RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OGN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021390

Ensembl transcript IDs: ENSMUST00000021822.7

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GTTGTCCCTTTCCTTGGGCTAAGTGAGAAATGCAGTGAAGTAGCTGCCTTGACAGCTTTGCACAGGTTCTaGAACCTCTGTCTTAAATGC +
Preference number: 2 (lower is better)
Translates to: VVPFLGLSEKCSEVAALTALHRF*NLCLKC
Trigger: GCATTTAAGACAGAGGTTCCAGAACCTGTGCAAAGC...TGTCAAGGCAGCTACTTCACTGCATTTCTCACTTAGCCCAAGGAAAGGGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CCA 90 bp GATGCTTTAATGAAAAGTTTCATCACCCTTAACAGAGGAGACAGGGGTCAATCTTCAGTGGAAGGTCACTaGGAGCACTTGGCTTTGCAC +
Preference number: 2 (lower is better)
Translates to: DALMKSFITLNRGDRGQSSVEGH*EHLALH
Trigger: GTGCAAAGCCAAGTGCTCCCAGTGACCTTCCACTGA...AGATTGACCCCTGTCTCCTCTGTTAAGGGTGATGAAACTTTTCATTAAAGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR TCA 90 bp TCTGCTTTACAAAGAATGCTGATGAATCAGAGTCAGTGGAAGGTCACTGGGAGCCACAGTATTTTGTTTTaGACTAAGAGATTCAGGCTG +
Preference number: 2 (lower is better)
Translates to: SALQRMLMNQSQWKVTGSHSILF*TKRFRL
Trigger: CAGCCTGAATCTCTTAGTTCAAAACAAAATACTGTG...GCTCCCAGTGACCTTCCACTGACTCTGATTCATCAGCATTCTTTGTAAAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR TCA 90 bp CTTGGTGAGCGTTCAGTCACAGAGAAAATGAGTCATGGACACAAAATAATACAGGTGAACATATACAGGTaGAGCTGCACACAGCACAAT +
Preference number: 2 (lower is better)
Translates to: LGERSVTEKMSHGHKIIQVNIYR*SCTQHN
Trigger: ATTGTGCTGTGTGCAGCTTCACCTGTATATGTTCAC...CTGTATTATTTTGTGTCCATGACTCATTTTCTCTGTGACTGAACGCTCACCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR GCA 90 bp GATGCTTTAATGAAAAGTTTCATCACCCTTAACAGAGGAGACAGGGGTCAATCTCTGGAAATGTTTGCTTaGGTGTGTTGTCCCTTTCCT +
Preference number: 2 (lower is better)
Translates to: DALMKSFITLNRGDRGQSLEMFA*VCCPFP
Trigger: AGGAAAGGGACAACACACGCAAGCAAACATTTCCAG...AGATTGACCCCTGTCTCCTCTGTTAAGGGTGATGAAACTTTTCATTAAAGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CCA 90 bp GATGCTTTAATGAAAAGTTTCATCACCCTTAACAGAGGAGACAGGGGTCAATCTCTGCACACAGCACAATaGTGTAGACTTTGTTTTCAT +
Preference number: 2 (lower is better)
Translates to: DALMKSFITLNRGDRGQSLHTAQ*CRLCFH
Trigger: ATGAAAACAAAGTCTACACCATTGTGCTGTGTGCAG...AGATTGACCCCTGTCTCCTCTGTTAAGGGTGATGAAACTTTTCATTAAAGCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CCA 90 bp GAACATATACAGGTGAAGCTGCACACAGCACAATGGTGTAGACTTTGTTTTCATAAATTTTCCCTTCTCTaGAAATGTTTGCTTGCGTGT +
Preference number: 2 (lower is better)
Translates to: EHIQVKLHTAQWCRLCFHKFSLL*KCLLAC
Trigger: ACACGCAAGCAAACATTTCCAGAGAAGGGAAAATTT...ATGAAAACAAAGTCTACACCATTGTGCTGTGTGCAGCTTCACCTGTATATGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR GCA 90 bp GAACATATACAGGTGAAGCTGCACACAGCACAATGGTGTAGACTTTGTTTTCATGTCTGTGTAAAAGCATaGTATTTAGATAGTGGTTTG +
Preference number: 2 (lower is better)
Translates to: EHIQVKLHTAQWCRLCFHVCVKA*YLDSGL
Trigger: CAAACCACTATCTAAATAGCATGCTTTTACACAGAC...ATGAAAACAAAGTCTACACCATTGTGCTGTGTGCAGCTTCACCTGTATATGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR GCA 72 bp CAGAGTCAGTGGAAGGTCACTGGGAGCACTTGGCTTTaGACAGGTTCTGGAACCTCTGTCTTAAATGCTTTT +
Preference number: 3 (lower is better)
Translates to: QSQWKVTGSTWL*TGSGTSVLNAF
Trigger: AAAAGCATTTAAGACAGAGGTTCCAGAACCTGTGCAAAGCCAAGTGCTCCCAGTGACCTTCCACTGACTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CAA 90 bp GAACATATACAGGTGAAGCTGCACACAGCACAATGGTGTAGACTTTGTTTTCATTGGGAGCACTTGGCTTaGCACAGGTTCTGGAACCTC +
Preference number: 3 (lower is better)
Translates to: EHIQVKLHTAQWCRLCFHWEHLA*HRFWNL
Trigger: GAGGTTCCAGAACCTGTGCAAAGCCAAGTGCTCCCA...ATGAAAACAAAGTCTACACCATTGTGCTGTGTGCAGCTTCACCTGTATATGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CAA 90 bp GATGCTTTAATGAAAAGTTTCATCACCCTTAACAGAGGAGACAGGGGTCAATCTTCTGGAAATGTTTGCTaGCGTGTGTTGTCCCTTTCC +
Preference number: 3 (lower is better)
Translates to: DALMKSFITLNRGDRGQSSGNVC*RVLSLS
Trigger: GGAAAGGGACAACACACGCAAGCAAACATTTCCAGA...AGATTGACCCCTGTCTCCTCTGTTAAGGGTGATGAAACTTTTCATTAAAGCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CAA 90 bp GATGCTTTAATGAAAAGTTTCATCACCCTTAACAGAGGAGACAGGGGTCAATCTCTTCTCTGGAAATGTTaGCTTGCGTGTGTTGTCCCT +
Preference number: 3 (lower is better)
Translates to: DALMKSFITLNRGDRGQSLLWKC*LACVVP
Trigger: AGGGACAACACACGCAAGCAAACATTTCCAGAGAAG...AGATTGACCCCTGTCTCCTCTGTTAAGGGTGATGAAACTTTTCATTAAAGCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CAA 90 bp CTTGGTGAGCGTTCAGTCACAGAGAAAATGAGTCATGGACACAAAATAATACAGAGGGGTCAATCTGGGTaGGAACAAAACCACCAAACT +
Preference number: 3 (lower is better)
Translates to: LGERSVTEKMSHGHKIIQRGQSG*EQNHQT
Trigger: AGTTTGGTGGTTTTGTTCCAACCCAGATTGACCCCT...CTGTATTATTTTGTGTCCATGACTCATTTTCTCTGTGACTGAACGCTCACCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR TCA 72 bp TCTTGGGCTGGAATGAGCATATTTAGTTTGTTTGGGTaGACATATACAGGTGAAGCTGCACACAGCACAATG +
Preference number: 3 (lower is better)
Translates to: SWAGMSIFSLFG*TYTGEAAHSTM
Trigger: CATTGTGCTGTGTGCAGCTTCACCTGTATATGTTCACCCAAACAAACTAAATATGCTCATTCCAGCCCAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CAA 90 bp GATGCTTTAATGAAAAGTTTCATCACCCTTAACAGAGGAGACAGGGGTCAATCTAGTGAAGTAGCTGCCTaGACAGAAAGTACATTTCTG +
Preference number: 3 (lower is better)
Translates to: DALMKSFITLNRGDRGQSSEVAA*TESTFL
Trigger: CAGAAATGTACTTTCTGTCAAGGCAGCTACTTCACT...AGATTGACCCCTGTCTCCTCTGTTAAGGGTGATGAAACTTTTCATTAAAGCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR-3UTR CAA 90 bp CTTGGTGAGCGTTCAGTCACAGAGAAAATGAGTCATGGACACAAAATAATACAGGCATATTTAGTTTGTTaGGGTGAACATATACAGGTG +
