RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000100923

Ensembl transcript IDs: ENSMUST00000187570.3, ENSMUST00000217290.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATCTGACACTCAGACTTGCCAAGAACTCAGCCCATTTTCACAGGTaGTCACAGTCCACCTCTCCCAGGCTCCTTCTGTGCAAAGTTGTT +
Preference number: 1 (lower is better)
Translates to: HLTLRLAKNSAHFHR*SQSTSPRLLLCKVV
Trigger: AACAACTTTGCACAGAAGGAGCCTGGGAGAGGTGGACTGTGAGCACCTGTGAAAATGGGCTGAGTTCTTGGCAAGTCTGAGTGTCAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR GCA 90 bp CAGTTGGCAAGACAGACACTCATAGTTCTGCTGGGAGAGCTGTGTTaGTTGACTGCAGCAGAAATGATTCTGTCTTCTTCTCTAAGATGG +
Preference number: 1 (lower is better)
Translates to: QLARQTLIVLLGELC*LTAAEMILSSSLRW
Trigger: CCATCTTAGAGAAGAAGACAGAATCATTTCTGCTGCAGTCAAGCAACACAGCTCTCCCAGCAGAACTATGAGTGTCTGTCTTGCCAACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR TCA 90 bp TGCAAAGTTGTTTCTACATCTGCATTTATCCTTACTGAGCAGCAATaGCAGACAGTAACCCAGGGAGAAGATCCTCACTCCAGCTCCCAA +
Preference number: 1 (lower is better)
Translates to: CKVVSTSAFILTEQQ*QTVTQGEDPHSSSQ
Trigger: TTGGGAGCTGGAGTGAGGATCTTCTCCCTGGGTTACTGTCTGTCATTGCTGCTCAGTAAGGATAAATGCAGATGTAGAAACAACTTTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR TCA 90 bp GCAGAAATGATTCTGTCTTCTTCTCTAAGATGGAAAATTAGCCCATaGTTCAAATTCACATGGTACACTGGGCAGTTCCACTCACGATTG +
Preference number: 1 (lower is better)
Translates to: AEMILSSSLRWKISP*FKFTWYTGQFHSRL
Trigger: CAATCGTGAGTGGAACTGCCCAGTGTACCATGTGAATTTGAATCATGGGCTAATTTTCCATCTTAGAGAAGAAGACAGAATCATTTCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR GCA 90 bp AGATACTCAGAGTTGGCCACAAGTGCCTTTATCCTAAGAGCATCTTaGCATCCTAGGACTGGTTTTCTTATTGATTGTTTTGGTTTGGTT +
Preference number: 1 (lower is better)
Translates to: RYSELATSAFILRAS*HPRTGFLIDCFGLV
Trigger: AACCAAACCAAAACAATCAATAAGAAAACCAGTCCTAGGATGGCAAGATGCTCTTAGGATAAAGGCACTTGTGGCCAACTCTGAGTATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR CAA 90 bp CCAGTTGGCAAGACAGACACTCATAGTTCTGCTGGGAGAGCTGTGTaGCTTGACTGCAGCAGAAATGATTCTGTCTTCTTCTCTAAGATG +
Preference number: 2 (lower is better)
Translates to: PVGKTDTHSSAGRAV*LDCSRNDSVFFSKM
Trigger: CATCTTAGAGAAGAAGACAGAATCATTTCTGCTGCAGTCAAGCAACACAGCTCTCCCAGCAGAACTATGAGTGTCTGTCTTGCCAACTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR TCA 90 bp ATTGTTCACATCACTAACAGGGAAGGGAGGAATCTAGCCAGTTGGCAAGACAGAACAGGGCCTAAGTTATaGCTGATGTTAGACAGGGTG +
Preference number: 2 (lower is better)
Translates to: IVHITNREGRNLASWQDRTGPKL*LMLDRV
Trigger: CACCCTGTCTAACATCAGTCATAACTTAGGCCCTGT...TCTGTCTTGCCAACTGGCTAGATTCCTCCCTTCCCTGTTAGTGATGTGAACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR CAA 90 bp TTGGGTCACAGCGTCCACTGTAGGACACAACATGGGGATCTGACTTaGAGTGCTGCCATTCATAATTTAAAACCATCTGACACTCAGACT +
Preference number: 2 (lower is better)
Translates to: LGHSVHCRTQHGDLT*SAAIHNLKPSDTQT
Trigger: AGTCTGAGTGTCAGATGGTTTTAAATTATGAATGGCAGCACTCAAAGTCAGATCCCCATGTTGTGTCCTACAGTGGACGCTGTGACCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR TCA 90 bp ATTGTTCACATCACTAACAGGGAAGGGAGGAATCTAGCCAGTTGGCAAGACAGAAAAGGAATGAAGTTGTaGGCCCAAAGTGATGCTGAG +
Preference number: 2 (lower is better)
Translates to: IVHITNREGRNLASWQDRKGMKL*AQSDAE
Trigger: CTCAGCATCACTTTGGGCTCACAACTTCATTCCTTT...TCTGTCTTGCCAACTGGCTAGATTCCTCCCTTCCCTGTTAGTGATGTGAACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR GCA 90 bp ATTGTTCACATCACTAACAGGGAAGGGAGGAATCTAGCCAGTTGGCAAGACAGAGTTTTGACACCCAATTaGCCTTTCCCATGGAACTAC +
Preference number: 2 (lower is better)
Translates to: IVHITNREGRNLASWQDRVLTPN*PFPWNY
Trigger: GTAGTTCCATGGGAAAGGGCAATTGGGTGTCAAAAC...TCTGTCTTGCCAACTGGCTAGATTCCTCCCTTCCCTGTTAGTGATGTGAACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR CAA 90 bp TTGGCAAGACAGACACTCATAGTTCTGCTGGGAGAGCTGTGTTGCTaGACTGCAGCAGAAATGATTCTGTCTTCTTCTCTAAGATGGAAA +
Preference number: 2 (lower is better)
Translates to: LARQTLIVLLGELCC*TAAEMILSSSLRWK
Trigger: TTTCCATCTTAGAGAAGAAGACAGAATCATTTCTGCTGCAGTCAAGCAACACAGCTCTCCCAGCAGAACTATGAGTGTCTGTCTTGCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR TCA 90 bp AATGGAACCCCAAAGGAACTTTTAGATTCCTGGTCAATGATAAGTAGGAGCCTTCTTACTGAGCAGCAATaGCAGACAGTAACCCAGGGA +
Preference number: 2 (lower is better)
Translates to: NGTPKELLDSWSMISRSLLTEQQ*QTVTQG
Trigger: TCCCTGGGTTACTGTCTGTCATTGCTGCTCAGTAAG...AAGGCTCCTACTTATCATTGACCAGGAATCTAAAAGTTCCTTTGGGGTTCCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR GCA 90 bp AGGACACAACATGGGGATCTGACTTTGAGTGCTGCCATTCATAATTTAAAACCACCCAGGCTCCTTCTGTaGAAAGTTGTTTCTACATCT +
Preference number: 2 (lower is better)
Translates to: RTQHGDLTLSAAIHNLKPPRLLL*KVVSTS
Trigger: AGATGTAGAAACAACTTTGCACAGAAGGAGCCTGGG...TGGTTTTAAATTATGAATGGCAGCACTCAAAGTCAGATCCCCATGTTGTGTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR CCA 90 bp ATTGTTCACATCACTAACAGGGAAGGGAGGAATCTAGCCAGTTGGCAAGACAGAAATTGCCCTTTCCCATaGAACTACTCAGAATATGAA +
Preference number: 2 (lower is better)
Translates to: IVHITNREGRNLASWQDRNCPFP*NYSEYE
Trigger: TTCATATTCTGAGTAGTTCCATGGGAAAGGGCAATT...TCTGTCTTGCCAACTGGCTAGATTCCTCCCTTCCCTGTTAGTGATGTGAACAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR GCA 90 bp CCCAAAGTGATGCTGAGGAACATAGGAGAAATTGAAGAAGAAGCTAGGGATAAAATCCTAAGAGCATCTTaGCATCCTAGGACTGGTTTT +
Preference number: 2 (lower is better)
Translates to: PKVMLRNIGEIEEEARDKILRAS*HPRTGF
Trigger: AAAACCAGTCCTAGGATGGCAAGATGCTCTTAGGAT...TTTATCCCTAGCTTCTTCTTCAATTTCTCCTATGTTCCTCAGCATCACTTTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR TCA 90 bp AACGGAAATGGAACCCCAAAGGAACTTTTAGATTCCTGGTCAATGATAAGTAGGGTCTATAAAAAGGAATaGAGTTGTGAGCCCAAAGTG +
Preference number: 2 (lower is better)
Translates to: NGNGTPKELLDSWSMISRVYKKE*SCEPKV
Trigger: CACTTTGGGCTCACAACTTCATTCCTTTTTATAGAC...CCTACTTATCATTGACCAGGAATCTAAAAGTTCCTTTGGGGTTCCATTTCCGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR GCA 90 bp AATGGAACCCCAAAGGAACTTTTAGATTCCTGGTCAATGATAAGTAGGAGCCTTAAGAAGGCATTAAAATaGTATGGCTGCTGGGGAATA +
Preference number: 2 (lower is better)
Translates to: NGTPKELLDSWSMISRSLKKALK*YGCWGI
Trigger: TATTCCCCAGCAGCCATAGCATTTTAATGCCTTCTT...AAGGCTCCTACTTATCATTGACCAGGAATCTAAAAGTTCCTTTGGGGTTCCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR GCA 90 bp AACGGAAATGGAACCCCAAAGGAACTTTTAGATTCCTGGTCAATGATAAGTAGGGTGTGGACAGATTCATaGATGTACATAACTAACTGT +
Preference number: 2 (lower is better)
Translates to: NGNGTPKELLDSWSMISRVWTDS*MYITNC
Trigger: ACAGTTAGTTATGTACATGCATGAATCTGTCCACAC...CCTACTTATCATTGACCAGGAATCTAAAAGTTCCTTTGGGGTTCCATTTCCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR CAA 90 bp CAGACAGTAACCCAGGGAGAAGATCCTCACTCCAGCTCCCAAACAAAGAAGGCACACATGCACACACACTaGTGTGTGGAGGACTTAATT +
Preference number: 3 (lower is better)
Translates to: QTVTQGEDPHSSSQTKKAHMHTH*CVEDLI
Trigger: AATTAAGTCCTCCACACACAAGTGTGTGTGCATGTG...TGCCTTCTTTGTTTGGGAGCTGGAGTGAGGATCTTCTCCCTGGGTTACTGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR CAA 90 bp GACAGTAACCCAGGGAGAAGATCCTCACTCCAGCTCCCAAACAAAGAAGGCATTTGTTTTGACACCCAATaGCCCTTTCCCATGGAACTA +
Preference number: 3 (lower is better)
Translates to: DSNPGRRSSLQLPNKEGICFDTQ*PFPMEL
Trigger: TAGTTCCATGGGAAAGGGCAATTGGGTGTCAAAACA...AATGCCTTCTTTGTTTGGGAGCTGGAGTGAGGATCTTCTCCCTGGGTTACTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR GCA 72 bp GCCATTCATAATTTAAAACCATCTGACACTCAGACTTaGCAAGAACTCAGCCCATTTTCACAGGTGCTCACA +
Preference number: 3 (lower is better)
Translates to: AIHNLKPSDTQT*QELSPFSQVLT
Trigger: TGTGAGCACCTGTGAAAATGGGCTGAGTTCTTGGCAAGTCTGAGTGTCAGATGGTTTTAAATTATGAATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR GCA 72 bp GAGTTGGCCACAAGTGCCTTTATCCTAAGAGCATCTTaGCATCCTAGGACTGGTTTTCTTATTGATTGTTTT +
Preference number: 3 (lower is better)
Translates to: ELATSAFILRAS*HPRTGFLIDCF
Trigger: AAAACAATCAATAAGAAAACCAGTCCTAGGATGGCAAGATGCTCTTAGGATAAAGGCACTTGTGGCCAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR TCA 72 bp ATTCTGTCTTCTTCTCTAAGATGGAAAATTAGCCCATaGTTCAAATTCACATGGTACACTGGGCAGTTCCAC +
Preference number: 3 (lower is better)
Translates to: ILSSSLRWKISP*FKFTWYTGQFH
Trigger: GTGGAACTGCCCAGTGTACCATGTGAATTTGAATCATGGGCTAATTTTCCATCTTAGAGAAGAAGACAGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR-3UTR CAA 90 bp AATGGAACCCCAAAGGAACTTTTAGATTCCTGGTCAATGATAAGTAGGAGCCTTGTTTGGTTTGCTGTCTaGTCTTCTATTTTTGTGTGT +
