPTTYVPPLY Trigger: ATACAATGGTGGCACATAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR GCA 90 bp | GACTCTGTGTCTCCTTTCAACACACTACAGGGTGGAATGCTCCAGGCATACTTTAATAGAGAATATGGATaGTATATACAGGGTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: DSVSPFNTLQGGMLQAYFNREYG*YIQGSW Trigger: CCAGGAACCCTGTATATAGCATCCATATTCTCTATT...AAAGTATGCCTGGAGCATTCCACCCTGTAGTGTGTTGAAAGGAGACACAGAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 72 bp | TGTTCAGAGTGTCATGAAAGAGCCATGCCCAAGTGTTaGTTCAAGGCAGTGTTTGTGTATGTTCATGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: CSECHERAMPKC*FKAVFVYVHVL Trigger: GAGAACATGAACATACACAAACACTGCCTTGAACAAACACTTGGGCATGGCTCTTTCATGACACTCTGAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 72 bp | GATGTTCCCTTTACTCCCAAAGCACGAGCTGTCAGGTaGAGACCCTGTACATATTTGTGTTTCAATATATCC | + |
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Preference number: 4 (lower is better) Translates to: DVPFTPKARAVR*RPCTYLCFNIS Trigger: GGATATATTGAAACACAAATATGTACAGGGTCTCAACCTGACAGCTCGTGCTTTGGGAGTAAAGGGAACATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR CCA 90 bp | TGTAGTAGGATTTTTAATCCTTTGTGTATGCCCAAGAGTTGTATAGTTGGATCCGAACTGTCAACATACTaGGGGACTGTGACAGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: CSRIFNPLCMPKSCIVGSELSTY*GTVTER Trigger: CCTCTCTGTCACAGTCCCCCAGTATGTTGACAGTTC...GGATCCAACTATACAACTCTTGGGCATACACAAAGGATTAAAAATCCTACTACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR TCA 90 bp | TTACTCAATGTTTCAGGAAAAGTACAGTACACACTGATTCTCTTGTGTTCAGAGCAGCAGAGGGCATTCTaGGAACTGTGGAGAATATGT | + |
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Preference number: 4 (lower is better) Translates to: LLNVSGKVQYTLILLCSEQQRAF*ELWRIC Trigger: ACATATTCTCCACAGTTCTCAGAATGCCCTCTGCTG...CTCTGAACACAAGAGAATCAGTGTGTACTGTACTTTTCCTGAAACATTGAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR TCA 90 bp | GATAGAAAGGTTTGTGTTTGGGTTACCATTTGCTTTTATTCTCTGGAAACTCTTTGTCAGAGAATCCCATaGGGAGAAATCCGCTCATTG | + |
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Preference number: 4 (lower is better) Translates to: DRKVCVWVTICFYSLETLCQRIP*GEIRSL Trigger: CAATGAGCGGATTTCTCCTCATGGGATTCTCTGACA...AAGAGTTTCCAGAGAATAAAAGCAAATGGTAACCCAAACACAAACCTTTCTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR CCA 90 bp | GATAGAAAGGTTTGTGTTTGGGTTACCATTTGCTTTTATTCTCTGGAAACTCTTGAGACAACAAAAAGGTaGGGCAGGCAAGTAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: DRKVCVWVTICFYSLETLETTKR*GRQVEK Trigger: CTTCTCTACTTGCCTGCCCCACCTTTTTGTTGTCTC...AAGAGTTTCCAGAGAATAAAAGCAAATGGTAACCCAAACACAAACCTTTCTATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 72 bp | TCCAAACTTTCCCCTAGCCTGACAAGGAAGAGGCATTaGGATAAAAGGGAAATGTCTCTAACAATTAATCCA | + |
