Pregenerated sensors for OLFR1020 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046975Ensembl transcript IDs: ENSMUST00000055840.7, ENSMUST00000215347.3
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAAGCCCTTGGTCCTCTTAAGGGTCAATGCCCCAGGGTAGAAGAATaGCAGGGTGGGAAGGCCAGAGTGGGTAGGTCGGTGGATGGGTGG | + |
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Preference number: 1 (lower is better) Translates to: EALGPLKGQCPRVEE*QGGKARVGRSVDGW Trigger: CCACCCATCCACCGACCTACCCACTCTGGCCTTCCCACCCTGGCATTCTTCTACCCTGGGGCATTGACCCTTAAGAGGACCAAGGGCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR GCA 90 bp | TGTTGTGTCTCATTTAGGATGGTTGACTGCACAATGCATGAAACATaGGGCCATCTGCAGTCAGTCAGTGCTGTTCAGATCACTGAAATT | + |
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Preference number: 1 (lower is better) Translates to: CCVSFRMVDCTMHET*GHLQSVSAVQITEI Trigger: AATTTCAGTGATCTGAACAGCACTGACTGACTGCAGATGGCCGCATGTTTCATGCATTGTGCAGTCAACCATCCTAAATGAGACACAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR-3UTR CCA 90 bp | GGATGGCCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTGTGGGAAGGCCAGAGTaGGTAGGTCGGTGGATGGGT | + |
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Preference number: 2 (lower is better) Translates to: GWPCQASKGEEALGPLKGVGRPE*VGRWMG Trigger: ACCCATCCACCGACCTACCCACTCTGGCCTTCCCAC...ACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCTGACAAGGCCATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR-3UTR TCA 90 bp | GTCTCATTTAGGATGGTTGACTGCACAATGCATGAAACATGCGGCCATCTGCAGTGTGGAAGTACAATTTaGGACAAGACAGAACTACTA | + |
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Preference number: 2 (lower is better) Translates to: VSFRMVDCTMHETCGHLQCGSTI*DKTELL Trigger: TAGTAGTTCTGTCTTGTCTCAAATTGTACTTCCACA...CTGCAGATGGCCGCATGTTTCATGCATTGTGCAGTCAACCATCCTAAATGAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR-3UTR TCA 90 bp | GCCAAGATTCCTTGTTGTGTCTCATTTAGGATGGTTGACTGCACAATGCATGAATTGACAAACTACAGATaGACAGGCCACTGTGGAAGT | + |
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Preference number: 2 (lower is better) Translates to: AKIPCCVSFRMVDCTMHELTNYR*TGHCGS Trigger: ACTTCCACAGTGGCCTGTTCATCTGTAGTTTGTCAA...TTCATGCATTGTGCAGTCAACCATCCTAAATGAGACACAACAAGGAATCTTGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR-3UTR CCA 90 bp | CTACTAGAGCCTAGTTCTTTATGCACTCATCATGTTCTATTCTATTTGCCTAATAGGTCGGTGGATGGGTaGGAGGGTGGAAGAACAACT | + |
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Preference number: 2 (lower is better) Translates to: LLEPSSLCTHHVLFYLPNRSVDG*EGGRTT Trigger: AGTTGTTCTTCCACCCTCCCACCCATCCACCGACCT...ATTAGGCAAATAGAATAGAACATGATGAGTGCATAAAGAACTAGGCTCTAGTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR-3UTR TCA 90 bp | TATTTGCCTAATTCTATTGTCCCCCTGATAATACATCCTAATAGCCATTCTCAATTCCAGAGGGGAAACTaGAAGGGGATAACATTTCAA | + |
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Preference number: 2 (lower is better) Translates to: YLPNSIVPLIIHPNSHSQFQRGN*KGITFQ Trigger: TTGAAATGTTATCCCCTTTCAGTTTCCCCTCTGGAA...TTGAGAATGGCTATTAGGATGTATTATCAGGGGGACAATAGAATTAGGCAAATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR CAA 90 bp | CTACTAGAGCCTAGTTCTTTATGCACTCATCATGTTCTATTCTATTaGCCTAATTCTATTGTCCCCCTGATAATACATCCTAATAGCCAT | + |
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Preference number: 2 (lower is better) Translates to: LLEPSSLCTHHVLFY*PNSIVPLIIHPNSH Trigger: ATGGCTATTAGGATGTATTATCAGGGGGACAATAGAATTAGGCAAATAGAATAGAACATGATGAGTGCATAAAGAACTAGGCTCTAGTAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR-3UTR TCA 90 bp | CTACTAGAGCCTAGTTCTTTATGCACTCATCATGTTCTATTCTATTTGCCTAATCCTCAAGTATTGTTTTaGTTCCTCATAAGTGCCCAT | + |