Preference number: 3 (lower is better)
Translates to: LGERSVTEKMSHGHKIIQAYLVC*GEHIQV
Trigger: CACCTGTATATGTTCACCCAAACAAACTAAATATGC...CTGTATTATTTTGTGTCCATGACTCATTTTCTCTGTGACTGAACGCTCACCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR GCA 72 bp TACATGTATCTGGAAACCATGGTCATTGAGAAATGGTaGTCTTGGGCTGGAATGAGCATATTTAGTTTGTTT +
Preference number: 3 (lower is better)
Translates to: YMYLETMVIEKW*SWAGMSIFSLF
Trigger: AAACAAACTAAATATGCTCATTCCAGCCCAAGAGCACCATTTCTCAATGACCATGGTTTCCAGATACATGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR CCA 72 bp TATTACATGTATCTGGAAACCATGGTCATTGAGAAATaGTGCTCTTGGGCTGGAATGAGCATATTTAGTTTG +
Preference number: 3 (lower is better)
Translates to: YYMYLETMVIEK*CSWAGMSIFSL
Trigger: CAAACTAAATATGCTCATTCCAGCCCAAGAGCACCATTTCTCAATGACCATGGTTTCCAGATACATGTAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR GCA 72 bp CACCTTCCTCTGAAGCTTAGTTTTGGAACTTTAATCTaGATTGTGAGATTGGGTTTTCACTATTACATGTAT +
Preference number: 3 (lower is better)
Translates to: HLPLKLSFGTLI*IVRLGFHYYMY
Trigger: ATACATGTAATAGTGAAAACCCAATCTCACAATGCAGATTAAAGTTCCAAAACTAAGCTTCAGAGGAAGGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR CAA 72 bp TCAGAGTCAGTGGAAGGTCACTGGGAGCACTTGGCTTaGCACAGGTTCTGGAACCTCTGTCTTAAATGCTTT +
Preference number: 4 (lower is better)
Translates to: SESVEGHWEHLA*HRFWNLCLKCF
Trigger: AAAGCATTTAAGACAGAGGTTCCAGAACCTGTGCAAAGCCAAGTGCTCCCAGTGACCTTCCACTGACTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
3UTR CAA 72 bp GATGAATCAGAGTCAGTGGAAGGTCACTGGGAGCACTaGGCTTTGCACAGGTTCTGGAACCTCTGTCTTAAA +
Preference number: 4 (lower is better)
Translates to: DESESVEGHWEH*ALHRFWNLCLK
Trigger: TTTAAGACAGAGGTTCCAGAACCTGTGCAAAGCCAAGTGCTCCCAGTGACCTTCCACTGACTCTGATTCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR GCA 90 bp TTTCACTATTACATGTATCTGGAAACCATGGTCATTGAGAAATGGTGCTCTTGGCAGCTGCGACTGTGGTaGTTGCTGTGTCAGAGGCAC +
Preference number: 4 (lower is better)
Translates to: FHYYMYLETMVIEKWCSWQLRLW*LLCQRH
Trigger: GTGCCTCTGACACAGCAAGCACCACAGTCGCAGCTG...CCAAGAGCACCATTTCTCAATGACCATGGTTTCCAGATACATGTAATAGTGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CCA 90 bp AATGCTGATGAATCAGAGTCAGTGGAAGGTCACTGGGAGCACTTGGCTTTGCACGCAGATAAAACTGTTTaGATGCTTTCCCAGAGCAAT +
Preference number: 4 (lower is better)
Translates to: NADESESVEGHWEHLALHADKTV*MLSQSN
Trigger: ATTGCTCTGGGAAAGCATCCAAACAGTTTTATCTGC...GTGCAAAGCCAAGTGCTCCCAGTGACCTTCCACTGACTCTGATTCATCAGCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CCA 90 bp ATACAGGTGAAGCTGCACACAGCACAATGGTGTAGACTTTGTTTTCATTTCCTACTTTCCCAGAGCAATTaGATTGCCCTCCAGGCGAAT +
Preference number: 4 (lower is better)
Translates to: IQVKLHTAQWCRLCFHFLLSQSN*IALQAN