Preference number: 3 (lower is better)
Translates to: NGTPKELLDSWSMISRSLVWFAV*SSIFVC
Trigger: ACACACAAAAATAGAAGACAAGACAGCAAACCAAAC...AAGGCTCCTACTTATCATTGACCAGGAATCTAAAAGTTCCTTTGGGGTTCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR CCA 72 bp ACTGTAGTTGTTTTGACACCCAATTGCCCTTTCCCATaGAACTACTCAGAATATGAAATGTTTTTACTGATC +
Preference number: 3 (lower is better)
Translates to: TVVVLTPNCPFP*NYSEYEMFLLI
Trigger: GATCAGTAAAAACATTTCATATTCTGAGTAGTTCCATGGGAAAGGGCAATTGGGTGTCAAAACAACTACAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CCA 90 bp CAGACAGTAACCCAGGGAGAAGATCCTCACTCCAGCTCCCAAACAAAGAAGGCAGGAGCACACTCTCTGTaGATCCCAGAGCAAGAAATA +
Preference number: 4 (lower is better)
Translates to: QTVTQGEDPHSSSQTKKAGAHSL*IPEQEI
Trigger: TATTTCTTGCTCTGGGATCCACAGAGAGTGTGCTCC...TGCCTTCTTTGTTTGGGAGCTGGAGTGAGGATCTTCTCCCTGGGTTACTGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CCA 90 bp CAGACAGTAACCCAGGGAGAAGATCCTCACTCCAGCTCCCAAACAAAGAAGGCACAACAATCACTGCTCTaGCCACAAACATCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: QTVTQGEDPHSSSQTKKAQQSLL*PQTSWP
Trigger: AGGCCAAGATGTTTGTGGCCAGAGCAGTGATTGTTG...TGCCTTCTTTGTTTGGGAGCTGGAGTGAGGATCTTCTCCCTGGGTTACTGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR GCA 90 bp CAGACAGTAACCCAGGGAGAAGATCCTCACTCCAGCTCCCAAACAAAGAAGGCACACTGCAACAATCACTaGTCTGGCCACAAACATCTT +
Preference number: 4 (lower is better)
Translates to: QTVTQGEDPHSSSQTKKAHCNNH*SGHKHL
Trigger: AAGATGTTTGTGGCCAGAGCAGTGATTGTTGCAGTG...TGCCTTCTTTGTTTGGGAGCTGGAGTGAGGATCTTCTCCCTGGGTTACTGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR TCA 90 bp ACTAACTGTAGTTGTTTTGACACCCAATTGCCCTTTCCCATGGAACTACTCAGACTTCACAGACCAACTTaGGGAAGACAGGCATCTCAC +
Preference number: 4 (lower is better)
Translates to: TNCSCFDTQLPFPMELLRLHRPT*GRQASH
Trigger: GTGAGATGCCTGTCTTCCTCAAGTTGGTCTGTGAAG...TCTGAGTAGTTCCATGGGAAAGGGCAATTGGGTGTCAAAACAACTACAGTTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR GCA 90 bp AACGGAAATGGAACCCCAAAGGAACTTTTAGATTCCTGGTCAATGATAAGTAGGGGAAGCAATAGCCAATaGCTGGCAGAGAACAGGGTG +
Preference number: 4 (lower is better)
Translates to: NGNGTPKELLDSWSMISRGSNSQ*LAENRV
Trigger: CACCCTGTTCTCTGCCAGGCATTGGCTATTGCTTCC...CCTACTTATCATTGACCAGGAATCTAAAAGTTCCTTTGGGGTTCCATTTCCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CCA 90 bp AGGACACAACATGGGGATCTGACTTTGAGTGCTGCCATTCATAATTTAAAACCAGCAATAGCCAATGCCTaGCAGAGAACAGGGTGCATG +
Preference number: 4 (lower is better)
Translates to: RTQHGDLTLSAAIHNLKPAIANA*QRTGCM
Trigger: CATGCACCCTGTTCTCTGCCAGGCATTGGCTATTGC...TGGTTTTAAATTATGAATGGCAGCACTCAAAGTCAGATCCCCATGTTGTGTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR CAA 72 bp AAGACAGACACTCATAGTTCTGCTGGGAGAGCTGTGTaGCTTGACTGCAGCAGAAATGATTCTGTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: KTDTHSSAGRAV*LDCSRNDSVFF