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Preference number: 2 (lower is better) Translates to: LLEPSSLCTHHVLFYLPNPQVLF*FLISAH Trigger: ATGGGCACTTATGAGGAATCAAAACAATACTTGAGG...ATTAGGCAAATAGAATAGAACATGATGAGTGCATAAAGAACTAGGCTCTAGTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR GCA 72 bp | AAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTCAATaGCCCAGGGTAGAAGAATGCCAGGGTGGGAAGGCC | + |
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Preference number: 3 (lower is better) Translates to: KGEEALGPLKGQ*PRVEECQGGKA Trigger: GGCCTTCCCACCCTGGCATTCTTCTACCCTGGGGCATTGACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR CCA 72 bp | AAACACCCTGTGTCCAATCACATATGTAGCAGAGGATaGCCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: KHPVSNHICSRG*PCQASKGEEAL Trigger: AAGGGCTTCTTCTCCCTTTGATGCCTGACAAGGCCATCCTCTGCTACATATGTGATTGGACACAGGGTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR GCA 72 bp | TCATTTAGGATGGTTGACTGCACAATGCATGAAACATaGGGCCATCTGCAGTCAGTCAGTGCTGTTCAGATC | + |
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Preference number: 3 (lower is better) Translates to: SFRMVDCTMHET*GHLQSVSAVQI Trigger: GATCTGAACAGCACTGACTGACTGCAGATGGCCGCATGTTTCATGCATTGTGCAGTCAACCATCCTAAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| 3UTR CCA 72 bp | ATTCCTATTGACAAACTACAGATGAACAGGCCACTGTaGAAGTACAATTTGAGACAAGACAGAACTACTAGA | + |
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Preference number: 3 (lower is better) Translates to: IPIDKLQMNRPL*KYNLRQDRTTR Trigger: TCTAGTAGTTCTGTCTTGTCTCAAATTGTACTTCCACAGTGGCCTGTTCATCTGTAGTTTGTCAATAGGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR TCA 90 bp | CCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTCAATGCGTGTCTTCCCTCTGCTaGAGGCATCTTCAGTATGGC | + |
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Preference number: 4 (lower is better) Translates to: PCQASKGEEALGPLKGQCVSSLC*RHLQYG Trigger: GCCATACTGAAGATGCCTTCAGCAGAGGGAAGACAC...GCATTGACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCTGACAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR TCA 90 bp | GGATGGCCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTAAATTCTCCCAGACATaGGAACTGGGTATAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: GWPCQASKGEEALGPLKGKFSQT*ELGIAG Trigger: CCCTGCTATACCCAGTTCTCATGTCTGGGAGAATTT...ACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCTGACAAGGCCATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CCA 90 bp | GGATGGCCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTAAAGTCATCCCTGTGTaGATGGCTGCATTGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: GWPCQASKGEEALGPLKGKVIPV*MAALPK Trigger: CTTTGGCAATGCAGCCATCCACACAGGGATGACTTT...ACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCTGACAAGGCCATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR TCA 90 bp | AGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTCAATGCCCCAGGGCAAGTCTGGATTGTCTaGGAGACCCAAAAGGATAAA | + |
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Preference number: 4 (lower is better) Translates to: RHQREKKPLVLLRVNAPGQVWIV*ETQKDK Trigger: TTTATCCTTTTGGGTCTCTCAGACAATCCAGACTTG...CCCTGGGGCATTGACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR TCA 90 bp | GAAGAACAACTCATAGAAGCAGTGGGAGTGGTGATGGGATACGGGGGTTCCAGACACAAAAGGACAGTCTaGAAGTCATCCCTGTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: EEQLIEAVGVVMGYGGSRHKRTV*KSSLCG Trigger: TCCACACAGGGATGACTTTCAGACTGTCCTTTTGTG...TCTGGAACCCCCGTATCCCATCACCACTCCCACTGCTTCTATGAGTTGTTCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CCA 90 bp | CCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTCAATGCGAGTTTGAGCAGGGGTaGGGTGTCACAATAGAAATG | + |