Trigger: ATTCGCCTGGAGGGCAATCCAATTGCTCTGGGAAAG...TAGGAAATGAAAACAAAGTCTACACCATTGTGCTGTGTGCAGCTTCACCTGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CCA 90 bp TCTGCTTTACAAAGAATGCTGATGAATCAGAGTCAGTGGAAGGTCACTGGGAGCCACACAACAGGCATGTaGGCATTTCATCATTTTCTT +
Preference number: 4 (lower is better)
Translates to: SALQRMLMNQSQWKVTGSHTTGM*AFHHFL
Trigger: AAGAAAATGATGAAATGCCCACATGCCTGTTGTGTG...GCTCCCAGTGACCTTCCACTGACTCTGATTCATCAGCATTCTTTGTAAAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CCA 90 bp TCTGCTTTACAAAGAATGCTGATGAATCAGAGTCAGTGGAAGGTCACTGGGAGCGGAAGTCTTAGTAGTTaGTTTTCAGCAAGTGTAAGT +
Preference number: 4 (lower is better)
Translates to: SALQRMLMNQSQWKVTGSGSLSS*FSASVS
Trigger: ACTTACACTTGCTGAAAACCAACTACTAAGACTTCC...GCTCCCAGTGACCTTCCACTGACTCTGATTCATCAGCATTCTTTGTAAAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CCA 90 bp GAACATATACAGGTGAAGCTGCACACAGCACAATGGTGTAGACTTTGTTTTCATTTCCTTTGGCAATGGTaGTACAGCATCAATGTCAAC +
Preference number: 4 (lower is better)
Translates to: EHIQVKLHTAQWCRLCFHFLWQW*YSINVN
Trigger: GTTGACATTGATGCTGTACCACCATTGCCAAAGGAA...ATGAAAACAAAGTCTACACCATTGTGCTGTGTGCAGCTTCACCTGTATATGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR GCA 90 bp ACTATTACATGTATCTGGAAACCATGGTCATTGAGAAATGGTGCTCTTGGGCTGTGGTTTCTTCAGAATTaGCTGTTGCATACTCATAGT +
Preference number: 4 (lower is better)
Translates to: TITCIWKPWSLRNGALGLWFLQN*LLHTHS
Trigger: ACTATGAGTATGCAACAGGCAATTCTGAAGAAACCA...CAGCCCAAGAGCACCATTTCTCAATGACCATGGTTTCCAGATACATGTAATAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR GCA 90 bp GATGCTTTAATGAAAAGTTTCATCACCCTTAACAGAGGAGACAGGGGTCAATCTATAAAACTGTTTGGATaGTTTCCCAGAGCAATTGGA +
Preference number: 4 (lower is better)
Translates to: DALMKSFITLNRGDRGQSIKLFG*FPRAIG
Trigger: TCCAATTGCTCTGGGAAAGCATCCAAACAGTTTTAT...AGATTGACCCCTGTCTCCTCTGTTAAGGGTGATGAAACTTTTCATTAAAGCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS TCA 90 bp TTTGGTTTCTTCAGAATTGCCTGTTGCATACTCATAGTTAACATGTaGGTCCAGCTGCGACTGTGGTGCTTGCTGTGTCAGAGGCACGAA +
Preference number: 5 (lower is better)
Translates to: FGFFRIACCILIVNM*VQLRLWCLLCQRHE
Trigger: TTCGTGCCTCTGACACAGCAAGCACCACAGTCGCAGCTGGACTCACATGTTAACTATGAGTATGCAACAGGCAATTCTGAAGAAACCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CAA 90 bp AATGCTGATGAATCAGAGTCAGTGGAAGGTCACTGGGAGCACTTGGCTTTGCACCAAGTCTTCTTAGGTTaGGCATGTCTGCAAAATCCT +
Preference number: 5 (lower is better)
Translates to: NADESESVEGHWEHLALHQVFLG*ACLQNP
Trigger: AGGATTTTGCAGACATGCCAAACCTAAGAAGACTTG...GTGCAAAGCCAAGTGCTCCCAGTGACCTTCCACTGACTCTGATTCATCAGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CAA 90 bp ATACAGGTGAAGCTGCACACAGCACAATGGTGTAGACTTTGTTTTCATTTCCTACCCAGAGCAATTGGATaGCCCTCCAGGCGAATCTCT +
Preference number: 5 (lower is better)
Translates to: IQVKLHTAQWCRLCFHFLPRAIG*PSRRIS