Trigger: GAAGAAGACAGAATCATTTCTGCTGCAGTCAAGCAACACAGCTCTCCCAGCAGAACTATGAGTGTCTGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CCA 90 bp GTTTTGACACCCAATTGCCCTTTCCCATGGAACTACTCAGAATATGAAATGTTTGGTCGTGTAGTGCAGTaGACGACACACAGCAGCATA +
Preference number: 4 (lower is better)
Translates to: VLTPNCPFPWNYSEYEMFGRVVQ*TTHSSI
Trigger: TATGCTGCTGTGTGTCGTCCACTGCACTACACGACC...AAACATTTCATATTCTGAGTAGTTCCATGGGAAAGGGCAATTGGGTGTCAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CCA 90 bp GACAGTAACCCAGGGAGAAGATCCTCACTCCAGCTCCCAAACAAAGAAGGCATTCAGAATAGCTGTCTTTaGGTTGTAAGTATGTGTAGA +
Preference number: 4 (lower is better)
Translates to: DSNPGRRSSLQLPNKEGIQNSCL*VVSMCR
Trigger: TCTACACATACTTACAACCCAAAGACAGCTATTCTG...AATGCCTTCTTTGTTTGGGAGCTGGAGTGAGGATCTTCTCCCTGGGTTACTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
3UTR CAA 72 bp AGCGTCCACTGTAGGACACAACATGGGGATCTGACTTaGAGTGCTGCCATTCATAATTTAAAACCATCTGAC +
Preference number: 4 (lower is better)
Translates to: SVHCRTQHGDLT*SAAIHNLKPSD
Trigger: GTCAGATGGTTTTAAATTATGAATGGCAGCACTCAAAGTCAGATCCCCATGTTGTGTCCTACAGTGGACGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR TCA 90 bp GTTTTGACACCCAATTGCCCTTTCCCATGGAACTACTCAGAATATGAAATGTTTAAGTGCAGGCCAGTCTaGGAAGCCCACCAAAATGAA +
Preference number: 4 (lower is better)
Translates to: VLTPNCPFPWNYSEYEMFKCRPV*EAHQNE
Trigger: TTCATTTTGGTGGGCTTCTCAGACTGGCCTGCACTT...AAACATTTCATATTCTGAGTAGTTCCATGGGAAAGGGCAATTGGGTGTCAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR GCA 90 bp AACGGAAATGGAACCCCAAAGGAACTTTTAGATTCCTGGTCAATGATAAGTAGGCCACAAACTTCCCCTTaGTCTCAGAATAGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: NGNGTPKELLDSWSMISRPQTSP*SQNSCL
Trigger: AAGACAGCTATTCTGAGAGCAAGGGGAAGTTTGTGG...CCTACTTATCATTGACCAGGAATCTAAAAGTTCCTTTGGGGTTCCATTTCCGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR TCA 90 bp ACACAACATGGGGATCTGACTTTGAGTGCTGCCATTCATAATTTAAAACCATCTGTATGTGTAGATGGCTaGGCCATAGAACAGAGAAAC +
Preference number: 4 (lower is better)
Translates to: TQHGDLTLSAAIHNLKPSVCVDG*AIEQRN
Trigger: GTTTCTCTGTTCTATGGCTCAGCCATCTACACATAC...AGATGGTTTTAAATTATGAATGGCAGCACTCAAAGTCAGATCCCCATGTTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CCA 90 bp AATGGAACCCCAAAGGAACTTTTAGATTCCTGGTCAATGATAAGTAGGAGCCTTGTAAGTATGTGTAGATaGCTGAGCCATAGAACAGAG +
Preference number: 4 (lower is better)
Translates to: NGTPKELLDSWSMISRSLVSMCR*LSHRTE
Trigger: CTCTGTTCTATGGCTCAGCCATCTACACATACTTAC...AAGGCTCCTACTTATCATTGACCAGGAATCTAAAAGTTCCTTTGGGGTTCCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CAA 90 bp GACAGTAACCCAGGGAGAAGATCCTCACTCCAGCTCCCAAACAAAGAAGGCATTCGTGCAGTTACTGACTaGACCTTCAGCACCGCCCTA +