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Preference number: 4 (lower is better) Translates to: SKLSPSLTRKRH*DKREMSLTINP Trigger: TGGATTAATTGTTAGAGACATTTCCCTTTTATCCAAATGCCTCTTCCTTGTCAGGCTAGGGGAAAGTTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 72 bp | AAAGCACGAGCTGTCAGGTTGAGACCCTGTACATATTaGTGTTTCAATATATCCTCATTAGGAACAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: KARAVRLRPCTY*CFNISSLGTAT Trigger: TGTTGCTGTTCCTAATGAGGATATATTGAAACACAAATATGTACAGGGTCTCAACCTGACAGCTCGTGCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR CCA 90 bp | TGTAGTAGGATTTTTAATCCTTTGTGTATGCCCAAGAGTTGTATAGTTGGATCCATGAGAGGTCCAGAATaGAAAGGTGCTTCAGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: CSRIFNPLCMPKSCIVGSMRGPE*KGASES Trigger: ACTTTCTGAAGCACCTTTCCATTCTGGACCTCTCAT...GGATCCAACTATACAACTCTTGGGCATACACAAAGGATTAAAAATCCTACTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR CCA 90 bp | TGTAGTAGGATTTTTAATCCTTTGTGTATGCCCAAGAGTTGTATAGTTGGATCCGACCTCATAGTGGAGTaGAAGGCAAATAGCTACATA | + |
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Preference number: 4 (lower is better) Translates to: CSRIFNPLCMPKSCIVGSDLIVE*KANSYI Trigger: TATGTAGCTATTTGCCTTCCACTCCACTATGAGGTC...GGATCCAACTATACAACTCTTGGGCATACACAAAGGATTAAAAATCCTACTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 72 bp | GGAACCCCCACATTGATTTTTGTAGTAGCTGTAAATTaGTACTCCTATAAACAGTGGATGGATGTTCCCTTT | + |
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Preference number: 4 (lower is better) Translates to: GTPTLIFVVAVN*YSYKQWMDVPF Trigger: AAAGGGAACATCCATCCACTGTTTATAGGAGTACAAATTTACAGCTACTACAAAAATCAATGTGGGGGTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR GCA 90 bp | TTACTCAATGTTTCAGGAAAAGTACAGTACACACTGATTCTCTTGTGTTCAGAGTTCCTGGAATTACACTaGTTAGCCATACACTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LLNVSGKVQYTLILLCSEFLELH*LAIHLS Trigger: TGACAAGTGTATGGCTAAGCAGTGTAATTCCAGGAA...CTCTGAACACAAGAGAATCAGTGTGTACTGTACTTTTCCTGAAACATTGAGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| 3UTR CAA 72 bp | GGATGGTTGGTTACTCCCACAACTTATGTGCCACCATaGTATCAATGTATCTTACATATATTTCACCATAGT | + |
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Preference number: 4 (lower is better) Translates to: GWLVTPTTYVPP*YQCILHIFHHS Trigger: ACTATGGTGAAATATATGTAAGATACATTGATACAATGGTGGCACATAAGTTGTGGGAGTAACCAACCATCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR TCA 90 bp | TGTAGTAGGATTTTTAATCCTTTGTGTATGCCCAAGAGTTGTATAGTTGGATCCTCACAGAATAATTGGTaGATTATTTTGGCCCTACAG | + |
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Preference number: 4 (lower is better) Translates to: CSRIFNPLCMPKSCIVGSSQNNW*IILALQ Trigger: CTGTAGGGCCAAAATAATTCACCAATTATTCTGTGA...GGATCCAACTATACAACTCTTGGGCATACACAAAGGATTAAAAATCCTACTACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS GCA 90 bp | GAGCCCAATAGGTATGTCAGCAAGAACAGCAAAGCATACAAGATCTaGAGCTCACGGTTGTCAGAGAATCCCATGAGGAGAAATCCGCTC | + |
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Preference number: 5 (lower is better) Translates to: EPNRYVSKNSKAYKI*SSRLSENPMRRNPL Trigger: GAGCGGATTTCTCCTCATGGGATTCTCTGACAACCGTGAGCTGCAGATCTTGTATGCTTTGCTGTTCTTGCTGACATACCTATTGGGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072265.3 ENSMUST00000216128.2 |
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| CDS-3UTR CAA 90 bp | GACTCTGTGTCTCCTTTCAACACACTACAGGGTGGAATGCTCCAGGCATACTTTTGCTTAGCCATACACTaGTCACTGCCCACGTACACT | + |
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Preference number: 5 (lower is better) Translates to: DSVSPFNTLQGGMLQAYFCLAIH*SLPTYT Trigger: AGTGTACGTGGGCAGTGACAAGTGTATGGCTAAGCA...AAAGTATGCCTGGAGCATTCCACCCTGTAGTGTGTTGAAAGGAGACACAGAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR CAA 90 bp | CAGTGTCAGGGATGGATTCCATTTAGTGGGATGGTTGGTTACTCCCACAACTTATTAGAGCAGGACAGCTaGAGCAACTGGGGAACATCA | + |
