Pregenerated sensors for OLFR1141 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075148

Ensembl transcript IDs: ENSMUST00000099846.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TTCCTACAAGGTAAACACCAGCCAGGAATTGGTAGCATACTCTATTaGACATATCTATGGCATATATCACGGGGTGGCTTATGGCTTTGT	+
Preference number: 5 (lower is better) Translates to: FLQGKHQPGIGSILY*TYLWHISRGGLWLC Trigger: ACAAAGCCATAAGCCACCCCGTGATATATGCCATAGATATGTCCAATAGAGTATGCTACCAATTCCTGGCTGGTGTTTACCTTGTAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS TCA 90 bp	AAGAATCGAAAGGCACAAACAACAATGGGATGGTTTTGTACTTGCTaGAAATGTCTATCAACATCTTGGACCCAATTGCAGAGGAGTAGC	+
Preference number: 5 (lower is better) Translates to: KNRKAQTTMGWFCTC*KCLSTSWTQLQRSS Trigger: GCTACTCCTCTGCAATTGGGTCCAAGATGTTGATAGACATTTTCAGCAAGTACAAAACCATCCCATTGTTGTTTGTGCCTTTCGATTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS GCA 72 bp	CTTGCTGAAAATGTCTATCAACATCTTGGACCCAATTaGAGAGGAGTAGCTGAGGTCAGAGAAAAAGAGGTG	+
Preference number: 6 (lower is better) Translates to: LAENVYQHLGPN*RGVAEVREKEV Trigger: CACCTCTTTTTCTCTGACCTCAGCTACTCCTCTGCAATTGGGTCCAAGATGTTGATAGACATTTTCAGCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS CCA 72 bp	GGTAAACACCAGCCAGGAATTGGTAGCATACTCTATTaGACATATCTATGGCATATATCACGGGGTGGCTTA	+
Preference number: 6 (lower is better) Translates to: GKHQPGIGSILY*TYLWHISRGGL Trigger: TAAGCCACCCCGTGATATATGCCATAGATATGTCCAATAGAGTATGCTACCAATTCCTGGCTGGTGTTTACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS GCA 72 bp	GTGGCTTATGGCTTTGTACTGATCAAAGGCCATTACTaGTGGCAACACACACTCAACATCTATAAAGATACA	+
Preference number: 6 (lower is better) Translates to: VAYGFVLIKGHY*WQHTLNIYKDT Trigger: TGTATCTTTATAGATGTTGAGTGTGTGTTGCCAGCAGTAATGGCCTTTGATCAGTACAAAGCCATAAGCCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS CCA 72 bp	GCTTATGGCTTTGTACTGATCAAAGGCCATTACTGCTaGCAACACACACTCAACATCTATAAAGATACAGAC	+
Preference number: 6 (lower is better) Translates to: AYGFVLIKGHYC*QHTLNIYKDTD Trigger: GTCTGTATCTTTATAGATGTTGAGTGTGTGTTGCCAGCAGTAATGGCCTTTGATCAGTACAAAGCCATAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS TCA 72 bp	AAGGCACAAACAACAATGGGATGGTTTTGTACTTGCTaGAAATGTCTATCAACATCTTGGACCCAATTGCAG	+
Preference number: 6 (lower is better) Translates to: KAQTTMGWFCTC*KCLSTSWTQLQ Trigger: CTGCAATTGGGTCCAAGATGTTGATAGACATTTTCAGCAAGTACAAAACCATCCCATTGTTGTTTGTGCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS CAA 72 bp	AAAGAATCGAAAGGCACAAACAACAATGGGATGGTTTaGTACTTGCTGAAAATGTCTATCAACATCTTGGAC	+
Preference number: 6 (lower is better) Translates to: KESKGTNNNGMV*YLLKMSINILD Trigger: GTCCAAGATGTTGATAGACATTTTCAGCAAGTACAAAACCATCCCATTGTTGTTTGTGCCTTTCGATTCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS CAA 90 bp	ATAGCTAAGAACACAGTAAGTATTAGCACTTTCATGTCAGGGTTATaGGTAATTTCCAAGAGAAGGAGTTCAGGTAATGAAGAACAGTTT	+
Preference number: 6 (lower is better) Translates to: IAKNTVSISTFMSGL*VISKRRSSGNEEQF Trigger: AAACTGTTCTTCATTACCTGAACTCCTTCTCTTGGAAATTACCAATAACCCTGACATGAAAGTGCTAATACTTACTGTGTTCTTAGCTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099846.2
CDS CAA 72 bp	AACACAGTAAGTATTAGCACTTTCATGTCAGGGTTATaGGTAATTTCCAAGAGAAGGAGTTCAGGTAATGAA	+
Preference number: 6 (lower is better) Translates to: NTVSISTFMSGL*VISKRRSSGNE Trigger: TTCATTACCTGAACTCCTTCTCTTGGAAATTACCAATAACCCTGACATGAAAGTGCTAATACTTACTGTGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099846.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu