RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFML2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046618

Ensembl transcript IDs: ENSMUST00000057279.6

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCCACACCCAGGGCCAAGGGAAAGGCCGCGGCCTCCAAGTTCTCTaGAGAGGTTGGAAGAGGAGCCCGTGGTGGTCAGCTGGGTGGGGG +
Preference number: 1 (lower is better)
Translates to: THTQGQGKGRGLQVL*RGWKRSPWWSAGWG
Trigger: CCCCCACCCAGCTGACCACCACGGGCTCCTCTTCCAACCTCTTCAGAGAACTTGGAGGCCGCGGCCTTTCCCTTGGCCCTGGGTGTGGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 90 bp ACCAGCATTCGACCAGAAGAGAAGCCTGGAACTGCACAACAGCAGTaGGTAGGTCCCAAAGACCTTGCTTGCGGAGCCCTGGAAGGGGAC +
Preference number: 1 (lower is better)
Translates to: TSIRPEEKPGTAQQQ*VGPKDLACGALEGD
Trigger: GTCCCCTTCCAGGGCTCCGCAAGCAAGGTCTTTGGGACCTACGCACTGCTGTTGTGCAGTTCCAGGCTTCTCTTCTGGTCGAATGCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 90 bp GCTGGGTGGGGGAAGCTGGATGTGGCTACCACTGTGAGTCAGACCTaGCTGGGCTGGCTGTCACTGTCCCTCTTTATTTCAGGAGTGAGT +
Preference number: 1 (lower is better)
Translates to: AGWGKLDVATTVSQT*LGWLSLSLFISGVS
Trigger: ACTCACTCCTGAAATAAAGAGGGACAGTGACAGCCAGCCCAGCCAGGTCTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 90 bp AGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTGCCTCCCAGGTaGATGGACCGAAGGCATGCGCCACCACATCCAACTATAGCCATG +
Preference number: 1 (lower is better)
Translates to: SLAWNSEICLPLPPR*MDRRHAPPHPTIAM
Trigger: CATGGCTATAGTTGGATGTGGTGGCGCATGCCTTCGGTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 90 bp GTCAAAAGGGAAAGCGCAGGGAAAGCTCCCGGCGCAGCGTTGCTGTaGAAGTGTCACCTACTGGGCACTGAGAAAGCACTCAAAGCCATC +
Preference number: 1 (lower is better)
Translates to: VKRESAGKAPGAALL*KCHLLGTEKALKAI
Trigger: GATGGCTTTGAGTGCTTTCTCAGTGCCCAGTAGGTGACACTTCCACAGCAACGCTGCGCCGGGAGCTTTCCCTGCGCTTTCCCTTTTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 90 bp AGAGAGTCAAAAGGGAAAGCGCAGGGAAAGCTCCCGGCGCAGCGTTaGTGTGGAAGTGTCACCTACTGGGCACTGAGAAAGCACTCAAAG +
Preference number: 1 (lower is better)
Translates to: RESKGKAQGKLPAQR*CGSVTYWALRKHSK
Trigger: CTTTGAGTGCTTTCTCAGTGCCCAGTAGGTGACACTTCCACAGCAACGCTGCGCCGGGAGCTTTCCCTGCGCTTTCCCTTTTGACTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 90 bp ATTTTTGGACCAGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTaGCTCCCAGGTGCATGGACCGAAGGCATGCGCCACCACATCCAA +
Preference number: 1 (lower is better)
Translates to: IFGPVWPGTQKSVCL*LPGAWTEGMRHHIQ
Trigger: TTGGATGTGGTGGCGCATGCCTTCGGTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACTGGTCCAAAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 90 bp AACTTGATTTTTGGACCAGTCTGGCCTGGAACTCAGAAATCTGTCTaGCTCTGCCTCCCAGGTGCATGGACCGAAGGCATGCGCCACCAC +
Preference number: 1 (lower is better)
Translates to: NLIFGPVWPGTQKSV*LCLPGAWTEGMRHH
Trigger: GTGGTGGCGCATGCCTTCGGTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACTGGTCCAAAAATCAAGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 90 bp TGCCTCTGCCTCCGGGTTTTATCCTGGAAGCTGAGAAGTCTCTTCTaGACTCCTGTCCTGTCTCCCTCAGATTCTCAGGCTGCTGAATCA +
Preference number: 1 (lower is better)
Translates to: CLCLRVLSWKLRSLF*TPVLSPSDSQAAES
Trigger: TGATTCAGCAGCCTGAGAATCTGAGGGAGACAGGACAGGAGTTCAGAAGAGACTTCTCAGCTTCCAGGATAAAACCCGGAGGCAGAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 90 bp AAACCAGCCTTTCGGAGAGCTCTTGCCCTGGCCATCTTGAATGACTaGAACTACCAGTTCTTTTGGGGCTTGTTACCAGCACGGCACAAA +
Preference number: 1 (lower is better)
Translates to: KPAFRRALALAILND*NYQFFWGLLPARHK
Trigger: TTTGTGCCGTGCTGGTAACAAGCCCCAAAAGAACTGGTAGTTGCAGTCATTCAAGATGGCCAGGGCAAGAGCTCTCCGAAAGGCTGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 90 bp CTTTGTAGAAACCAGCCTTTCGGAGAGCTCTTGCCCTGGCCATCTTaGATGACTGCAACTACCAGTTCTTTTGGGGCTTGTTACCAGCAC +
Preference number: 1 (lower is better)
Translates to: LCRNQPFGELLPWPS*MTATTSSFGACYQH
Trigger: GTGCTGGTAACAAGCCCCAAAAGAACTGGTAGTTGCAGTCATTCAAGATGGCCAGGGCAAGAGCTCTCCGAAAGGCTGGTTTCTACAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 90 bp GCTCTTGCCCTGGCCATCTTGAATGACTGCAACTACCAGTTCTTTTaGGGCTTGTTACCAGCACGGCACAAAGATAGCAGGAAACATGCT +
Preference number: 1 (lower is better)
Translates to: ALALAILNDCNYQFF*GLLPARHKDSRKHA
Trigger: AGCATGTTTCCTGCTATCTTTGTGCCGTGCTGGTAACAAGCCCCAAAAGAACTGGTAGTTGCAGTCATTCAAGATGGCCAGGGCAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 90 bp TCAGGAGTGAGTTATTCCTTAAGTAAAACATCACCCAACAATGCCTaGAAGAAAGGAAGTCTGCACGGAACCTGCATCTCCCTTCCCAGC +
Preference number: 1 (lower is better)
Translates to: SGVSYSLSKTSPNNA*KKGSLHGTCISLPS
Trigger: GCTGGGAAGGGAGATGCAGGTTCCGTGCAGACTTCCTTTCTTCCAGGCATTGTTGGGTGATGTTTTACTTAAGGAATAACTCACTCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 90 bp GGCTATCTGGGTCTGAAGGTCACAAGCGGTACCAGATCATCGAGCTaGCAATCCTATTTTAAGGTAGCTTATATATGTTCACTTGTGTGT +
Preference number: 1 (lower is better)
Translates to: GYLGLKVTSGTRSSS*QSYFKVAYICSLVC
Trigger: ACACACAAGTGAACATATATAAGCTACCTTAAAATAGGATTGGCAGCTCGATGATCTGGTACCGCTTGTGACCTTCAGACCCAGATAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 90 bp TGGGCAAAAGAACTTCTCTCCAGCTTTAAAAAGAATGTCCAAAGCTaGCATAAGGCTGGCTTGAAAGGTCATGTTCTTAGGGCTATCTGG +
Preference number: 1 (lower is better)
Translates to: WAKELLSSFKKNVQS*HKAGLKGHVLRAIW
Trigger: CCAGATAGCCCTAAGAACATGACCTTTCAAGCCAGCCTTATGGCAGCTTTGGACATTCTTTTTAAAGCTGGAGAGAAGTTCTTTTGCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CCA 90 bp GTCAGCTGGGTGGGGGAAGCTGGATGTGGCTACCACTGTGAGTCAGACCTGGCTATAGCCTACTCCAGCTaGAATGCTGCTCCTTTGGGC +
Preference number: 2 (lower is better)
Translates to: VSWVGEAGCGYHCESDLAIAYSS*NAAPLG
Trigger: GCCCAAAGGAGCAGCATTCCAGCTGGAGTAGGCTAT...AGCCAGGTCTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CCA 90 bp AGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTGCCTCCCAGGTGCATGGACACAGAGGGAGGGCCATaGACCTGGCCAGCATTTGCT +
Preference number: 2 (lower is better)
Translates to: SLAWNSEICLPLPPRCMDTEGGP*TWPAFA
Trigger: AGCAAATGCTGGCCAGGTCCATGGCCCTCCCTCTGT...GTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 90 bp GAGAGAGTCAAAAGGGAAAGCGCAGGGAAAGCTCCCGGCGCAGCGTaGCTGTGGAAGTGTCACCTACTGGGCACTGAGAAAGCACTCAAA +
Preference number: 2 (lower is better)
Translates to: ERVKRESAGKAPGAA*LWKCHLLGTEKALK
Trigger: TTTGAGTGCTTTCTCAGTGCCCAGTAGGTGACACTTCCACAGCAACGCTGCGCCGGGAGCTTTCCCTGCGCTTTCCCTTTTGACTCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 90 bp GCACCTCTCACATGGTTAGGCTATGACATCACAAAACACAGAGTCTaGAAAAGACCCACACCCAGGGCCAAGGGAAAGGCCGCGGCCTCC +
Preference number: 2 (lower is better)
Translates to: APLTWLGYDITKHRV*KRPTPRAKGKAAAS
Trigger: GGAGGCCGCGGCCTTTCCCTTGGCCCTGGGTGTGGGTCTTTTCAAGACTCTGTGTTTTGTGATGTCATAGCCTAACCATGTGAGAGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR GCA 90 bp GTGACCTTCTGGAATGTGGTTAGACAGAAGAGCAGGAGAGCACAGGGGCTGCCCACTGCACAACAGCAGTaGGTAGGTCCCAAAGACCTT +
Preference number: 2 (lower is better)
Translates to: VTFWNVVRQKSRRAQGLPTAQQQ*VGPKDL
Trigger: AAGGTCTTTGGGACCTACGCACTGCTGTTGTGCAGT...GGGCAGCCCCTGTGCTCTCCTGCTCTTCTGTCTAACCACATTCCAGAAGGTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CCA 90 bp ATGAGAGAAAATACTGCCGATTTGGGGGTTCCAGGGTTGATTAGTGTGACTGCATGGTGGTCAGCTGGGTaGGGGAAGCTGGATGTGGCT +
Preference number: 2 (lower is better)
Translates to: MRENTADLGVPGLISVTAWWSAG*GKLDVA
Trigger: AGCCACATCCAGCTTCCCCCACCCAGCTGACCACCA...TGCAGTCACACTAATCAACCCTGGAACCCCCAAATCGGCAGTATTTTCTCTCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 90 bp CTAGCCCAGGACACCCCCAAACGATACTTATATCAATTGCAAGAGTaGCTAGGGATAGCCCTTTCTCCTCTGCTGCTCTCCCTTGTGAAC +
Preference number: 2 (lower is better)
Translates to: LAQDTPKRYLYQLQE*LGIALSPLLLSLVN
Trigger: GTTCACAAGGGAGAGCAGCAGAGGAGAAAGGGCTATCCCTAGCAACTCTTGCAATTGATATAAGTATCGTTTGGGGGTGTCCTGGGCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 90 bp AGCCAATACCTAGCCCAGGACACCCCCAAACGATACTTATATCAATaGCAAGAGTTGCTAGGGATAGCCCTTTCTCCTCTGCTGCTCTCC +
Preference number: 2 (lower is better)
Translates to: SQYLAQDTPKRYLYQ*QELLGIALSPLLLS
Trigger: GGAGAGCAGCAGAGGAGAAAGGGCTATCCCTAGCAACTCTTGCAATTGATATAAGTATCGTTTGGGGGTGTCCTGGGCTAGGTATTGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 90 bp GGGTCAGCAGTAGACACCTTCAAGGGTACTGGGGATCAGTTGCTTTaGCAGGCAGAACTGTCTCAGTATAGGGCTTTACCAAAGGAGATC +
Preference number: 2 (lower is better)