Preference number: 5 (lower is better)
Translates to: DSNPGRRSSLQLPNKEGIRAVTD*TFSTAL
Trigger: TAGGGCGGTGCTGAAGGTCAAGTCAGTAACTGCACG...AATGCCTTCTTTGTTTGGGAGCTGGAGTGAGGATCTTCTCCCTGGGTTACTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CAA 90 bp ATTGTTCACATCACTAACAGGGAAGGGAGGAATCTAGCCAGTTGGCAAGACAGATCTTCACAGACCAACTaGAGGAAGACAGGCATCTCA +
Preference number: 5 (lower is better)
Translates to: IVHITNREGRNLASWQDRSSQTN*RKTGIS
Trigger: TGAGATGCCTGTCTTCCTCAAGTTGGTCTGTGAAGA...TCTGTCTTGCCAACTGGCTAGATTCCTCCCTTCCCTGTTAGTGATGTGAACAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS-3UTR CAA 90 bp ACTAACTGTAGTTGTTTTGACACCCAATTGCCCTTTCCCATGGAACTACTCAGAGCAATGATGGCTGTGTaGCCAAAGAGAGTTATAGAG +
Preference number: 5 (lower is better)
Translates to: TNCSCFDTQLPFPMELLRAMMAV*PKRVIE
Trigger: CTCTATAACTCTCTTTGGCAACACAGCCATCATTGC...TCTGAGTAGTTCCATGGGAAAGGGCAATTGGGTGTCAAAACAACTACAGTTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217290.2
CDS TCA 90 bp AATCAAAATATGAATAAAGAAGATGAGTTCAAGTGCAGGCCAGTCTaGGAAGCCCACCAAAATGAAGCCTCCTCCCAAACTGATATTGAA +
Preference number: 5 (lower is better)
Translates to: NQNMNKEDEFKCRPV*EAHQNEASSQTDIE
Trigger: TTCAATATCAGTTTGGGAGGAGGCTTCATTTTGGTGGGCTTCTCAGACTGGCCTGCACTTGAACTCATCTTCTTTATTCATATTTTGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000187570.3
ENSMUST00000217290.2
CDS TCA 72 bp GCCACAAGTCCCAGCAGCCTTTCTGCGTGCAGTTACTaGCTTGACCTTCAGCACCGCCCTAGCAATCTGTGC +
Preference number: 6 (lower is better)
Translates to: ATSPSSLSACSY*LDLQHRPSNLC
Trigger: GCACAGATTGCTAGGGCGGTGCTGAAGGTCAAGTCAGTAACTGCACGCAGAAAGGCTGCTGGGACTTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187570.3
ENSMUST00000217290.2
CDS CAA 90 bp AGCATGGTAGGCACTGCAACAATCACTGCTCTGGCCACAAACATCTaGGCCTCTGTTCCTCCTGTGTCTTCACAGACCAACTTGAGGAAG +
Preference number: 6 (lower is better)
Translates to: SMVGTATITALATNI*ASVPPVSSQTNLRK
Trigger: CTTCCTCAAGTTGGTCTGTGAAGACACAGGAGGAACAGAGGCCAAGATGTTTGTGGCCAGAGCAGTGATTGTTGCAGTGCCTACCATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187570.3
ENSMUST00000217290.2
CDS TCA 72 bp ATGAATAAAGAAGATGAGTTCAAGTGCAGGCCAGTCTaGGAAGCCCACCAAAATGAAGCCTCCTCCCAAACT +
Preference number: 6 (lower is better)
Translates to: MNKEDEFKCRPV*EAHQNEASSQT
Trigger: AGTTTGGGAGGAGGCTTCATTTTGGTGGGCTTCTCAGACTGGCCTGCACTTGAACTCATCTTCTTTATTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187570.3
ENSMUST00000217290.2
CDS CCA 72 bp CCACAAACTTCCCCTTGCTCTCAGAATAGCTGTCTTTaGGTTGTAAGTATGTGTAGATGGCTGAGCCATAGA +
Preference number: 6 (lower is better)
Translates to: PQTSPCSQNSCL*VVSMCRWLSHR
Trigger: TCTATGGCTCAGCCATCTACACATACTTACAACCCAAAGACAGCTATTCTGAGAGCAAGGGGAAGTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000187570.3
ENSMUST00000217290.2