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Preference number: 5 (lower is better) Translates to: QCQGWIPFSGMVGYSHNLLEQDS*SNWGTS Trigger: TGATGTTCCCCAGTTGCTCAAGCTGTCCTGCTCTAA...TAAGTTGTGGGAGTAACCAACCATCCCACTAAATGGAATCCATCCCTGACACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS-3UTR CAA 90 bp | TGTAGTAGGATTTTTAATCCTTTGTGTATGCCCAAGAGTTGTATAGTTGGATCCAGAACTCTAAAGCAGTaGGAGAGTCTGAGCTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: CSRIFNPLCMPKSCIVGSRTLKQ*ESLSLC Trigger: ACACAAGCTCAGACTCTCCAACTGCTTTAGAGTTCT...GGATCCAACTATACAACTCTTGGGCATACACAAAGGATTAAAAATCCTACTACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216128.2 |
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| CDS TCA 72 bp | TTCCCGCCAATGAACTGTCAACATACTGGGGGACTGTaGCAGAGAGGGATGAGAGGTCCAGAATGGAAAGGT | + |
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Preference number: 6 (lower is better) Translates to: FPPMNCQHTGGL*QRGMRGPEWKG Trigger: ACCTTTCCATTCTGGACCTCTCATCCCTCTCTGTCACAGTCCCCCAGTATGTTGACAGTTCATTGGCGGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072265.3 ENSMUST00000216128.2 |
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| CDS GCA 72 bp | AGGTATGTCAGCAAGAACAGCAAAGCATACAAGATCTaGAGCTCACGGTTGTCAGAGAATCCCATGAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: RYVSKNSKAYKI*SSRLSENPMRR Trigger: TCTCCTCATGGGATTCTCTGACAACCGTGAGCTGCAGATCTTGTATGCTTTGCTGTTCTTGCTGACATACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072265.3 ENSMUST00000216128.2 |
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| CDS GCA 72 bp | GGAGATGACAATCCCAACGAAGCAGGCAAAGGCCACTaGAGTCATGAAACTAACCATCCCTATTACTACAAG | + |
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Preference number: 6 (lower is better) Translates to: GDDNPNEAGKGH*SHETNHPYYYK Trigger: CTTGTAGTAATAGGGATGGTTAGTTTCATGACTGCAGTGGCCTTTGCCTGCTTCGTTGGGATTGTCATCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072265.3 ENSMUST00000216128.2 |
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| CDS CAA 90 bp | TATGTCAGCAAGAACAGCAAAGCATACAAGATCTGCAGCTCACGGTaGTCAGAGAATCCCATGAGGAGAAATCCGCTCATTGTGGTTATA | + |
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Preference number: 6 (lower is better) Translates to: YVSKNSKAYKICSSR*SENPMRRNPLIVVI Trigger: TATAACCACAATGAGCGGATTTCTCCTCATGGGATTCTCTGACAACCGTGAGCTGCAGATCTTGTATGCTTTGCTGTTCTTGCTGACATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072265.3 ENSMUST00000216128.2 |
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| CDS GCA 72 bp | ATATGGATGCTATATACAGGGTTCCTGGAATTACACTaGTTAGCCATACACTTGTCACTGCCCACGTACACT | + |
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Preference number: 6 (lower is better) Translates to: IWMLYTGFLELH*LAIHLSLPTYT Trigger: AGTGTACGTGGGCAGTGACAAGTGTATGGCTAAGCAGTGTAATTCCAGGAACCCTGTATATAGCATCCATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072265.3 ENSMUST00000216128.2 |
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