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Preference number: 4 (lower is better) Translates to: PCQASKGEEALGPLKGQCEFEQG*GVTIEM Trigger: CATTTCTATTGTGACACCCCACCCCTGCTCAAACTC...GCATTGACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCTGACAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR TCA 90 bp | GGATGGCCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTGTGTCATCGTGTAGATaGTCAGGAATAATGCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: GWPCQASKGEEALGPLKGVSSCR*SGIMQR Trigger: TCTTTGCATTATTCCTGATCATCTACACGATGACAC...ACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCTGACAAGGCCATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CCA 90 bp | CCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTCAATGCGTGGCATTCTTATTTTaGATTCCTTTTCCACTCCTG | + |
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Preference number: 4 (lower is better) Translates to: PCQASKGEEALGPLKGQCVAFLF*IPFPLL Trigger: CAGGAGTGGAAAAGGAATCCAAAATAAGAATGCCAC...GCATTGACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCTGACAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR TCA 90 bp | GCCAAGATTCCTTGTTGTGTCTCATTTAGGATGGTTGACTGCACAATGCATGAATCTTATCCTCAGCCATaGGGTTCACTAGCATCTTGG | + |
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Preference number: 4 (lower is better) Translates to: AKIPCCVSFRMVDCTMHESYPQP*GSLASW Trigger: CCAAGATGCTAGTGAACCTCATGGCTGAGGATAAGA...TTCATGCATTGTGCAGTCAACCATCCTAAATGAGACACAACAAGGAATCTTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR TCA 90 bp | ATTCCTTGTTGTGTCTCATTTAGGATGGTTGACTGCACAATGCATGAAACATGCCTAGCATCTTGGGGGTaGCAGAAGAAGAATAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: IPCCVSFRMVDCTMHETCLASWG*QKKNKR Trigger: CCTCTTATTCTTCTTCTGTCACCCCCAAGATGCTAG...GCATGTTTCATGCATTGTGCAGTCAACCATCCTAAATGAGACACAACAAGGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CCA 90 bp | CTACTAGAGCCTAGTTCTTTATGCACTCATCATGTTCTATTCTATTTGCCTAATTCATCCCTGTGTGGATaGCTGCATTGCCAAAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LLEPSSLCTHHVLFYLPNSSLCG*LHCQSL Trigger: CAGGCTTTGGCAATGCAGCCATCCACACAGGGATGA...ATTAGGCAAATAGAATAGAACATGATGAGTGCATAAAGAACTAGGCTCTAGTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR GCA 90 bp | TATTTGCCTAATTCTATTGTCCCCCTGATAATACATCCTAATAGCCATTCTCAAGCAAAGAGGACACCTTaGAAGTCTGGATTGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: YLPNSIVPLIIHPNSHSQAKRTP*KSGLSE Trigger: CTCAGACAATCCAGACTTGCAAGGTGTCCTCTTTGC...TTGAGAATGGCTATTAGGATGTATTATCAGGGGGACAATAGAATTAGGCAAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR GCA 90 bp | CTATTCTATTTGCCTAATTCTATTGTCCCCCTGATAATACATCCTAATAGCCATTGTGGATGGCTGCATTaGCAAAGCCTGCTAAGAATG | + |
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Preference number: 4 (lower is better) Translates to: LFYLPNSIVPLIIHPNSHCGWLH*QSLLRM Trigger: CATTCTTAGCAGGCTTTGGCAATGCAGCCATCCACA...ATGGCTATTAGGATGTATTATCAGGGGGACAATAGAATTAGGCAAATAGAATAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CCA 90 bp | GCCAAGATTCCTTGTTGTGTCTCATTTAGGATGGTTGACTGCACAATGCATGAAATTCTGTCACTTCTGTaGCATTCTTATTTTGGATTC | + |
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Preference number: 4 (lower is better) Translates to: AKIPCCVSFRMVDCTMHEILSLL*HSYFGF Trigger: GAATCCAAAATAAGAATGCCACAGAAGTGACAGAAT...TTCATGCATTGTGCAGTCAACCATCCTAAATGAGACACAACAAGGAATCTTGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CCA 90 bp | CTACTAGAGCCTAGTTCTTTATGCACTCATCATGTTCTATTCTATTTGCCTAATCCGAAGAAAAAGAACTaGGTAGCACATCCATTGAAA | + |
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Preference number: 4 (lower is better) Translates to: LLEPSSLCTHHVLFYLPNPKKKN*VAHPLK Trigger: TTTCAATGGATGTGCTACCCAGTTCTTTTTCTTCGG...ATTAGGCAAATAGAATAGAACATGATGAGTGCATAAAGAACTAGGCTCTAGTAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CAA 90 bp | GGATGGCCTTGTCAGGCATCAAAGGGAGAAGAAGCCCTTGGTCCTCTTAAGGGTCCTTGCAAGTCTGGATaGTCTGAGAGACCCAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: GWPCQASKGEEALGPLKGPCKSG*SERPKR Trigger: CCTTTTGGGTCTCTCAGACAATCCAGACTTGCAAGG...ACCCTTAAGAGGACCAAGGGCTTCTTCTCCCTTTGATGCCTGACAAGGCCATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CAA 90 bp | GAAGAACAACTCATAGAAGCAGTGGGAGTGGTGATGGGATACGGGGGTTCCAGAACACAACTGATGACATaGAAACTGGAGAAGGCCATG | + |