Translates to: GSAVDTFKGTGDQLL*QAELSQYRALPKEI
Trigger: GATCTCCTTTGGTAAAGCCCTATACTGAGACAGTTCTGCCTGCAAAAGCAACTGATCCCCAGTACCCTTGAAGGTGTCTACTGCTGACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR TCA 90 bp TTGCTTTTGCAGGCAGAACTGTCTCAGTATAGGGCTTTACCAAAGGAGATCAGCGAAGGGGACTGGAGGTaGGAAGATTGTGGCAAGGTC +
Preference number: 2 (lower is better)
Translates to: LLLQAELSQYRALPKEISEGDWR*EDCGKV
Trigger: GACCTTGCCACAATCTTCTCACCTCCAGTCCCCTTC...GCTGATCTCCTTTGGTAAAGCCCTATACTGAGACAGTTCTGCCTGCAAAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR TCA 90 bp TATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTGCCGATGGGGCCACCCACTCTaGGGACAAAGGCCTTACTCC +
Preference number: 2 (lower is better)
Translates to: YMFTCVSTIPSQRKSWCRWGHPL*GQRPYS
Trigger: GGAGTAAGGCCTTTGTCCTCAGAGTGGGTGGCCCCA...TCGGCACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 90 bp GGCTATCGTGAGGACATAGCCTACTCCAGCTGGAATGCTGCTCCTTaGGGCTTTAGTCACTTCATCTACTCAACAGGCTTAAGGGAAGAA +
Preference number: 2 (lower is better)
Translates to: GYREDIAYSSWNAAP*GFSHFIYSTGLREE
Trigger: TTCTTCCCTTAAGCCTGTTGAGTAGATGAAGTGACTAAAGCCCAAAGGAGCAGCATTCCAGCTGGAGTAGGCTATGTCCTCACGATAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CCA 90 bp CCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGCATGTCGGAAGTGTCACCTACTaGGCACTGAGAAAGCACTCA +
Preference number: 2 (lower is better)
Translates to: PCPHLSMGLFVVYFPQHVGSVTY*ALRKHS
Trigger: TGAGTGCTTTCTCAGTGCCCAGTAGGTGACACTTCC...GACATGCTGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CCA 90 bp TGTGTGGTAGTGGGAAGCCAGGTTTCCTTTAGAGCTCACCAATCAGCAGATTCCTCTCAAAGAAAATCCTaGTGCCGAGAGCCCAGTCTA +
Preference number: 2 (lower is better)
Translates to: CVVVGSQVSFRAHQSADSSQRKS*CREPSL
Trigger: TAGACTGGGCTCTCGGCACCAGGATTTTCTTTGAGA...GGAATCTGCTGATTGGTGAGCTCTAAAGGAAACCTGGCTTCCCACTACCACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR TCA 90 bp CTTTTGCAGGCAGAACTGTCTCAGTATAGGGCTTTACCAAAGGAGATCAGCTGTGCCATAAGGCTGGCTTaGAAGGTCATGTTCTTAGGG +
Preference number: 2 (lower is better)
Translates to: LLQAELSQYRALPKEISCAIRLA*KVMFLG
Trigger: CCCTAAGAACATGACCTTTCAAGCCAGCCTTATGGC...ACAGCTGATCTCCTTTGGTAAAGCCCTATACTGAGACAGTTCTGCCTGCAAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR GCA 90 bp GCTTATATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTCCCAAAGACCTTGCTTaGGGAGCCCTGGAAGGGGAC +
Preference number: 2 (lower is better)
Translates to: AYICSLVCPQSHLKENPGPKDLA*GALEGD
Trigger: GTCCCCTTCCAGGGCTCCGCAAGCAAGGTCTTTGGG...ACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATATAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CCA 90 bp GCTTATATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTTTGCTTGCGGAGCCCTaGAAGGGGACTGGAGGTGAG +
Preference number: 2 (lower is better)
Translates to: AYICSLVCPQSHLKENPGLLAEP*KGTGGE
Trigger: CTCACCTCCAGTCCCCTTCCAGGGCTCCGCAAGCAA...ACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATATAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR TCA 90 bp ATTTCAGGAGTGAGTTATTCCTTAAGTAAAACATCACCCAACAATGCCTGGAAGCCACATTGCCAGAGCTaGGCTGCCTATACCTTCTCA +
Preference number: 2 (lower is better)
Translates to: ISGVSYSLSKTSPNNAWKPHCQS*AAYTFS
Trigger: TGAGAAGGTATAGGCAGCTCAGCTCTGGCAATGTGG...CTTCCAGGCATTGTTGGGTGATGTTTTACTTAAGGAATAACTCACTCCTGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR GCA 90 bp TGTGTGGTAGTGGGAAGCCAGGTTTCCTTTAGAGCTCACCAATCAGCAGATTCCATTTGCTTCAGTTACTaGTTAGTGACTGTAATGGTG +
Preference number: 2 (lower is better)
Translates to: CVVVGSQVSFRAHQSADSICFSY*LVTVMV
Trigger: CACCATTACAGTCACTAAGCAGTAACTGAAGCAAAT...GGAATCTGCTGATTGGTGAGCTCTAAAGGAAACCTGGCTTCCCACTACCACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR TCA 90 bp TATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTGCCGATTTTATCCTGGAAGCTaGGAAGTCTCTTCTGAACTC +
Preference number: 2 (lower is better)
Translates to: YMFTCVSTIPSQRKSWCRFYPGS*EVSSEL
Trigger: GAGTTCAGAAGAGACTTCTCAGCTTCCAGGATAAAA...TCGGCACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR GCA 90 bp TATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTGCCGATACCTTCTCATCTGCTaGAAAATGTGCAAGGAACAT +
Preference number: 2 (lower is better)
Translates to: YMFTCVSTIPSQRKSWCRYLLIC*KMCKEH
Trigger: ATGTTCCTTGCACATTTTGCAGCAGATGAGAAGGTA...TCGGCACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CCA 90 bp CCATTTAAAAATGAGGAAATGAACTATGTTTACCATACAGCACACAAAGGCCTGCTCCGGGTTTTATCCTaGAAGCTGAGAAGTCTCTTC +
Preference number: 2 (lower is better)
Translates to: PFKNEEMNYVYHTAHKGLLRVLS*KLRSLF
Trigger: GAAGAGACTTCTCAGCTTCCAGGATAAAACCCGGAG...CAGGCCTTTGTGTGCTGTATGGTAAACATAGTTCATTTCCTCATTTTTAAATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CCA 90 bp ATTTCAGGAGTGAGTTATTCCTTAAGTAAAACATCACCCAACAATGCCTGGAAGGTAATGGTGACCTTCTaGAATGTGGTTAGACAGAAG +
Preference number: 2 (lower is better)
Translates to: ISGVSYSLSKTSPNNAWKVMVTF*NVVRQK
Trigger: CTTCTGTCTAACCACATTCCAGAAGGTCACCATTAC...CTTCCAGGCATTGTTGGGTGATGTTTTACTTAAGGAATAACTCACTCCTGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 72 bp CAGCTGGGTGGGGGAAGCTGGATGTGGCTACCACTGTaGGTCAGACCTGGCTGGGCTGGCTGTCACTGTCCC +
Preference number: 3 (lower is better)
Translates to: QLGGGSWMWLPL*VRPGWAGCHCP
Trigger: GGGACAGTGACAGCCAGCCCAGCCAGGTCTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 72 bp CAGGGCCAAGGGAAAGGCCGCGGCCTCCAAGTTCTCTaGAGAGGTTGGAAGAGGAGCCCGTGGTGGTCAGCT +
Preference number: 3 (lower is better)
Translates to: QGQGKGRGLQVL*RGWKRSPWWSA
Trigger: AGCTGACCACCACGGGCTCCTCTTCCAACCTCTTCAGAGAACTTGGAGGCCGCGGCCTTTCCCTTGGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp CCAGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTaGCTCCCAGGTGCATGGACCGAAGGCATGCGCCAC +
Preference number: 3 (lower is better)
Translates to: PVWPGTQKSVCL*LPGAWTEGMRH
Trigger: GTGGCGCATGCCTTCGGTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 72 bp AGAGGTTGGAAGAGGAGCCCGTGGTGGTCAGCTGGGTaGGGGAAGCTGGATGTGGCTACCACTGTGAGTCAG +
Preference number: 3 (lower is better)
Translates to: RGWKRSPWWSAG*GKLDVATTVSQ
Trigger: CTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTGACCACCACGGGCTCCTCTTCCAACCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 72 bp CTGAAGAGGTTGGAAGAGGAGCCCGTGGTGGTCAGCTaGGTGGGGGAAGCTGGATGTGGCTACCACTGTGAG +
Preference number: 3 (lower is better)
Translates to: LKRLEEEPVVVS*VGEAGCGYHCE
Trigger: CTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTGACCACCACGGGCTCCTCTTCCAACCTCTTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp AACTGCACAACAGCAGTGCGTAGGTCCCAAAGACCTTaGTTGCGGAGCCCTGGAAGGGGACTGGAGGTGAGA +
Preference number: 3 (lower is better)
Translates to: NCTTAVRRSQRP*LRSPGRGLEVR
Trigger: TCTCACCTCCAGTCCCCTTCCAGGGCTCCGCAAGCAAGGTCTTTGGGACCTACGCACTGCTGTTGTGCAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp CGACCAGAAGAGAAGCCTGGAACTGCACAACAGCAGTaGGTAGGTCCCAAAGACCTTGCTTGCGGAGCCCTG +
Preference number: 3 (lower is better)
Translates to: RPEEKPGTAQQQ*VGPKDLACGAL
Trigger: CAGGGCTCCGCAAGCAAGGTCTTTGGGACCTACGCACTGCTGTTGTGCAGTTCCAGGCTTCTCTTCTGGTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CAA 90 bp AGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTGCCTCCCAGGTGCATGGACAGTTCTCTGAAGAGGTaGGAAGAGGAGCCCGTGGTG +
Preference number: 3 (lower is better)
Translates to: SLAWNSEICLPLPPRCMDSSLKR*EEEPVV
Trigger: CACCACGGGCTCCTCTTCCAACCTCTTCAGAGAACT...GTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp TGGAACTCAGAAATCTGTCTGCCTCTGCCTCCCAGGTaGATGGACCGAAGGCATGCGCCACCACATCCAACT +
Preference number: 3 (lower is better)
Translates to: WNSEICLPLPPR*MDRRHAPPHPT
Trigger: AGTTGGATGTGGTGGCGCATGCCTTCGGTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp TTTGGACCAGTCTGGCCTGGAACTCAGAAATCTGTCTaGCTCTGCCTCCCAGGTGCATGGACCGAAGGCATG +
Preference number: 3 (lower is better)
Translates to: FGPVWPGTQKSV*LCLPGAWTEGM
Trigger: CATGCCTTCGGTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACTGGTCCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 72 bp CTCCCGGCGCAGCGTTGCTGTGGAAGTGTCACCTACTaGGCACTGAGAAAGCACTCAAAGCCATCAAAGCCA +
Preference number: 3 (lower is better)
Translates to: LPAQRCCGSVTY*ALRKHSKPSKP
Trigger: TGGCTTTGATGGCTTTGAGTGCTTTCTCAGTGCCCAGTAGGTGACACTTCCACAGCAACGCTGCGCCGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp TCTGCCTCTGCCTCCCAGGTGCATGGACCGAAGGCATaGGCCACCACATCCAACTATAGCCATGGGTTTTAT +
Preference number: 3 (lower is better)
Translates to: SASASQVHGPKA*ATTSNYSHGFY
Trigger: ATAAAACCCATGGCTATAGTTGGATGTGGTGGCGCATGCCTTCGGTCCATGCACCTGGGAGGCAGAGGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CAA 90 bp CAGAGCCTGTTCCATCTTGGGGCCACCCACTCTGAGGACAAAGGCCTTACTCCTCTGGAGGTGAGAAGATaGTGGCAAGGTCATCTCATC +
Preference number: 3 (lower is better)
Translates to: QSLFHLGATHSEDKGLTPLEVRR*WQGHLI
Trigger: GATGAGATGACCTTGCCACAATCTTCTCACCTCCAG...AGGAGTAAGGCCTTTGTCCTCAGAGTGGGTGGCCCCAAGATGGAACAGGCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp GGTTACCAGCATTCGACCAGAAGAGAAGCCTGGAACTaGACAACAGCAGTGCGTAGGTCCCAAAGACCTTGC +
Preference number: 3 (lower is better)
Translates to: GYQHSTRREAWN*TTAVRRSQRPC
Trigger: GCAAGGTCTTTGGGACCTACGCACTGCTGTTGTGCAGTTCCAGGCTTCTCTTCTGGTCGAATGCTGGTAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 72 bp TGGCAAGGTCATCTCATCTGTAAAACGGGGCTATCGTaGGGACATAGCCTACTCCAGCTGGAATGCTGCTCC +
Preference number: 3 (lower is better)
Translates to: WQGHLICKTGLS*GHSLLQLECCS
Trigger: GGAGCAGCATTCCAGCTGGAGTAGGCTATGTCCTCACGATAGCCCCGTTTTACAGATGAGATGACCTTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 72 bp GACCTTGCTTGCGGAGCCCTGGAAGGGGACTGGAGGTaGGAAGATTGTGGCAAGGTCATCTCATCTGTAAAA +
Preference number: 3 (lower is better)
Translates to: DLACGALEGDWR*EDCGKVISSVK
Trigger: TTTTACAGATGAGATGACCTTGCCACAATCTTCTCACCTCCAGTCCCCTTCCAGGGCTCCGCAAGCAAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp AAACATCACCCAACAATGCCTGGAAGAAAGGAAGTCTaGACGGAACCTGCATCTCCCTTCCCAGCACGGCAT +
Preference number: 3 (lower is better)
Translates to: KHHPTMPGRKEV*TEPASPFPARH
Trigger: ATGCCGTGCTGGGAAGGGAGATGCAGGTTCCGTGCAGACTTCCTTTCTTCCAGGCATTGTTGGGTGATGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 72 bp GCTCAAGGTTACCAGCATTCGACCAGAAGAGAAGCCTaGAACTGCACAACAGCAGTGCGTAGGTCCCAAAGA +
Preference number: 3 (lower is better)
Translates to: AQGYQHSTRREA*NCTTAVRRSQR
Trigger: TCTTTGGGACCTACGCACTGCTGTTGTGCAGTTCCAGGCTTCTCTTCTGGTCGAATGCTGGTAACCTTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp AGGGCCATGGACCTGGCCAGCATTTGCTTCAGTTACTaGTTAGTGACTGTAATGGTGACCTTCTGGAATGTG +
Preference number: 3 (lower is better)
Translates to: RAMDLASICFSY*LVTVMVTFWNV
Trigger: CACATTCCAGAAGGTCACCATTACAGTCACTAAGCAGTAACTGAAGCAAATGCTGGCCAGGTCCATGGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp TTTCGGAGAGCTCTTGCCCTGGCCATCTTGAATGACTaGAACTACCAGTTCTTTTGGGGCTTGTTACCAGCA +
Preference number: 3 (lower is better)
Translates to: FRRALALAILND*NYQFFWGLLPA
Trigger: TGCTGGTAACAAGCCCCAAAAGAACTGGTAGTTGCAGTCATTCAAGATGGCCAGGGCAAGAGCTCTCCGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 72 bp ATACCTTCTCATCTGCTGCAAAATGTGCAAGGAACATaGGGACTAGAAGTAGCTACAGAGGGAGGGCCATGG +
Preference number: 3 (lower is better)
Translates to: IPSHLLQNVQGT*GLEVATEGGPW
Trigger: CCATGGCCCTCCCTCTGTAGCTACTTCTAGTCCCCATGTTCCTTGCACATTTTGCAGCAGATGAGAAGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 72 bp CTGGCCATCTTGAATGACTGCAACTACCAGTTCTTTTaGGGCTTGTTACCAGCACGGCACAAAGATAGCAGG +
Preference number: 3 (lower is better)
Translates to: LAILNDCNYQFF*GLLPARHKDSR
Trigger: CCTGCTATCTTTGTGCCGTGCTGGTAACAAGCCCCAAAAGAACTGGTAGTTGCAGTCATTCAAGATGGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp GGTTTAAAGAGACCTAGTTCCGATCTCACCTCCATATaGCAGATACCCAACCCTGACCAAATCCCAAATCGC +
Preference number: 3 (lower is better)
Translates to: GLKRPSSDLTSI*QIPNPDQIPNR
Trigger: GCGATTTGGGATTTGGTCAGGGTTGGGTATCTGGCATATGGAGGTGAGATCGGAACTAGGTCTCTTTAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CAA 90 bp TTCCTATCCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACATGCCATAAGGCTGGCTaGAAAGGTCATGTTCTTAGG +
Preference number: 3 (lower is better)
Translates to: FLSLSSPVNGPLCSLLSTCHKAG*KGHVLR
Trigger: CCTAAGAACATGACCTTTCAAGCCAGCCTTATGGCA...TGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGGATAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CAA 90 bp TGTGTGGTAGTGGGAAGCCAGGTTTCCTTTAGAGCTCACCAATCAGCAGATTCCGGACCTGTATTTTCTTaGGTAAAACAAAGAGATGGG +
Preference number: 3 (lower is better)
Translates to: CVVVGSQVSFRAHQSADSGPVFS*VKQRDG
Trigger: CCCATCTCTTTGTTTTACCAAAGAAAATACAGGTCC...GGAATCTGCTGATTGGTGAGCTCTAAAGGAAACCTGGCTTCCCACTACCACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 72 bp TGTAGTTGCCTGAGCACCTCTCACATGGTTAGGCTATaGCATCACAAAACACAGAGTCTTGAAAAGACCCAC +
Preference number: 3 (lower is better)
Translates to: CSCLSTSHMVRL*HHKTQSLEKTH
Trigger: GTGGGTCTTTTCAAGACTCTGTGTTTTGTGATGTCATAGCCTAACCATGTGAGAGGTGCTCAGGCAACTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 72 bp TTCCGATCTCACCTCCATATGCCAGATACCCAACCCTaGCCAAATCCCAAATCGCTCAACTTCATAACCTAT +
Preference number: 3 (lower is better)
Translates to: FRSHLHMPDTQP*PNPKSLNFITY
Trigger: ATAGGTTATGAAGTTGAGCGATTTGGGATTTGGTCAGGGTTGGGTATCTGGCATATGGAGGTGAGATCGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR TCA 72 bp GATTTGGAAACCTGGCTCTTCCATTACCAGCCTATGTaGCAAGTAAGTTACCTGGGATTCAGTCTGACCATT +
Preference number: 3 (lower is better)
Translates to: DLETWLFHYQPM*QVSYLGFSLTI
Trigger: AATGGTCAGACTGAATCCCAGGTAACTTACTTGTCACATAGGCTGGTAATGGAAGAGCCAGGTTTCCAAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp TCAGCAGATTCCATCTCCTTAGCACAGCCCCTTGCCTaGTTCTCATCACCAACAGGACAAAATCTAATTAAA +
Preference number: 3 (lower is better)
Translates to: SADSISLAQPLA*FSSPTGQNLIK
Trigger: TTTAATTAGATTTTGTCCTGTTGGTGATGAGAAGCAGGCAAGGGGCTGTGCTAAGGAGATGGAATCTGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CCA 72 bp AGTTATTCCTTAAGTAAAACATCACCCAACAATGCCTaGAAGAAAGGAAGTCTGCACGGAACCTGCATCTCC +
Preference number: 3 (lower is better)
Translates to: SYSLSKTSPNNA*KKGSLHGTCIS
Trigger: GGAGATGCAGGTTCCGTGCAGACTTCCTTTCTTCCAGGCATTGTTGGGTGATGTTTTACTTAAGGAATAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp GGTCTGAAGGTCACAAGCGGTACCAGATCATCGAGCTaGCAATCCTATTTTAAGGTAGCTTATATATGTTCA +
Preference number: 3 (lower is better)
Translates to: GLKVTSGTRSSS*QSYFKVAYICS
Trigger: TGAACATATATAAGCTACCTTAAAATAGGATTGGCAGCTCGATGATCTGGTACCGCTTGTGACCTTCAGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR GCA 72 bp GAACTTCTCTCCAGCTTTAAAAAGAATGTCCAAAGCTaGCATAAGGCTGGCTTGAAAGGTCATGTTCTTAGG +
Preference number: 3 (lower is better)
Translates to: ELLSSFKKNVQS*HKAGLKGHVLR
Trigger: CCTAAGAACATGACCTTTCAAGCCAGCCTTATGGCAGCTTTGGACATTCTTTTTAAAGCTGGAGAGAAGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CAA 90 bp ATGAGAGAAAATACTGCCGATTTGGGGGTTCCAGGGTTGATTAGTGTGACTGCACGTGTCAGAAATTCCTaGGCTCTGTTAATTTATACA +
Preference number: 3 (lower is better)
Translates to: MRENTADLGVPGLISVTARVRNS*ALLIYT
Trigger: TGTATAAATTAACAGAGCCAAGGAATTTCTGACACG...TGCAGTCACACTAATCAACCCTGGAACCCCCAAATCGGCAGTATTTTCTCTCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR-3UTR CAA 90 bp TTCCTATCCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACACGATACTTATATCAATaGCAAGAGTTGCTAGGGATA +
Preference number: 3 (lower is better)
Translates to: FLSLSSPVNGPLCSLLSTRYLYQ*QELLGI
Trigger: TATCCCTAGCAACTCTTGCAATTGATATAAGTATCG...TGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGGATAGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp TCCCAAAGACCTTGCTTGCGGAGCCCTGGAAGGGGACTGGAGGTGAGAAGATTGCGGTGCAGGAGCACCTaGAGTCAGCCCCGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: SQRPCLRSPGRGLEVRRLRCRST*SQPRSS
Trigger: TGAGCTCCGGGGCTGACTGCAGGTGCTCCTGCACCG...CAATCTTCTCACCTCCAGTCCCCTTCCAGGGCTCCGCAAGCAAGGTCTTTGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp ACAATCCCATCTCAAAGAAAATCCTGGTGCCGAGAGCCCAGTCTACCCTCCCCTCTGAGCCAGCGCACGTaGCCTGGCTGTGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: TIPSQRKSWCREPSLPSPLSQRT*PGCGLG
Trigger: CCCCAGCCCACAGCCAGGCCACGTGCGCTGGCTCAG...AGGGGAGGGTAGACTGGGCTCTCGGCACCAGGATTTTCTTTGAGATGGGATTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp GTGGTGGTCAGCTGGGTGGGGGAAGCTGGATGTGGCTACCACTGTGAGTCAGACGCCGTGTCTTCCACGTaGTCTCCCGGTGCACAGAGA +
Preference number: 4 (lower is better)
Translates to: VVVSWVGEAGCGYHCESDAVSST*SPGAQR
Trigger: TCTCTGTGCACCGGGAGACCACGTGGAAGACACGGC...GTCTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTGACCACCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp CAGAGCCTGTTCCATCTTGGGGCCACCCACTCTGAGGACAAAGGCCTTACTCCTCACGTGGTCTCCCGGTaGACAGAGAGGTCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: QSLFHLGATHSEDKGLTPHVVSR*TERSAG
Trigger: CCCAGCAGACCTCTCTGTGCACCGGGAGACCACGTG...AGGAGTAAGGCCTTTGTCCTCAGAGTGGGTGGCCCCAAGATGGAACAGGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp CAGAGCCTGTTCCATCTTGGGGCCACCCACTCTGAGGACAAAGGCCTTACTCCTTTGAGGCTGGGGCAGTaGCAGGGACAGCGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: QSLFHLGATHSEDKGLTPLRLGQ*QGQRLH
Trigger: ATGCAGCCGCTGTCCCTGCCACTGCCCCAGCCTCAA...AGGAGTAAGGCCTTTGTCCTCAGAGTGGGTGGCCCCAAGATGGAACAGGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp TCCCAAAGACCTTGCTTGCGGAGCCCTGGAAGGGGACTGGAGGTGAGAAGATTGTGGGTGCCTCCTGTCTaGCCTCCTGTCTGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: SQRPCLRSPGRGLEVRRLWVPPV*PPVWPP
Trigger: AGGAGGCCAGACAGGAGGCCAGACAGGAGGCACCCA...CAATCTTCTCACCTCCAGTCCCCTTCCAGGGCTCCGCAAGCAAGGTCTTTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp AGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTGCCTCCCAGGTGCATGGACTGTCAGCGGCAGCCTTaGGTGCCTCCTGTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: SLAWNSEICLPLPPRCMDCQRQP*VPPVWP
Trigger: AGGCCAGACAGGAGGCACCCAAGGCTGCCGCTGACA...GTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp GTGGTGGTCAGCTGGGTGGGGGAAGCTGGATGTGGCTACCACTGTGAGTCAGACGGGGTATTCTGCCCTTaGTGCTCTCCTTCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: VVVSWVGEAGCGYHCESDGVFCP*CSPSSA
Trigger: AGCTGAGGAAGGAGAGCATCAAGGGCAGAATACCCC...GTCTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTGACCACCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp GTGACCTTCTGGAATGTGGTTAGACAGAAGAGCAGGAGAGCACAGGGGCTGCCCGGCTCAGGTTGGCCTTaGTGCTCTCCTCCAGCGTAT +
Preference number: 4 (lower is better)
Translates to: VTFWNVVRQKSRRAQGLPGSGWP*CSPPAY
Trigger: ATACGCTGGAGGAGAGCATCAAGGCCAACCTGAGCC...GGGCAGCCCCTGTGCTCTCCTGCTCTTCTGTCTAACCACATTCCAGAAGGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp CAGAGCCTGTTCCATCTTGGGGCCACCCACTCTGAGGACAAAGGCCTTACTCCTGGCCTCCTGTCTGCCTaGCTTGTAGTAGGTGAAGCC +
Preference number: 4 (lower is better)
Translates to: QSLFHLGATHSEDKGLTPGLLSA*LVVGEA
Trigger: GGCTTCACCTACTACAAGGCAGGCAGACAGGAGGCC...AGGAGTAAGGCCTTTGTCCTCAGAGTGGGTGGCCCCAAGATGGAACAGGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp GTGGTGGTCAGCTGGGTGGGGGAAGCTGGATGTGGCTACCACTGTGAGTCAGACCCCTGGTACACAACATaGCCTGTGCCTATCCAGTTG +
Preference number: 4 (lower is better)
Translates to: VVVSWVGEAGCGYHCESDPWYTT*PVPIQL
Trigger: CAACTGGATAGGCACAGGCCATGTTGTGTACCAGGG...GTCTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTGACCACCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp AGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTGCCTCCCAGGTGCATGGACAGTGGAGAGTGTAAGTaGGCTGGTGGCCATTGTCCC +
Preference number: 4 (lower is better)
Translates to: SLAWNSEICLPLPPRCMDSGECK*AGGHCP
Trigger: GGGACAATGGCCACCAGCTCACTTACACTCTCCACT...GTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp ACAATCCCATCTCAAAGAAAATCCTGGTGCCGAGAGCCCAGTCTACCCTCCCCTCACTTCGCACCCGGCTaGATGCATCCTTGCTCAGCG +
Preference number: 4 (lower is better)
Translates to: TIPSQRKSWCREPSLPSPHFAPG*MHPCSA
Trigger: CGCTGAGCAAGGATGCATGCAGCCGGGTGCGAAGTG...AGGGGAGGGTAGACTGGGCTCTCGGCACCAGGATTTTCTTTGAGATGGGATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp TGTGTGGTAGTGGGAAGCCAGGTTTCCTTTAGAGCTCACCAATCAGCAGATTCCGCGGCTGCATCCCTCTaGAGCAACTGGAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: CVVVGSQVSFRAHQSADSAAASL*SNWRPR
Trigger: CCTGGGCCTCCAGTTGCTGCAGAGGGATGCAGCCGC...GGAATCTGCTGATTGGTGAGCTCTAAAGGAAACCTGGCTTCCCACTACCACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp AGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTGCCTCCCAGGTGCATGGACCTGGGGACTTCTGGATaGAAAGGTGGCTCAGTAGGC +
Preference number: 4 (lower is better)
Translates to: SLAWNSEICLPLPPRCMDLGTSG*KGGSVG
Trigger: GCCTACTGAGCCACCTTTGCATCCAGAAGTCCCCAG...GTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp GTGAACAGAATAGCGTTGAAGGCCCAGAAAATACCCCAGGCCCAAGGCTTTGAGGTGCACAGAGAGGTCTaGTGGGTCCAGGCGGCTCAA +
Preference number: 4 (lower is better)
Translates to: VNRIALKAQKIPQAQGFEVHREV*WVQAAQ
Trigger: TTGAGCCGCCTGGACCCAGCAGACCTCTCTGTGCAC...CTCAAAGCCTTGGGCCTGGGGTATTTTCTGGGCCTTCAACGCTATTCTGTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp TTCCTATCCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACACTCACAGGGGTTGAGTaGGGAGGGCGGGGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: FLSLSSPVNGPLCSLLSTLTGVE*GGRGGA
Trigger: TGCACCGCCCCGCCCTCCTCACTCAACCCCTGTGAG...TGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGGATAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp AGTCTGGCCTGGAACTCAGAAATCTGTCTGCCTCTGCCTCCCAGGTGCATGGACTGCTGCCATATTTGTTaGGATCTCTGCCTTGCCCTC +
Preference number: 4 (lower is better)
Translates to: SLAWNSEICLPLPPRCMDCCHIC*DLCLAL
Trigger: GAGGGCAAGGCAGAGATCTCAACAAATATGGCAGCA...GTCCATGCACCTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCCAGGCCAGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp GTGGTGGTCAGCTGGGTGGGGGAAGCTGGATGTGGCTACCACTGTGAGTCAGACTATAGGAATACTCATTaGGGAAGGGCAACTGTGGGT +
Preference number: 4 (lower is better)
Translates to: VVVSWVGEAGCGYHCESDYRNTH*GRATVG
Trigger: ACCCACAGTTGCCCTTCCTCAATGAGTATTCCTATA...GTCTGACTCACAGTGGTAGCCACATCCAGCTTCCCCCACCCAGCTGACCACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp CCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGCATGTCGAAGCCTCGGATCACTaGCTGCTGCTGAGCCAGCGC +
Preference number: 4 (lower is better)
Translates to: PCPHLSMGLFVVYFPQHVEASDH*LLLSQR
Trigger: GCGCTGGCTCAGCAGCAGGCAGTGATCCGAGGCTTC...GACATGCTGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp CTTTTGCAGGCAGAACTGTCTCAGTATAGGGCTTTACCAAAGGAGATCAGCTGTAGCGGCAGCCTTGGGTaGCTCCTGTCTGGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: LLQAELSQYRALPKEISCSGSLG*LLSGLL
Trigger: CAGGAGGCCAGACAGGAGGCACCCAAGGCTGCCGCT...ACAGCTGATCTCCTTTGGTAAAGCCCTATACTGAGACAGTTCTGCCTGCAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp ATGAGAGAAAATACTGCCGATTTGGGGGTTCCAGGGTTGATTAGTGTGACTGCACCAGCGCACGTGGCCTaGCTGTGGGCTGGGGTATTC +
Preference number: 4 (lower is better)
Translates to: MRENTADLGVPGLISVTAPAHVA*LWAGVF
Trigger: GAATACCCCAGCCCACAGCCAGGCCACGTGCGCTGG...TGCAGTCACACTAATCAACCCTGGAACCCCCAAATCGGCAGTATTTTCTCTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp ACAATCCCATCTCAAAGAAAATCCTGGTGCCGAGAGCCCAGTCTACCCTCCCCTTGCCAGGCCCTTGTCTaGGAAGCTCTTCTGTATGCT +
Preference number: 4 (lower is better)
Translates to: TIPSQRKSWCREPSLPSPCQALV*EALLYA
Trigger: AGCATACAGAAGAGCTTCTCAGACAAGGGCCTGGCA...AGGGGAGGGTAGACTGGGCTCTCGGCACCAGGATTTTCTTTGAGATGGGATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp CCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGCATGTCTCCCTCTGCAGCAACTaGAGGCCCAGGCTAGACAGC +
Preference number: 4 (lower is better)
Translates to: PCPHLSMGLFVVYFPQHVSLCSN*RPRLDS
Trigger: GCTGTCTAGCCTGGGCCTCCAGTTGCTGCAGAGGGA...GACATGCTGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp ATGAGAGAAAATACTGCCGATTTGGGGGTTCCAGGGTTGATTAGTGTGACTGCAGGCCTGGCTGTGGGCTaGGGTATTCTGCCCTTGATG +
Preference number: 4 (lower is better)
Translates to: MRENTADLGVPGLISVTAGLAVG*GILPLM
Trigger: CATCAAGGGCAGAATACCCCAGCCCACAGCCAGGCC...TGCAGTCACACTAATCAACCCTGGAACCCCCAAATCGGCAGTATTTTCTCTCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp TATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTGCCGACCTCCAGCTGTGTCCTaGGCCTTGCTGTCGGGGCTT +
Preference number: 4 (lower is better)
Translates to: YMFTCVSTIPSQRKSWCRPPAVS*ALLSGL
Trigger: AAGCCCCGACAGCAAGGCTCAGGACACAGCTGGAGG...TCGGCACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp CCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGCATGTCGAGGAAGGGCAACTGTaGGTGAGCATCAGTGCCAGT +
Preference number: 4 (lower is better)
Translates to: PCPHLSMGLFVVYFPQHVEEGQL*VSISAS
Trigger: ACTGGCACTGATGCTCACCCACAGTTGCCCTTCCTC...GACATGCTGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp TTGCTTTTGCAGGCAGAACTGTCTCAGTATAGGGCTTTACCAAAGGAGATCAGCCTGCCTTGTAGTAGGTaGAGCCTCGGATCACTGCCT +
Preference number: 4 (lower is better)
Translates to: LLLQAELSQYRALPKEISLPCSR*SLGSLP
Trigger: AGGCAGTGATCCGAGGCTTCACCTACTACAAGGCAG...GCTGATCTCCTTTGGTAAAGCCCTATACTGAGACAGTTCTGCCTGCAAAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp TATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTGCCGACCACAGCTGGGTAGATaGCCCACAGGCCGCTCTCAT +
Preference number: 4 (lower is better)
Translates to: YMFTCVSTIPSQRKSWCRPQLGR*PTGRSH
Trigger: ATGAGAGCGGCCTGTGGGTCATCTACCCAGCTGTGG...TCGGCACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp TTCCTATCCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAAAGGGCAACTGTGGGTaGGCATCAGTGCCAGTGTGG +
Preference number: 4 (lower is better)
Translates to: FLSLSSPVNGPLCSLLSTKGNCG*ASVPVW
Trigger: CCACACTGGCACTGATGCTCACCCACAGTTGCCCTT...TGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGGATAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp TTATATCAATTGCAAGAGTTGCTAGGGATAGCCCTTTCTCCTCTGCTGCTCTCCCCTCCTTCTGAAGCCTaGAGCCGGACGTCATCATGT +
Preference number: 4 (lower is better)
Translates to: LYQLQELLGIALSPLLLSPPSEA*SRTSSC
Trigger: ACATGATGACGTCCGGCTGCAGGCTTCAGAAGGAGG...GGAGAGCAGCAGAGGAGAAAGGGCTATCCCTAGCAACTCTTGCAATTGATATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp TTCCTATCCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGTGGGTGAGCATCAGTaGCAGTGTGGGTGTCGAACG +
Preference number: 4 (lower is better)
Translates to: FLSLSSPVNGPLCSLLSTVGEHQ*QCGCRT
Trigger: CGTTCGACACCCACACTGGCACTGATGCTCACCCAC...TGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGGATAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 72 bp ATTAAGATCAACAAAGGAGACAGAGCCTGTTCCATCTaGGGGCCACCCACTCTGAGGACAAAGGCCTTACTC +
Preference number: 4 (lower is better)
Translates to: IKINKGDRACSI*GPPTLRTKALL
Trigger: GAGTAAGGCCTTTGTCCTCAGAGTGGGTGGCCCCAAGATGGAACAGGCTCTGTCTCCTTTGTTGATCTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 72 bp TCAGCAGTAGACACCTTCAAGGGTACTGGGGATCAGTaGCTTTTGCAGGCAGAACTGTCTCAGTATAGGGCT +
Preference number: 4 (lower is better)
Translates to: SAVDTFKGTGDQ*LLQAELSQYRA
Trigger: AGCCCTATACTGAGACAGTTCTGCCTGCAAAAGCAACTGATCCCCAGTACCCTTGAAGGTGTCTACTGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp GCCAGAGCTGAGCTGCCTATACCTTCTCATCTGCTGCAAAATGTGCAAGGAACAACACAACATGGCCTGTaGCTATCCAGTTGTAGGGTA +
Preference number: 4 (lower is better)
Translates to: ARAELPIPSHLLQNVQGTTQHGL*LSSCRV
Trigger: TACCCTACAACTGGATAGGCACAGGCCATGTTGTGT...TGTTCCTTGCACATTTTGCAGCAGATGAGAAGGTATAGGCAGCTCAGCTCTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 72 bp GACACCCCCAAACGATACTTATATCAATTGCAAGAGTaGCTAGGGATAGCCCTTTCTCCTCTGCTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: DTPKRYLYQLQE*LGIALSPLLLS
Trigger: GGAGAGCAGCAGAGGAGAAAGGGCTATCCCTAGCAACTCTTGCAATTGATATAAGTATCGTTTGGGGGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 72 bp CTAGCCCAGGACACCCCCAAACGATACTTATATCAATaGCAAGAGTTGCTAGGGATAGCCCTTTCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: LAQDTPKRYLYQ*QELLGIALSPL
Trigger: CAGAGGAGAAAGGGCTATCCCTAGCAACTCTTGCAATTGATATAAGTATCGTTTGGGGGTGTCCTGGGCTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 72 bp GAGGACATAGCCTACTCCAGCTGGAATGCTGCTCCTTaGGGCTTTAGTCACTTCATCTACTCAACAGGCTTA +
Preference number: 4 (lower is better)
Translates to: EDIAYSSWNAAP*GFSHFIYSTGL
Trigger: TAAGCCTGTTGAGTAGATGAAGTGACTAAAGCCCAAAGGAGCAGCATTCCAGCTGGAGTAGGCTATGTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 72 bp GTAGACACCTTCAAGGGTACTGGGGATCAGTTGCTTTaGCAGGCAGAACTGTCTCAGTATAGGGCTTTACCA +
Preference number: 4 (lower is better)
Translates to: VDTFKGTGDQLL*QAELSQYRALP
Trigger: TGGTAAAGCCCTATACTGAGACAGTTCTGCCTGCAAAAGCAACTGATCCCCAGTACCCTTGAAGGTGTCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp TTCCTATCCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACATCCAGCGTATTCATCTaGGAGGCCACCTTCTGGATG +
Preference number: 4 (lower is better)
Translates to: FLSLSSPVNGPLCSLLSTSSVFI*EATFWM
Trigger: CATCCAGAAGGTGGCCTCCCAGATGAATACGCTGGA...TGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGGATAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp ATTTCAGGAGTGAGTTATTCCTTAAGTAAAACATCACCCAACAATGCCTGGAAGCCTCCCGACCTTGGCTaGGGACTTCTGGATGCAAAG +
Preference number: 4 (lower is better)
Translates to: ISGVSYSLSKTSPNNAWKPPDLG*GLLDAK
Trigger: CTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAGG...CTTCCAGGCATTGTTGGGTGATGTTTTACTTAAGGAATAACTCACTCCTGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp CCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGCATGTCCGTAGTAGTAGTTGGTaGCATAGATCCTGTCATCAA +
Preference number: 4 (lower is better)
Translates to: PCPHLSMGLFVVYFPQHVRSSSW*HRSCHQ
Trigger: TTGATGACAGGATCTATGTCACCAACTACTACTACG...GACATGCTGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp ATTTCAGGAGTGAGTTATTCCTTAAGTAAAACATCACCCAACAATGCCTGGAAGCCTGTCATCAAGAGCTaGAGGGTCCTTCATCCAGGC +
Preference number: 4 (lower is better)
Translates to: ISGVSYSLSKTSPNNAWKPVIKS*RVLHPG
Trigger: GCCTGGATGAAGGACCCTGCAGCTCTTGATGACAGG...CTTCCAGGCATTGTTGGGTGATGTTTTACTTAAGGAATAACTCACTCCTGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR GCA 90 bp CCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGCATGTCAACACAATCACCTCATaGTGTGTTTCGTCATGCTCA +
Preference number: 4 (lower is better)
Translates to: PCPHLSMGLFVVYFPQHVNTITS*CVSSCS
Trigger: TGAGCATGACGAAACACAGCATGAGGTGATTGTGTT...GACATGCTGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
3UTR CAA 72 bp ATCTTGAATGACTGCAACTACCAGTTCTTTTGGGGCTaGTTACCAGCACGGCACAAAGATAGCAGGAAACAT +
Preference number: 4 (lower is better)
Translates to: ILNDCNYQFFWG*LPARHKDSRKH
Trigger: ATGTTTCCTGCTATCTTTGTGCCGTGCTGGTAACAAGCCCCAAAAGAACTGGTAGTTGCAGTCATTCAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp TCACTGTCCCTCTTTATTTCAGGAGTGAGTTATTCCTTAAGTAAAACATCACCCAGTTGCTCACTGAGGTaGTGTACGCTGTCTTTCACC +
Preference number: 4 (lower is better)
Translates to: SLSLFISGVSYSLSKTSPSCSLR*CTLSFT
Trigger: GGTGAAAGACAGCGTACACCACCTCAGTGAGCAACT...GGGTGATGTTTTACTTAAGGAATAACTCACTCCTGAAATAAAGAGGGACAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp CCATTTAAAAATGAGGAAATGAACTATGTTTACCATACAGCACACAAAGGCCTGGCCACTTCCAGGGTGTaGTGTCCTCATAGACCACAT +
Preference number: 4 (lower is better)
Translates to: PFKNEEMNYVYHTAHKGLATSRV*CPHRPH
Trigger: ATGTGGTCTATGAGGACACCACACCCTGGAAGTGGC...CAGGCCTTTGTGTGCTGTATGGTAAACATAGTTCATTTCCTCATTTTTAAATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CCA 90 bp CCATTTAAAAATGAGGAAATGAACTATGTTTACCATACAGCACACAAAGGCCTGAAATCAATGTCCGAGTaGCCACGCCACTTCCAGGGT +
Preference number: 4 (lower is better)
Translates to: PFKNEEMNYVYHTAHKGLKSMSE*PRHFQG
Trigger: ACCCTGGAAGTGGCGTGGCCACTCGGACATTGATTT...CAGGCCTTTGTGTGCTGTATGGTAAACATAGTTCATTTCCTCATTTTTAAATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR TCA 90 bp TCACTGTCCCTCTTTATTTCAGGAGTGAGTTATTCCTTAAGTAAAACATCACCCTCCATCGGCCTTGTTTaGAATTTTCCAGGTTTCGAA +
Preference number: 4 (lower is better)
Translates to: SLSLFISGVSYSLSKTSPSIGLV*NFPGFE
Trigger: TTCGAAACCTGGAAAATTTCAAACAAGGCCGATGGA...GGGTGATGTTTTACTTAAGGAATAACTCACTCCTGAAATAAAGAGGGACAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 90 bp GGCCTCCTGTCTGCCTGCCTTGTAGTAGGTGAAGCCTCGGATCACTaGCTGCTGCTGAGCCAGCGCACGTGGCCTGGCTGTGGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: GLLSACLVVGEASDH*LLLSQRTWPGCGLG
Trigger: CCCCAGCCCACAGCCAGGCCACGTGCGCTGGCTCAGCAGCAGGCAGTGATCCGAGGCTTCACCTACTACAAGGCAGGCAGACAGGAGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 90 bp CAGCTGTGTCCTGAGCCTTGCTGTCGGGGCTTGAGGCTGGGGCAGTaGCAGGGACAGCGGCTGCATCCCTCTGCAGCAACTGGAGGCCCA +
Preference number: 5 (lower is better)
Translates to: QLCPEPCCRGLRLGQ*QGQRLHPSAATGGP
Trigger: TGGGCCTCCAGTTGCTGCAGAGGGATGCAGCCGCTGTCCCTGCCACTGCCCCAGCCTCAAGCCCCGACAGCAAGGCTCAGGACACAGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 90 bp GGGCTTGAGGCTGGGGCAGTGGCAGGGACAGCGGCTGCATCCCTCTaGAGCAACTGGAGGCCCAGGCTAGACAGCTCCTTCTTGATGCTC +
Preference number: 5 (lower is better)
Translates to: GLEAGAVAGTAAASL*SNWRPRLDSSFLML
Trigger: GAGCATCAAGAAGGAGCTGTCTAGCCTGGGCCTCCAGTTGCTGCAGAGGGATGCAGCCGCTGTCCCTGCCACTGCCCCAGCCTCAAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 90 bp AGCCCCGGAGCTCACTGTCTCCACAGTGTAGAAGTCCTCTACTCGTaGTCGCCCACTTCGCACCCGGCTGCATGCATCCTTGCTCAGCGG +
Preference number: 5 (lower is better)
Translates to: SPGAHCLHSVEVLYS*SPTSHPAACILAQR
Trigger: CCGCTGAGCAAGGATGCATGCAGCCGGGTGCGAAGTGGGCGAGCACGAGTAGAGGACTTCTACACTGTGGAGACAGTGAGCTCCGGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 90 bp GTGCCCTCACAGCTGTCCTCCCGACCTTGGCTGGGGACTTCTGGATaGAAAGGTGGCTCAGTAGGCCAGGGAGTGGTGATAGGGCTTGGG +
Preference number: 5 (lower is better)
Translates to: VPSQLSSRPWLGTSG*KGGSVGQGVVIGLG
Trigger: CCCAAGCCCTATCACCACTCCCTGGCCTACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAGGACAGCTGTGAGGGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 90 bp GTAGGTGAAGCCTCGGATCACTGCCTGCTGCTGAGCCAGCGCACGTaGCCTGGCTGTGGGCTGGGGTATTCTGCCCTTGATGCTCTCCTT +
Preference number: 5 (lower is better)
Translates to: VGEASDHCLLLSQRT*PGCGLGYSALDALL
Trigger: AAGGAGAGCATCAAGGGCAGAATACCCCAGCCCACAGCCAGGCCACGTGCGCTGGCTCAGCAGCAGGCAGTGATCCGAGGCTTCACCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp TCCCAAAGACCTTGCTTGCGGAGCCCTGGAAGGGGACTGGAGGTGAGAAGATTGCCTTGCTGTCGGGGCTaGAGGCTGGGGCAGTGGCAG +
Preference number: 5 (lower is better)
Translates to: SQRPCLRSPGRGLEVRRLPCCRG*RLGQWQ
Trigger: CTGCCACTGCCCCAGCCTCAAGCCCCGACAGCAAGG...CAATCTTCTCACCTCCAGTCCCCTTCCAGGGCTCCGCAAGCAAGGTCTTTGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp GCCCACTTCGCACCCGGCTGCATGCATCCTTGCTCAGCGGTCGCATaGTGCATTTGCAGCGGCAGTCAGAGCCCTCTGAGGTCATCCGAA +
Preference number: 5 (lower is better)
Translates to: AHFAPGCMHPCSAVA*CICSGSQSPLRSSE
Trigger: TTCGGATGACCTCAGAGGGCTCTGACTGCCGCTGCAAATGCATCATGCGACCGCTGAGCAAGGATGCATGCAGCCGGGTGCGAAGTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp CCTGCTTCTTCAGTTTCTCCATCTTCCACTCGTTCTCACAGGGGTTaGGTGAGGAGGGCGGGGCGGTGCAGGAGCACCTGCAGTCAGCCC +
Preference number: 5 (lower is better)
Translates to: PASSVSPSSTRSHRG*VRRAGRCRSTCSQP
Trigger: GGGCTGACTGCAGGTGCTCCTGCACCGCCCCGCCCTCCTCACTCAACCCCTGTGAGAACGAGTGGAAGATGGAGAAACTGAAGAAGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 90 bp GCTGGGGCAGTGGCAGGGACAGCGGCTGCATCCCTCTGCAGCAACTaGAGGCCCAGGCTAGACAGCTCCTTCTTGATGCTCATCATGATG +
Preference number: 5 (lower is better)
Translates to: AGAVAGTAAASLCSN*RPRLDSSFLMLIMM
Trigger: CATCATGATGAGCATCAAGAAGGAGCTGTCTAGCCTGGGCCTCCAGTTGCTGCAGAGGGATGCAGCCGCTGTCCCTGCCACTGCCCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 90 bp ACAGCTGTCCTCCCGACCTTGGCTGGGGACTTCTGGATGCAAAGGTaGCTCAGTAGGCCAGGGAGTGGTGATAGGGCTTGGGGTGGTGGT +
Preference number: 5 (lower is better)
Translates to: TAVLPTLAGDFWMQR*LSRPGSGDRAWGGG
Trigger: ACCACCACCCCAAGCCCTATCACCACTCCCTGGCCTACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAGGACAGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 90 bp GGATCCACAGCTCTGAGTGTGCCCTCACAGCTGTCCTCCCGACCTTaGCTGGGGACTTCTGGATGCAAAGGTGGCTCAGTAGGCCAGGGA +
Preference number: 5 (lower is better)
Translates to: GSTALSVPSQLSSRP*LGTSGCKGGSVGQG
Trigger: TCCCTGGCCTACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAGGACAGCTGTGAGGGCACACTCAGAGCTGTGGATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 90 bp GAAAGCAGTTCCCATAGGAGTTCCTCCTCAGCCGTGTCTTCCACGTaGTCTCCCGGTGCACAGAGAGGTCTGCTGGGTCCAGGCGGCTCA +
Preference number: 5 (lower is better)
Translates to: ESSSHRSSSSAVSST*SPGAQRGLLGPGGS
Trigger: TGAGCCGCCTGGACCCAGCAGACCTCTCTGTGCACCGGGAGACCACGTGGAAGACACGGCTGAGGAGGAACTCCTATGGGAACTGCTTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp CTGCCATATTTGTTGAGATCTCTGCCTTGCCCTCCAGCTGTGTCCTaGGCCTTGCTGTCGGGGCTTGAGGCTGGGGCAGTGGCAGGGACA +
Preference number: 5 (lower is better)
Translates to: LPYLLRSLPCPPAVS*ALLSGLEAGAVAGT
Trigger: TGTCCCTGCCACTGCCCCAGCCTCAAGCCCCGACAGCAAGGCTCAGGACACAGCTGGAGGGCAAGGCAGAGATCTCAACAAATATGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp GAGCCAGCGCACGTGGCCTGGCTGTGGGCTGGGGTATTCTGCCCTTaGTGCTCTCCTTCCTCAGCTTCTCCACTTTCAGCAGCTTCTCCT +
Preference number: 5 (lower is better)
Translates to: EPAHVAWLWAGVFCP*CSPSSASPLSAASP
Trigger: AGGAGAAGCTGCTGAAAGTGGAGAAGCTGAGGAAGGAGAGCATCAAGGGCAGAATACCCCAGCCCACAGCCAGGCCACGTGCGCTGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp TGGCCTCTATCTTGGGTGGTAGCTTCTCCAGCCAGGAAGTTCCTTTaGGGGTGCTGTCAGCGGCAGCCTTGGGTGCCTCCTGTCTGGCCT +
Preference number: 5 (lower is better)
Translates to: WPLSWVVASPARKFL*GCCQRQPWVPPVWP
Trigger: AGGCCAGACAGGAGGCACCCAAGGCTGCCGCTGACAGCACCCTCAAAGGAACTTCCTGGCTGGAGAAGCTACCACCCAAGATAGAGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp CATGGCGCCCATAACTGTGGTGTTTCACAGGGGGATCCACAGCTCTaGGTGTGCCCTCACAGCTGTCCTCCCGACCTTGGCTGGGGACTT +
Preference number: 5 (lower is better)
Translates to: HGAHNCGVSQGDPQL*VCPHSCPPDLGWGL
Trigger: AAGTCCCCAGCCAAGGTCGGGAGGACAGCTGTGAGGGCACACTCAGAGCTGTGGATCCCCCTGTGAAACACCACAGTTATGGGCGCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 90 bp GTAGAAGTCCTCTACTCGTGCTCGCCCACTTCGCACCCGGCTGCATaGATCCTTGCTCAGCGGTCGCATGATGCATTTGCAGCGGCAGTC +
Preference number: 5 (lower is better)
Translates to: VEVLYSCSPTSHPAA*ILAQRSHDAFAAAV
Trigger: GACTGCCGCTGCAAATGCATCATGCGACCGCTGAGCAAGGATGCATGCAGCCGGGTGCGAAGTGGGCGAGCACGAGTAGAGGACTTCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 90 bp CCTCAGCCGTGTCTTCCACGTGGTCTCCCGGTGCACAGAGAGGTCTaGTGGGTCCAGGCGGCTCAACACAATCACCTCATGCTGTGTTTC +
Preference number: 5 (lower is better)
Translates to: PQPCLPRGLPVHREV*WVQAAQHNHLMLCF
Trigger: GAAACACAGCATGAGGTGATTGTGTTGAGCCGCCTGGACCCAGCAGACCTCTCTGTGCACCGGGAGACCACGTGGAAGACACGGCTGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 90 bp CAGCCGTGTCTTCCACGTGGTCTCCCGGTGCACAGAGAGGTCTGCTaGGTCCAGGCGGCTCAACACAATCACCTCATGCTGTGTTTCGTC +
Preference number: 5 (lower is better)
Translates to: QPCLPRGLPVHREVC*VQAAQHNHLMLCFV
Trigger: GACGAAACACAGCATGAGGTGATTGTGTTGAGCCGCCTGGACCCAGCAGACCTCTCTGTGCACCGGGAGACCACGTGGAAGACACGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp CAGAGCCTGTTCCATCTTGGGGCCACCCACTCTGAGGACAAAGGCCTTACTCCTGCTGTCCTCCCGACCTaGGCTGGGGACTTCTGGATG +
Preference number: 5 (lower is better)
Translates to: QSLFHLGATHSEDKGLTPAVLPT*AGDFWM
Trigger: CATCCAGAAGTCCCCAGCCAAGGTCGGGAGGACAGC...AGGAGTAAGGCCTTTGTCCTCAGAGTGGGTGGCCCCAAGATGGAACAGGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp GGCAGTCAGAGCCCTCTGAGGTCATCCGAACCTGGTCCAGGTCACTaGATACCTTACTGTCGGGCCACACAGGACCAGCCCGAAGCAAAA +
Preference number: 5 (lower is better)
Translates to: GSQSPLRSSEPGPGH*IPYCRATQDQPEAK
Trigger: TTTTGCTTCGGGCTGGTCCTGTGTGGCCCGACAGTAAGGTATTCAGTGACCTGGACCAGGTTCGGATGACCTCAGAGGGCTCTGACTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp GTGACCTTCTGGAATGTGGTTAGACAGAAGAGCAGGAGAGCACAGGGGCTGCCCTTCTCCAGGCTCAGGTaGGCCTTGATGCTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: VTFWNVVRQKSRRAQGLPFSRLR*ALMLSS
Trigger: GGAGGAGAGCATCAAGGCCAACCTGAGCCTGGAGAA...GGGCAGCCCCTGTGCTCTCCTGCTCTTCTGTCTAACCACATTCCAGAAGGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp GCTCAGCGGTCGCATGATGCATTTGCAGCGGCAGTCAGAGCCCTCTaGGGTCATCCGAACCTGGTCCAGGTCACTGAATACCTTACTGTC +
Preference number: 5 (lower is better)
Translates to: AQRSHDAFAAAVRAL*GHPNLVQVTEYLTV
Trigger: GACAGTAAGGTATTCAGTGACCTGGACCAGGTTCGGATGACCTCAGAGGGCTCTGACTGCCGCTGCAAATGCATCATGCGACCGCTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 90 bp CCACCTGGCCTTCATGCTGGTTGTAAGTGTCCACGGTGTAGAGGATaGCGCACACCAGAAAGCAGTTCCCATAGGAGTTCCTCCTCAGCC +
Preference number: 5 (lower is better)
Translates to: PPGLHAGCKCPRCRG*RTPESSSHRSSSSA
Trigger: GGCTGAGGAGGAACTCCTATGGGAACTGCTTTCTGGTGTGCGGCATCCTCTACACCGTGGACACTTACAACCAGCATGAAGGCCAGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp TTATATCAATTGCAAGAGTTGCTAGGGATAGCCCTTTCTCCTCTGCTGCTCTCCCTGTCAGCGGCAGCCTaGGGTGCCTCCTGTCTGGCC +
Preference number: 5 (lower is better)
Translates to: LYQLQELLGIALSPLLLSLSAAA*GASCLA
Trigger: GGCCAGACAGGAGGCACCCAAGGCTGCCGCTGACAG...GGAGAGCAGCAGAGGAGAAAGGGCTATCCCTAGCAACTCTTGCAATTGATATAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 90 bp GTCAACCTGGGTGGTATAGGAATACTCATTGAGGAAGGGCAACTGTaGGTGAGCATCAGTGCCAGTGTGGGTGTCGAACGCATAGGCCAC +
Preference number: 5 (lower is better)
Translates to: VNLGGIGILIEEGQL*VSISASVGVERIGH
Trigger: GTGGCCTATGCGTTCGACACCCACACTGGCACTGATGCTCACCCACAGTTGCCCTTCCTCAATGAGTATTCCTATACCACCCAGGTTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp TCACCTCATGCTGTGTTTCGTCATGCTCATCCACAGCTGGGTAGATaGCCCACAGGCCGCTCTCATCCACGGCAAAATCAATGTCCGAGT +
Preference number: 5 (lower is better)
Translates to: SPHAVFRHAHPQLGR*PTGRSHPRQNQCPS
Trigger: ACTCGGACATTGATTTTGCCGTGGATGAGAGCGGCCTGTGGGTCATCTACCCAGCTGTGGATGAGCATGACGAAACACAGCATGAGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 90 bp GAGGCCCAGGCTAGACAGCTCCTTCTTGATGCTCATCATGATGGCTaGCTGGTTCTCATAGCTCTTCAGTTGCTCACTGAGGTGGTGTAC +
Preference number: 5 (lower is better)
Translates to: EAQARQLLLDAHHDG*LVLIALQLLTEVVY
Trigger: GTACACCACCTCAGTGAGCAACTGAAGAGCTATGAGAACCAGTCAGCCATCATGATGAGCATCAAGAAGGAGCTGTCTAGCCTGGGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp CCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGCATGTCAGGCTCAGGTTGGCCTaGATGCTCTCCTCCAGCGTA +
Preference number: 5 (lower is better)
Translates to: PCPHLSMGLFVVYFPQHVRLRLA*MLSSSV
Trigger: TACGCTGGAGGAGAGCATCAAGGCCAACCTGAGCCT...GACATGCTGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp TCCCAAAGACCTTGCTTGCGGAGCCCTGGAAGGGGACTGGAGGTGAGAAGATTGTGTATGCTGCCATATTaGTTGAGATCTCTGCCTTGC +
Preference number: 5 (lower is better)
Translates to: SQRPCLRSPGRGLEVRRLCMLPY*LRSLPC
Trigger: GCAAGGCAGAGATCTCAACAAATATGGCAGCATACA...CAATCTTCTCACCTCCAGTCCCCTTCCAGGGCTCCGCAAGCAAGGTCTTTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp CCTTGTCCTCACCTGTCAATGGGCCTCTTTGTAGTTTACTTTCCACAGCATGTCAGCCAGGAAGTTCCTTaGAGGGTGCTGTCAGCGGCA +
Preference number: 5 (lower is better)
Translates to: PCPHLSMGLFVVYFPQHVSQEVP*RVLSAA
Trigger: TGCCGCTGACAGCACCCTCAAAGGAACTTCCTGGCT...GACATGCTGTGGAAAGTAAACTACAAAGAGGCCCATTGACAGGTGAGGACAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp TTGCTTTTGCAGGCAGAACTGTCTCAGTATAGGGCTTTACCAAAGGAGATCAGCAGTTTGGCCTCTATCTaGGGTGGTAGCTTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: LLLQAELSQYRALPKEISSLASI*GGSFSS
Trigger: GCTGGAGAAGCTACCACCCAAGATAGAGGCCAAACT...GCTGATCTCCTTTGGTAAAGCCCTATACTGAGACAGTTCTGCCTGCAAAAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp GCTTATATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTGGTCGCATGATGCATTaGCAGCGGCAGTCAGAGCCC +
Preference number: 5 (lower is better)
Translates to: AYICSLVCPQSHLKENPGGRMMH*QRQSEP
Trigger: GGGCTCTGACTGCCGCTGCAAATGCATCATGCGACC...ACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATATAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp GCTTATATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTACCATAGACTGCAGCTaGAGGAGCTCAGGTGCCTGC +
Preference number: 5 (lower is better)
Translates to: AYICSLVCPQSHLKENPGTIDCS*RSSGAC
Trigger: GCAGGCACCTGAGCTCCTCAAGCTGCAGTCTATGGT...ACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATATAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp GCTTATATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTGTTGAGATCTCTGCCTaGCCCTCCAGCTGTGTCCTG +
Preference number: 5 (lower is better)
Translates to: AYICSLVCPQSHLKENPGVEISA*PSSCVL
Trigger: CAGGACACAGCTGGAGGGCAAGGCAGAGATCTCAAC...ACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATATAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp ATGAGAGAAAATACTGCCGATTTGGGGGTTCCAGGGTTGATTAGTGTGACTGCAATGCTGCCATATTTGTaGAGATCTCTGCCTTGCCCT +
Preference number: 5 (lower is better)
Translates to: MRENTADLGVPGLISVTAMLPYL*RSLPCP
Trigger: AGGGCAAGGCAGAGATCTCAACAAATATGGCAGCAT...TGCAGTCACACTAATCAACCCTGGAACCCCCAAATCGGCAGTATTTTCTCTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp GCCAGAGCTGAGCTGCCTATACCTTCTCATCTGCTGCAAAATGTGCAAGGAACATGGCGCAGGTCATATTaGATGATATTCTTGGTGAAG +
Preference number: 5 (lower is better)
Translates to: ARAELPIPSHLLQNVQGTWRRSY*MIFLVK
Trigger: CTTCACCAAGAATATCATCAAATATGACCTGCGCCA...TGTTCCTTGCACATTTTGCAGCAGATGAGAAGGTATAGGCAGCTCAGCTCTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp TCACTGTCCCTCTTTATTTCAGGAGTGAGTTATTCCTTAAGTAAAACATCACCCCTAGACAGCTCCTTCTaGATGCTCATCATGATGGCT +
Preference number: 5 (lower is better)
Translates to: SLSLFISGVSYSLSKTSPLDSSF*MLIMMA
Trigger: AGCCATCATGATGAGCATCAAGAAGGAGCTGTCTAG...GGGTGATGTTTTACTTAAGGAATAACTCACTCCTGAAATAAAGAGGGACAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS-3UTR CAA 90 bp GCTTATATATGTTCACTTGTGTGTCCACAATCCCATCTCAAAGAAAATCCTGGTCTCCATCGGCCTTGTTaGAAATTTTCCAGGTTTCGA +
Preference number: 5 (lower is better)
Translates to: AYICSLVCPQSHLKENPGLHRPC*KFSRFR
Trigger: TCGAAACCTGGAAAATTTCAAACAAGGCCGATGGAG...ACCAGGATTTTCTTTGAGATGGGATTGTGGACACACAAGTGAACATATATAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp CCTGAGCCTTGCTGTCGGGGCTTGAGGCTGGGGCAGTaGCAGGGACAGCGGCTGCATCCCTCTGCAGCAACT +
Preference number: 6 (lower is better)
Translates to: PEPCCRGLRLGQ*QGQRLHPSAAT
Trigger: AGTTGCTGCAGAGGGATGCAGCCGCTGTCCCTGCCACTGCCCCAGCCTCAAGCCCCGACAGCAAGGCTCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp GCCTCGGATCACTGCCTGCTGCTGAGCCAGCGCACGTaGCCTGGCTGTGGGCTGGGGTATTCTGCCCTTGAT +
Preference number: 6 (lower is better)
Translates to: ASDHCLLLSQRT*PGCGLGYSALD
Trigger: ATCAAGGGCAGAATACCCCAGCCCACAGCCAGGCCACGTGCGCTGGCTCAGCAGCAGGCAGTGATCCGAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp CGTGCTCGCCCACTTCGCACCCGGCTGCATGCATCCTaGCTCAGCGGTCGCATGATGCATTTGCAGCGGCAG +
Preference number: 6 (lower is better)
Translates to: RARPLRTRLHAS*LSGRMMHLQRQ
Trigger: CTGCCGCTGCAAATGCATCATGCGACCGCTGAGCAAGGATGCATGCAGCCGGGTGCGAAGTGGGCGAGCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp CAGGAAGTTCCTTTGAGGGTGCTGTCAGCGGCAGCCTaGGGTGCCTCCTGTCTGGCCTCCTGTCTGGCCTCC +
Preference number: 6 (lower is better)
Translates to: QEVPLRVLSAAA*GASCLASCLAS
Trigger: GGAGGCCAGACAGGAGGCCAGACAGGAGGCACCCAAGGCTGCCGCTGACAGCACCCTCAAAGGAACTTCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 90 bp CGCACCCGGCTGCATGCATCCTTGCTCAGCGGTCGCATGATGCATTaGCAGCGGCAGTCAGAGCCCTCTGAGGTCATCCGAACCTGGTCC +
Preference number: 6 (lower is better)
Translates to: RTRLHASLLSGRMMH*QRQSEPSEVIRTWS
Trigger: GGACCAGGTTCGGATGACCTCAGAGGGCTCTGACTGCCGCTGCAAATGCATCATGCGACCGCTGAGCAAGGATGCATGCAGCCGGGTGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 90 bp TCCTCTACTCGTGCTCGCCCACTTCGCACCCGGCTGCATGCATCCTaGCTCAGCGGTCGCATGATGCATTTGCAGCGGCAGTCAGAGCCC +
Preference number: 6 (lower is better)
Translates to: SSTRARPLRTRLHAS*LSGRMMHLQRQSEP
Trigger: GGGCTCTGACTGCCGCTGCAAATGCATCATGCGACCGCTGAGCAAGGATGCATGCAGCCGGGTGCGAAGTGGGCGAGCACGAGTAGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp GCACCCGGCTGCATGCATCCTTGCTCAGCGGTCGCATaGTGCATTTGCAGCGGCAGTCAGAGCCCTCTGAGG +
Preference number: 6 (lower is better)
Translates to: APGCMHPCSAVA*CICSGSQSPLR
Trigger: CCTCAGAGGGCTCTGACTGCCGCTGCAAATGCATCATGCGACCGCTGAGCAAGGATGCATGCAGCCGGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp CCTGTCTGGCCTCCTGTCTGCCTGCCTTGTAGTAGGTaGAGCCTCGGATCACTGCCTGCTGCTGAGCCAGCG +
Preference number: 6 (lower is better)
Translates to: PVWPPVCLPCSR*SLGSLPAAEPA
Trigger: CGCTGGCTCAGCAGCAGGCAGTGATCCGAGGCTTCACCTACTACAAGGCAGGCAGACAGGAGGCCAGACAGG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 72 bp TCTGCCTGCCTTGTAGTAGGTGAAGCCTCGGATCACTaGCTGCTGCTGAGCCAGCGCACGTGGCCTGGCTGT +
Preference number: 6 (lower is better)
Translates to: SACLVVGEASDH*LLLSQRTWPGC
Trigger: ACAGCCAGGCCACGTGCGCTGGCTCAGCAGCAGGCAGTGATCCGAGGCTTCACCTACTACAAGGCAGGCAGA
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp GTGGCAGGGACAGCGGCTGCATCCCTCTGCAGCAACTaGAGGCCCAGGCTAGACAGCTCCTTCTTGATGCTC +
Preference number: 6 (lower is better)
Translates to: VAGTAAASLCSN*RPRLDSSFLML
Trigger: GAGCATCAAGAAGGAGCTGTCTAGCCTGGGCCTCCAGTTGCTGCAGAGGGATGCAGCCGCTGTCCCTGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp TTGTTGAGATCTCTGCCTTGCCCTCCAGCTGTGTCCTaGGCCTTGCTGTCGGGGCTTGAGGCTGGGGCAGTG +
Preference number: 6 (lower is better)
Translates to: LLRSLPCPPAVS*ALLSGLEAGAV
Trigger: CACTGCCCCAGCCTCAAGCCCCGACAGCAAGGCTCAGGACACAGCTGGAGGGCAAGGCAGAGATCTCAACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp CTCCCGACCTTGGCTGGGGACTTCTGGATGCAAAGGTaGCTCAGTAGGCCAGGGAGTGGTGATAGGGCTTGG +
Preference number: 6 (lower is better)
Translates to: LPTLAGDFWMQR*LSRPGSGDRAW
Trigger: CCAAGCCCTATCACCACTCCCTGGCCTACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp CTCACAGCTGTCCTCCCGACCTTGGCTGGGGACTTCTaGATGCAAAGGTGGCTCAGTAGGCCAGGGAGTGGT +
Preference number: 6 (lower is better)
Translates to: LTAVLPTLAGDF*MQRWLSRPGSG
Trigger: ACCACTCCCTGGCCTACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAGGACAGCTGTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp CTTCCACGTGGTCTCCCGGTGCACAGAGAGGTCTGCTaGGTCCAGGCGGCTCAACACAATCACCTCATGCTG +
Preference number: 6 (lower is better)
Translates to: LPRGLPVHREVC*VQAAQHNHLML
Trigger: CAGCATGAGGTGATTGTGTTGAGCCGCCTGGACCCAGCAGACCTCTCTGTGCACCGGGAGACCACGTGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp TCCCATAGGAGTTCCTCCTCAGCCGTGTCTTCCACGTaGTCTCCCGGTGCACAGAGAGGTCTGCTGGGTCCA +
Preference number: 6 (lower is better)
Translates to: SHRSSSSAVSST*SPGAQRGLLGP
Trigger: TGGACCCAGCAGACCTCTCTGTGCACCGGGAGACCACGTGGAAGACACGGCTGAGGAGGAACTCCTATGGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 90 bp TTGGCCTCTATCTTGGGTGGTAGCTTCTCCAGCCAGGAAGTTCCTTaGAGGGTGCTGTCAGCGGCAGCCTTGGGTGCCTCCTGTCTGGCC +
Preference number: 6 (lower is better)
Translates to: LASILGGSFSSQEVP*RVLSAAALGASCLA
Trigger: GGCCAGACAGGAGGCACCCAAGGCTGCCGCTGACAGCACCCTCAAAGGAACTTCCTGGCTGGAGAAGCTACCACCCAAGATAGAGGCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp TCTTGGGTGGTAGCTTCTCCAGCCAGGAAGTTCCTTTaGGGGTGCTGTCAGCGGCAGCCTTGGGTGCCTCCT +
Preference number: 6 (lower is better)
Translates to: SWVVASPARKFL*GCCQRQPWVPP
Trigger: AGGAGGCACCCAAGGCTGCCGCTGACAGCACCCTCAAAGGAACTTCCTGGCTGGAGAAGCTACCACCCAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 72 bp CTCTACTCGTGCTCGCCCACTTCGCACCCGGCTGCATaGATCCTTGCTCAGCGGTCGCATGATGCATTTGCA +
Preference number: 6 (lower is better)
Translates to: LYSCSPTSHPAA*ILAQRSHDAFA
Trigger: TGCAAATGCATCATGCGACCGCTGAGCAAGGATGCATGCAGCCGGGTGCGAAGTGGGCGAGCACGAGTAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 72 bp CAGCTGTCCTCCCGACCTTGGCTGGGGACTTCTGGATaGAAAGGTGGCTCAGTAGGCCAGGGAGTGGTGATA +
Preference number: 6 (lower is better)
Translates to: QLSSRPWLGTSG*KGGSVGQGVVI
Trigger: TATCACCACTCCCTGGCCTACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAGGACAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 72 bp TGTCTTCCACGTGGTCTCCCGGTGCACAGAGAGGTCTaGTGGGTCCAGGCGGCTCAACACAATCACCTCATG +
Preference number: 6 (lower is better)
Translates to: CLPRGLPVHREV*WVQAAQHNHLM
Trigger: CATGAGGTGATTGTGTTGAGCCGCCTGGACCCAGCAGACCTCTCTGTGCACCGGGAGACCACGTGGAAGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp CAGCGGCAGTCAGAGCCCTCTGAGGTCATCCGAACCTaGTCCAGGTCACTGAATACCTTACTGTCGGGCCAC +
Preference number: 6 (lower is better)
Translates to: QRQSEPSEVIRT*SRSLNTLLSGH
Trigger: GTGGCCCGACAGTAAGGTATTCAGTGACCTGGACCAGGTTCGGATGACCTCAGAGGGCTCTGACTGCCGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CCA 72 bp GCTCTGAGTGTGCCCTCACAGCTGTCCTCCCGACCTTaGCTGGGGACTTCTGGATGCAAAGGTGGCTCAGTA +
Preference number: 6 (lower is better)
Translates to: ALSVPSQLSSRP*LGTSGCKGGSV
Trigger: TACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAGGACAGCTGTGAGGGCACACTCAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp ATCTTGGGTGGTAGCTTCTCCAGCCAGGAAGTTCCTTaGAGGGTGCTGTCAGCGGCAGCCTTGGGTGCCTCC +
Preference number: 6 (lower is better)
Translates to: ILGGSFSSQEVP*RVLSAAALGAS
Trigger: GGAGGCACCCAAGGCTGCCGCTGACAGCACCCTCAAAGGAACTTCCTGGCTGGAGAAGCTACCACCCAAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp AGCTCTGAGTGTGCCCTCACAGCTGTCCTCCCGACCTaGGCTGGGGACTTCTGGATGCAAAGGTGGCTCAGT +
Preference number: 6 (lower is better)
Translates to: SSECALTAVLPT*AGDFWMQRWLS
Trigger: ACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAGGTCGGGAGGACAGCTGTGAGGGCACACTCAGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 72 bp GCTCACTGTCTCCACAGTGTAGAAGTCCTCTACTCGTaGTCGCCCACTTCGCACCCGGCTGCATGCATCCTT +
Preference number: 6 (lower is better)
Translates to: AHCLHSVEVLYS*SPTSHPAACIL
Trigger: AAGGATGCATGCAGCCGGGTGCGAAGTGGGCGAGCACGAGTAGAGGACTTCTACACTGTGGAGACAGTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp CTGCATGCATCCTTGCTCAGCGGTCGCATGATGCATTaGCAGCGGCAGTCAGAGCCCTCTGAGGTCATCCGA +
Preference number: 6 (lower is better)
Translates to: LHASLLSGRMMH*QRQSEPSEVIR
Trigger: TCGGATGACCTCAGAGGGCTCTGACTGCCGCTGCAAATGCATCATGCGACCGCTGAGCAAGGATGCATGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp AGGGCACCCTCCAGGAGATCCACCATAGACTGCAGCTaGAGGAGCTCAGGTGCCTGCTTCTTCAGTTTCTCC +
Preference number: 6 (lower is better)
Translates to: RAPSRRSTIDCS*RSSGACFFSFS
Trigger: GGAGAAACTGAAGAAGCAGGCACCTGAGCTCCTCAAGCTGCAGTCTATGGTGGATCTCCTGGAGGGTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp TCGCATGATGCATTTGCAGCGGCAGTCAGAGCCCTCTaGGGTCATCCGAACCTGGTCCAGGTCACTGAATAC +
Preference number: 6 (lower is better)
Translates to: SHDAFAAAVRAL*GHPNLVQVTEY
Trigger: GTATTCAGTGACCTGGACCAGGTTCGGATGACCTCAGAGGGCTCTGACTGCCGCTGCAAATGCATCATGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp GCTGTGTTTCGTCATGCTCATCCACAGCTGGGTAGATaGCCCACAGGCCGCTCTCATCCACGGCAAAATCAA +
Preference number: 6 (lower is better)
Translates to: AVFRHAHPQLGR*PTGRSHPRQNQ
Trigger: TTGATTTTGCCGTGGATGAGAGCGGCCTGTGGGTCATCTACCCAGCTGTGGATGAGCATGACGAAACACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp ACGCTGTCTTTCACCACCTTGTTCTCCAGGCTCAGGTaGGCCTTGATGCTCTCCTCCAGCGTATTCATCTGG +
Preference number: 6 (lower is better)
Translates to: TLSFTTLFSRLR*ALMLSSSVFIW
Trigger: CCAGATGAATACGCTGGAGGAGAGCATCAAGGCCAACCTGAGCCTGGAGAACAAGGTGGTGAAAGACAGCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp CTTCTGTATGCTGCCATATTTGTTGAGATCTCTGCCTaGCCCTCCAGCTGTGTCCTGAGCCTTGCTGTCGGG +
Preference number: 6 (lower is better)
Translates to: LLYAAIFVEISA*PSSCVLSLAVG
Trigger: CCCGACAGCAAGGCTCAGGACACAGCTGGAGGGCAAGGCAGAGATCTCAACAAATATGGCAGCATACAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 90 bp TGCAGCCGGACGTCATCATGTTTGGCAGAGTTAGGTTCCGGAAGTTaGGCCTCTATCTTGGGTGGTAGCTTCTCCAGCCAGGAAGTTCCT +
Preference number: 6 (lower is better)
Translates to: CSRTSSCLAELGSGS*ASILGGSFSSQEVP
Trigger: AGGAACTTCCTGGCTGGAGAAGCTACCACCCAAGATAGAGGCCAAACTTCCGGAACCTAACTCTGCCAAACATGATGACGTCCGGCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 90 bp CTCATAGACCACATCAGGCAGCAGGGCCCAGGAGGCCACAAAGCGTaGGCGCAGGTCATATTTGATGATATTCTTGGTGAAGGCACGGTT +
Preference number: 6 (lower is better)
Translates to: LIDHIRQQGPGGHKA*AQVIFDDILGEGTV
Trigger: AACCGTGCCTTCACCAAGAATATCATCAAATATGACCTGCGCCAACGCTTTGTGGCCTCCTGGGCCCTGCTGCCTGATGTGGTCTATGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 72 bp GTAATGTCAGGGGTCAAGTTGCCTCCTTCTGAAGCCTaGAGCCGGACGTCATCATGTTTGGCAGAGTTAGGT +
Preference number: 6 (lower is better)
Translates to: VMSGVKLPPSEA*SRTSSCLAELG
Trigger: ACCTAACTCTGCCAAACATGATGACGTCCGGCTGCAGGCTTCAGAAGGAGGCAACTTGACCCCTGACATTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS GCA 72 bp CTTCATGCTGGTTGTAAGTGTCCACGGTGTAGAGGATaGCGCACACCAGAAAGCAGTTCCCATAGGAGTTCC +
Preference number: 6 (lower is better)
Translates to: LHAGCKCPRCRG*RTPESSSHRSS
Trigger: GGAACTCCTATGGGAACTGCTTTCTGGTGTGCGGCATCCTCTACACCGTGGACACTTACAACCAGCATGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp GGTTGTAGTCAACCTGGGTGGTATAGGAATACTCATTaGGGAAGGGCAACTGTGGGTGAGCATCAGTGCCAG +
Preference number: 6 (lower is better)
Translates to: GCSQPGWYRNTH*GRATVGEHQCQ
Trigger: CTGGCACTGATGCTCACCCACAGTTGCCCTTCCTCAATGAGTATTCCTATACCACCCAGGTTGACTACAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS CAA 72 bp TTGGCAGAGTTAGGTTCCGGAAGTTTGGCCTCTATCTaGGGTGGTAGCTTCTCCAGCCAGGAAGTTCCTTTG +
Preference number: 6 (lower is better)
Translates to: LAELGSGSLASI*GGSFSSQEVPL
Trigger: CAAAGGAACTTCCTGGCTGGAGAAGCTACCACCCAAGATAGAGGCCAAACTTCCGGAACCTAACTCTGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp GAAACTCCACCAGGCTGTTTCCGTAGTAGTAGTTGGTaGCATAGATCCTGTCATCAAGAGCTGCAGGGTCCT +
Preference number: 6 (lower is better)
Translates to: ETPPGCFRSSSW*HRSCHQELQGP
Trigger: AGGACCCTGCAGCTCTTGATGACAGGATCTATGTCACCAACTACTACTACGGAAACAGCCTGGTGGAGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6
CDS TCA 72 bp AGGGTAGTTTATACATATTACTCCATCGGCCTTGTTTaGAATTTTCCAGGTTTCGAAACTCCACCAGGCTGT +
Preference number: 6 (lower is better)
Translates to: RVVYTYYSIGLV*NFPGFETPPGC
Trigger: ACAGCCTGGTGGAGTTTCGAAACCTGGAAAATTTCAAACAAGGCCGATGGAGTAATATGTATAAACTACCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057279.6