Trigger: AGAGATTCGCCTGGAGGGCAATCCAATTGCTCTGGG...TAGGAAATGAAAACAAAGTCTACACCATTGTGCTGTGTGCAGCTTCACCTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CAA 90 bp TTTCACTATTACATGTATCTGGAAACCATGGTCATTGAGAAATGGTGCTCTTGGGCTTTCCCAGAGCAATaGGATTGCCCTCCAGGCGAA +
Preference number: 5 (lower is better)
Translates to: FHYYMYLETMVIEKWCSWAFPEQ*DCPPGE
Trigger: TTCGCCTGGAGGGCAATCCAATTGCTCTGGGAAAGC...CCAAGAGCACCATTTCTCAATGACCATGGTTTCCAGATACATGTAATAGTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CAA 90 bp TTTCACTATTACATGTATCTGGAAACCATGGTCATTGAGAAATGGTGCTCTTGGGATAAGCTGATTCCTTaGGCAATGGTGGTACAGCAT +
Preference number: 5 (lower is better)
Translates to: FHYYMYLETMVIEKWCSWDKLIP*AMVVQH
Trigger: ATGCTGTACCACCATTGCCAAAGGAATCAGCTTATC...CCAAGAGCACCATTTCTCAATGACCATGGTTTCCAGATACATGTAATAGTGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CAA 90 bp CTTGGTGAGCGTTCAGTCACAGAGAAAATGAGTCATGGACACAAAATAATACAGCGAGTGTCATTAGCCTaGCAGAATGTATCATCTGTA +
Preference number: 5 (lower is better)
Translates to: LGERSVTEKMSHGHKIIQRVSLA*QNVSSV
Trigger: TACAGATGATACATTCTGCAAGGCTAATGACACTCG...CTGTATTATTTTGTGTCCATGACTCATTTTCTCTGTGACTGAACGCTCACCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS-3UTR CAA 90 bp GATGCTTTAATGAAAAGTTTCATCACCCTTAACAGAGGAGACAGGGGTCAATCTATGTCTGCAAAATCCTaGGCAGTCAGCTTTTTAATT +
Preference number: 5 (lower is better)
Translates to: DALMKSFITLNRGDRGQSMSAKS*AVSFLI
Trigger: AATTAAAAAGCTGACTGCCAAGGATTTTGCAGACAT...AGATTGACCCCTGTCTCCTCTGTTAAGGGTGATGAAACTTTTCATTAAAGCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS CCA 72 bp GCAGATAAAACTGTTTGGATGCTTTCCCAGAGCAATTaGATTGCCCTCCAGGCGAATCTCTTCAATTCGCTC +
Preference number: 6 (lower is better)
Translates to: ADKTVWMLSQSN*IALQANLFNSL
Trigger: GAGCGAATTGAAGAGATTCGCCTGGAGGGCAATCCAATTGCTCTGGGAAAGCATCCAAACAGTTTTATCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS CAA 72 bp ATAAAACTGTTTGGATGCTTTCCCAGAGCAATTGGATaGCCCTCCAGGCGAATCTCTTCAATTCGCTCCCGA +
Preference number: 6 (lower is better)
Translates to: IKLFGCFPRAIG*PSRRISSIRSR
Trigger: TCGGGAGCGAATTGAAGAGATTCGCCTGGAGGGCAATCCAATTGCTCTGGGAAAGCATCCAAACAGTTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS TCA 72 bp CTTTTTAATTTTGTTGAATCGTGCATAAAGATAAGCTaGTTCCTTTGGCAATGGTGGTACAGCATCAATGTC +
Preference number: 6 (lower is better)
Translates to: LFNFVESCIKIS*FLWQWWYSINV
Trigger: GACATTGATGCTGTACCACCATTGCCAAAGGAATCAGCTTATCTTTATGCACGATTCAACAAAATTAAAAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7
CDS CAA 72 bp CACAACAGGCATGTGGGCATTTCATCATTTTCTTTCTaGGTTGGTAATGATGGTATAACTTCATCTTTTTGT +
Preference number: 6 (lower is better)
Translates to: HNRHVGISSFSF*VGNDGITSSFC
Trigger: ACAAAAAGATGAAGTTATACCATCATTACCAACCAAGAAAGAAAATGATGAAATGCCCACATGCCTGTTGTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021822.7