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Preference number: 5 (lower is better) Translates to: EEQLIEAVGVVMGYGGSRTQLMT*KLEKAM Trigger: CATGGCCTTCTCCAGTTTCAATGTCATCAGTTGTGT...TCTGGAACCCCCGTATCCCATCACCACTCCCACTGCTTCTATGAGTTGTTCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CAA 90 bp | GTCTCATTTAGGATGGTTGACTGCACAATGCATGAAACATGCGGCCATCTGCAGTGTGGCATTCTTATTTaGGATTCCTTTTCCACTCCT | + |
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Preference number: 5 (lower is better) Translates to: VSFRMVDCTMHETCGHLQCGILI*DSFSTP Trigger: AGGAGTGGAAAAGGAATCCAAAATAAGAATGCCACA...CTGCAGATGGCCGCATGTTTCATGCATTGTGCAGTCAACCATCCTAAATGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CAA 90 bp | ATTCCTTGTTGTGTCTCATTTAGGATGGTTGACTGCACAATGCATGAAACATGCAGGTTCACTAGCATCTaGGGGGTGACAGAAGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: IPCCVSFRMVDCTMHETCRFTSI*GVTEEE Trigger: TTCTTCTTCTGTCACCCCCAAGATGCTAGTGAACCT...GCATGTTTCATGCATTGTGCAGTCAACCATCCTAAATGAGACACAACAAGGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CAA 90 bp | CTATTCTATTTGCCTAATTCTATTGTCCCCCTGATAATACATCCTAATAGCCATTCAGAGCAAGAGAGTTaGAGCAGGGGTGGGGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: LFYLPNSIVPLIIHPNSHSEQES*SRGGVS Trigger: TGACACCCCACCCCTGCTCAAACTCTCTTGCTCTGA...ATGGCTATTAGGATGTATTATCAGGGGGACAATAGAATTAGGCAAATAGAATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CAA 90 bp | ATTCCTTGTTGTGTCTCATTTAGGATGGTTGACTGCACAATGCATGAAACATGCTGGGTAGCACATCCATaGAAAGAAATGCTCTTATCC | + |
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Preference number: 5 (lower is better) Translates to: IPCCVSFRMVDCTMHETCWVAHP*KEMLLS Trigger: GGATAAGAGCATTTCTTTCAATGGATGTGCTACCCA...GCATGTTTCATGCATTGTGCAGTCAACCATCCTAAATGAGACACAACAAGGAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS-3UTR CAA 90 bp | TATTTGCCTAATTCTATTGTCCCCCTGATAATACATCCTAATAGCCATTCTCAAGTGTGGATGGCTGCATaGCCAAAGCCTGCTAAGAAT | + |
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Preference number: 5 (lower is better) Translates to: YLPNSIVPLIIHPNSHSQVWMAA*PKPAKN Trigger: ATTCTTAGCAGGCTTTGGCAATGCAGCCATCCACAC...TTGAGAATGGCTATTAGGATGTATTATCAGGGGGACAATAGAATTAGGCAAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215347.3 |
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| CDS CCA 72 bp | GAGCCACAAAAGGACAGTCTGAAAGTCATCCCTGTGTaGATGGCTGCATTGCCAAAGCCTGCTAAGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: EPQKDSLKVIPV*MAALPKPAKNE Trigger: TTCATTCTTAGCAGGCTTTGGCAATGCAGCCATCCACACAGGGATGACTTTCAGACTGTCCTTTTGTGGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055840.7 ENSMUST00000215347.3 |
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| CDS CAA 72 bp | GACAGTCTGAAAGTCATCCCTGTGTGGATGGCTGCATaGCCAAAGCCTGCTAAGAATGAAGTAGACACCAAC | + |
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Preference number: 6 (lower is better) Translates to: DSLKVIPVWMAA*PKPAKNEVDTN Trigger: GTTGGTGTCTACTTCATTCTTAGCAGGCTTTGGCAATGCAGCCATCCACACAGGGATGACTTTCAGACTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055840.7 ENSMUST00000215347.3 |
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| CDS CAA 90 bp | CCACAAAAGGACAGTCTGAAAGTCATCCCTGTGTGGATGGCTGCATaGCCAAAGCCTGCTAAGAATGAAGTAGACACCAACATGAAACAA | + |
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Preference number: 6 (lower is better) Translates to: PQKDSLKVIPVWMAA*PKPAKNEVDTNMKQ Trigger: TTGTTTCATGTTGGTGTCTACTTCATTCTTAGCAGGCTTTGGCAATGCAGCCATCCACACAGGGATGACTTTCAGACTGTCCTTTTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055840.7 ENSMUST00000215347.3 |
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