Pregenerated sensors for OLFR1082 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000111689

Ensembl transcript IDs: ENSMUST00000215600.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	TTCATTAGCACCAGAATTCAAGTAGATAATGCAGGTTTCACACACTaGGGCTTGTTCTACATTCTAGAGGAAAATAAAATGGGTGTATAT	+
Preference number: 1 (lower is better) Translates to: FISTRIQVDNAGFTH*GLFYILEENKMGVY Trigger: ATATACACCCATTTTATTTTCCTCTAGAATGTAGAACAAGCCCCAGTGTGTGAAACCTGCATTATCTACTTGAATTCTGGTGCTAATGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
3UTR-3UTR CCA 90 bp	AGAAACTTCATTAGCACCAGAATTCAAGTAGATAATGCAGGTTTCACACACTGGGTGTATATGCAAACCTaGTTTGAAGGATTTGTACGG	+
Preference number: 2 (lower is better) Translates to: RNFISTRIQVDNAGFTHWVYMQT*FEGFVR Trigger: CCGTACAAATCCTTCAAACCAGGTTTGCATATACAC...CCAGTGTGTGAAACCTGCATTATCTACTTGAATTCTGGTGCTAATGAAGTTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
3UTR CCA 72 bp	ACCAGAATTCAAGTAGATAATGCAGGTTTCACACACTaGGGCTTGTTCTACATTCTAGAGGAAAATAAAATG	+
Preference number: 3 (lower is better) Translates to: TRIQVDNAGFTH*GLFYILEENKM Trigger: CATTTTATTTTCCTCTAGAATGTAGAACAAGCCCCAGTGTGTGAAACCTGCATTATCTACTTGAATTCTGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
3UTR GCA 72 bp	ATCTGTTTATATTTCGCAACAGGCTTGGCAGTTATATaGAGCAACAAGTGTTCAAAGAAGGAAATTATTCTC	+
Preference number: 3 (lower is better) Translates to: ICLYFATGLAVI*SNKCSKKEIIL Trigger: GAGAATAATTTCCTTCTTTGAACACTTGTTGCTGCATATAACTGCCAAGCCTGTTGCGAAATATAAACAGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
CDS-3UTR GCA 90 bp	AGAAACTTCATTAGCACCAGAATTCAAGTAGATAATGCAGGTTTCACACACTGGCCAAACAATGGAGCCTaGAGCTCAGGGTTCTCAGTG	+
Preference number: 4 (lower is better) Translates to: RNFISTRIQVDNAGFTHWPNNGA*SSGFSV Trigger: CACTGAGAACCCTGAGCTGCAGGCTCCATTGTTTGG...CCAGTGTGTGAAACCTGCATTATCTACTTGAATTCTGGTGCTAATGAAGTTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
CDS-3UTR TCA 90 bp	GATAATGCAGGTTTCACACACTGGGGCTTGTTCTACATTCTAGAGGAAAATAAACCAACATACTTTATGTaGCATGATGACAGTGTAGAG	+
Preference number: 4 (lower is better) Translates to: DNAGFTHWGLFYILEENKPTYFM*HDDSVE Trigger: CTCTACACTGTCATCATGTCACATAAAGTATGTTGG...TTTATTTTCCTCTAGAATGTAGAACAAGCCCCAGTGTGTGAAACCTGCATTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
CDS-3UTR GCA 90 bp	TGGCAGTTATATGCAGCAACAAGTGTTCAAAGAAGGAAATTATTCTCCTCTAATGCGGTCATAGGACATTaGAGACAAAATAAAAAGCTC	+
Preference number: 4 (lower is better) Translates to: WQLYAATSVQRRKLFSSNAVIGH*RQNKKL Trigger: GAGCTTTTTATTTTGTCTGCAATGTCCTATGACCGC...ATTAGAGGAGAATAATTTCCTTCTTTGAACACTTGTTGCTGCATATAACTGCCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
CDS-3UTR CCA 90 bp	TGGCAGTTATATGCAGCAACAAGTGTTCAAAGAAGGAAATTATTCTCCTCTAATGTTTACCAACATTTTTaGTCCCACAGTTGTCGAATA	+
Preference number: 4 (lower is better) Translates to: WQLYAATSVQRRKLFSSNVYQHF*SHSCRI Trigger: TATTCGACAACTGTGGGACCAAAAATGTTGGTAAAC...ATTAGAGGAGAATAATTTCCTTCTTTGAACACTTGTTGCTGCATATAACTGCCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
CDS-3UTR CAA 90 bp	AGAAACTTCATTAGCACCAGAATTCAAGTAGATAATGCAGGTTTCACACACTGGTTTTTGGTCCCACAGTaGTCGAATAAACAAAGTCAG	+
Preference number: 5 (lower is better) Translates to: RNFISTRIQVDNAGFTHWFLVPQ*SNKQSQ Trigger: CTGACTTTGTTTATTCGACAACTGTGGGACCAAAAA...CCAGTGTGTGAAACCTGCATTATCTACTTGAATTCTGGTGCTAATGAAGTTTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215600.2
CDS-3UTR CAA 90 bp	AGAAACTTCATTAGCACCAGAATTCAAGTAGATAATGCAGGTTTCACACACTGGAGTTTACCAACATTTTaGGTCCCACAGTTGTCGAAT	+
Preference number: 5 (lower is better) Translates to: RNFISTRIQVDNAGFTHWSLPTF*VPQLSN Trigger: ATTCGACAACTGTGGGACCAAAAATGTTGGTAAACT...CCAGTGTGTGAAACCTGCATTATCTACTTGAATTCTGGTGCTAATGAAGTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215600.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu