Pregenerated sensors for OLA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027108Ensembl transcript IDs: ENSMUST00000028517.13, ENSMUST00000100015.6, ENSMUST00000112055.8
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCACTTCTAAGATACAACTGCAGCTGCCCCACACTGCCAGGTCCTaGGTCACACACGCCTTAAAATTCTGTAATCAGCAGCCAGCAGGT | + |
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Preference number: 1 (lower is better) Translates to: LTSKIQLQLPHTARS*VTHALKFCNQQPAG Trigger: ACCTGCTGGCTGCTGATTACAGAATTTTAAGGCGTGTGTGACGCAGGACCTGGCAGTGTGGGGCAGCTGCAGTTGTATCTTAGAAGTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| 3UTR-3UTR GCA 90 bp | CTGAGACAATCCCAGGCATATTCTTCTTCTAATTCCCATGAAAGACTCACTTCTGCAGCTGCCCCACACTaGCAGGTCCTGCGTCACACA | + |
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Preference number: 2 (lower is better) Translates to: LRQSQAYSSSNSHERLTSAAAPH*QVLRHT Trigger: TGTGTGACGCAGGACCTGGCAGTGTGGGGCAGCTGC...AGAAGTGAGTCTTTCATGGGAATTAGAAGAAGAATATGCCTGGGATTGTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| 3UTR-3UTR CCA 90 bp | GATACAACTGCAGCTGCCCCACACTGCCAGGTCCTGCGTCACACACGCCTTAAACAAACACACCAAGGCTaGTTTTGTCAAATGTTTTAT | + |
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Preference number: 2 (lower is better) Translates to: DTTAAAPHCQVLRHTRLKQTHQG*FCQMFY Trigger: ATAAAACATTTGACAAAACCAGCCTTGGTGTGTTTG...TTTAAGGCGTGTGTGACGCAGGACCTGGCAGTGTGGGGCAGCTGCAGTTGTATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| 3UTR-3UTR GCA 90 bp | GACAATCCCAGGCATATTCTTCTTCTAATTCCCATGAAAGACTCACTTCTAAGATCAGCAGCCAGCAGGTaGCATATCGCATTCAACACA | + |
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Preference number: 2 (lower is better) Translates to: DNPRHILLLIPMKDSLLRSAASR*HIAFNT Trigger: TGTGTTGAATGCGATATGGCACCTGCTGGCTGCTGA...TCTTAGAAGTGAGTCTTTCATGGGAATTAGAAGAAGAATATGCCTGGGATTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| 3UTR-3UTR GCA 90 bp | AAATTCTGTAATCAGCAGCCAGCAGGTGCCATATCGCATTCAACACACCACAGTCCAAGCCCCAATATATaGATTTTAGAAGTTGTACGT | + |
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Preference number: 2 (lower is better) Translates to: KFCNQQPAGAISHSTHHSPSPNI*ILEVVR Trigger: ACGTACAACTTCTAAAATGCATATATTGGGGCTTGG...ACTGTGGTGTGTTGAATGCGATATGGCACCTGCTGGCTGCTGATTACAGAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| 3UTR GCA 72 bp | CCCATGAAAGACTCACTTCTAAGATACAACTGCAGCTaGCCCACACTGCCAGGTCCTGCGTCACACACGCCT | + |
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Preference number: 3 (lower is better) Translates to: PMKDSLLRYNCS*PTLPGPASHTP Trigger: AGGCGTGTGTGACGCAGGACCTGGCAGTGTGGGGCAGCTGCAGTTGTATCTTAGAAGTGAGTCTTTCATGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| 3UTR GCA 72 bp | AAGATACAACTGCAGCTGCCCCACACTGCCAGGTCCTaGGTCACACACGCCTTAAAATTCTGTAATCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: KIQLQLPHTARS*VTHALKFCNQQ Trigger: CTGCTGATTACAGAATTTTAAGGCGTGTGTGACGCAGGACCTGGCAGTGTGGGGCAGCTGCAGTTGTATCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| 3UTR GCA 72 bp | CCAGAGTCATCTGTTCTTCAACCTCTGCAGTATCATTaGTGTCATCTTTCAATAAATGTCCATCTACAAATT | + |
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Preference number: 3 (lower is better) Translates to: PESSVLQPLQYH*CHLSINVHLQI Trigger: AATTTGTAGATGGACATTTATTGAAAGATGACAGCAATGATACTGCAGAGGTTGAAGAACAGATGACTCTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| CDS-3UTR TCA 90 bp | CACCACAGTCAGTCAATACAGACATCCCCAAACACACCAAGGCTGGTTTTGTCACCTTCGTTCCTTTCCTaGTGGTCCACGCACGCACTT | + |
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Preference number: 4 (lower is better) Translates to: HHSQSIQTSPNTPRLVLSPSFLS*WSTHAL Trigger: AAGTGCGTGCGTGGACCATCAGGAAAGGAACGAAGG...TGACAAAACCAGCCTTGGTGTGTTTGGGGATGTCTGTATTGACTGACTGTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| CDS-3UTR GCA 90 bp | AAATTCTGTAATCAGCAGCCAGCAGGTGCCATATCGCATTCAACACACCACAGTTCCAGCAGCCTTGACTaGGTTTTCAGAACCCTCGTC | + |
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Preference number: 4 (lower is better) Translates to: KFCNQQPAGAISHSTHHSSSSLD*VFRTLV Trigger: GACGAGGGTTCTGAAAACGCAGTCAAGGCTGCTGGA...ACTGTGGTGTGTTGAATGCGATATGGCACCTGCTGGCTGCTGATTACAGAATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| CDS-3UTR GCA 90 bp | AGGTGCCATATCGCATTCAACACACCACAGTCAGTCAATACAGACATCCCCAAAGGAAAGCAGGAATCTTaGTTGCTGGTTTATGGTACT | + |
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Preference number: 4 (lower is better) Translates to: RCHIAFNTPQSVNTDIPKGKQES*LLVYGT Trigger: AGTACCATAAACCAGCAAGCAAGATTCCTGCTTTCC...TTTGGGGATGTCTGTATTGACTGACTGTGGTGTGTTGAATGCGATATGGCACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| CDS-3UTR CCA 90 bp | TTAAAATTCTGTAATCAGCAGCCAGCAGGTGCCATATCGCATTCAACACACCACCTAGTTTGTCTAGAATaGGCCCAATCATCTCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: LKFCNQQPAGAISHSTHHLVCLE*AQSSPR Trigger: ACGAGGAGATGATTGGGCCCATTCTAGACAAACTAG...GTGGTGTGTTGAATGCGATATGGCACCTGCTGGCTGCTGATTACAGAATTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| CDS-3UTR TCA 90 bp | AAATTCTGTAATCAGCAGCCAGCAGGTGCCATATCGCATTCAACACACCACAGTTTCCTTCAACATGCGTaGTATCATCGTCTTCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: KFCNQQPAGAISHSTHHSFLQHA*YHRLQK Trigger: CTTTTGAAGACGATGATATCACGCATGTTGAAGGAA...ACTGTGGTGTGTTGAATGCGATATGGCACCTGCTGGCTGCTGATTACAGAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| CDS CCA 90 bp | TCTTGTCGCCTCCCCTCACGGCCACCTTCTCTAGTTTGTCTAGAATaGGCCCAATCATCTCCTCGTCCTTCAGCTGGAGCTCCTCGTGAA | + |
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Preference number: 5 (lower is better) Translates to: SCRLPSRPPSLVCLE*AQSSPRPSAGAPRE Trigger: TTCACGAGGAGCTCCAGCTGAAGGACGAGGAGATGATTGGGCCCATTCTAGACAAACTAGAGAAGGTGGCCGTGAGGGGAGGCGACAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028517.13 ENSMUST00000100015.6 ENSMUST00000112055.8 |
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| CDS-3UTR CAA 90 bp | TCTGTAATCAGCAGCCAGCAGGTGCCATATCGCATTCAACACACCACAGTCAGTAATATAATTCCTGCCTaGTTGTCTGTATTTTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: SVISSQQVPYRIQHTTVSNIIPA*LSVFSS Trigger: GCTGGAAAATACAGACAACAAGGCAGGAATTATATT...ACTGACTGTGGTGTGTTGAATGCGATATGGCACCTGCTGGCTGCTGATTACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028517.13 |
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| CDS CCA 72 bp | CTCCCCTCACGGCCACCTTCTCTAGTTTGTCTAGAATaGGCCCAATCATCTCCTCGTCCTTCAGCTGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: LPSRPPSLVCLE*AQSSPRPSAGA Trigger: AGCTCCAGCTGAAGGACGAGGAGATGATTGGGCCCATTCTAGACAAACTAGAGAAGGTGGCCGTGAGGGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028517.13 ENSMUST00000100015.6 ENSMUST00000112055.8 |
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| CDS CAA 72 bp | ACTTTGCACATTATGTCATACTCGGGCTTCAGTTTCTaGTCGCCTCCCCTCACGGCCACCTTCTCTAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: TLHIMSYSGFSF*SPPLTATFSSL Trigger: CAAACTAGAGAAGGTGGCCGTGAGGGGAGGCGACAAGAAACTGAAGCCCGAGTATGACATAATGTGCAAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028517.13 ENSMUST00000100015.6 ENSMUST00000112055.8 |
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| CDS CAA 90 bp | CAAGACTTGACTTTGCACATTATGTCATACTCGGGCTTCAGTTTCTaGTCGCCTCCCCTCACGGCCACCTTCTCTAGTTTGTCTAGAATG | + |
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Preference number: 6 (lower is better) Translates to: QDLTLHIMSYSGFSF*SPPLTATFSSLSRM Trigger: CATTCTAGACAAACTAGAGAAGGTGGCCGTGAGGGGAGGCGACAAGAAACTGAAGCCCGAGTATGACATAATGTGCAAAGTCAAGTCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028517.13 ENSMUST00000100015.6 ENSMUST00000112055.8 |
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| CDS GCA 72 bp | GAAAGATACACTTCTATGATCATCGTCCTCATGATGTaGACTAGTATACCATCGCCACTTGATAAGAACTTG | + |
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Preference number: 6 (lower is better) Translates to: ERYTSMIIVLMM*TSIPSPLDKNL Trigger: CAAGTTCTTATCAAGTGGCGATGGTATACTAGTGCACATCATGAGGACGATGATCATAGAAGTGTATCTTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100015.6 |
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