Pregenerated sensors for OFD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040586Ensembl transcript IDs: ENSMUST00000049501.9
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAATACATGCCATGGCTAGAGGACTACATGGGCCAAGTGTGGTGGTaGATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTC | + |
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Preference number: 1 (lower is better) Translates to: EYMPWLEDYMGQVWW*MPSKGGRGRRICDF Trigger: GAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGCACCACCACACTTGGCCCATGTAGTCCTCTAGCCATGGCATGTATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR CCA 90 bp | GTAACAAAGTGCTGGCAAGTTCAGTGCCTGGTAAGGGTCAGGCCTTaGTTTGTACAGTGTCAAGTTCTTGGTACTTCTGAAAGGGATGAC | + |
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Preference number: 1 (lower is better) Translates to: VTKCWQVQCLVRVRP*FVQCQVLGTSERDD Trigger: GTCATCCCTTTCAGAAGTACCAAGAACTTGACACTGTACAAACCAAGGCCTGACCCTTACCAGGCACTGAACTTGCCAGCACTTTGTTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR GCA 90 bp | TTCTGGAGACTGAGAATCTCAGTAACAAAGTGCTGGCAAGTTCAGTaGCTGGTAAGGGTCAGGCCTTGGTTTGTACAGTGTCAAGTTCTT | + |
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Preference number: 1 (lower is better) Translates to: FWRLRISVTKCWQVQ*LVRVRPWFVQCQVL Trigger: AAGAACTTGACACTGTACAAACCAAGGCCTGACCCTTACCAGGCACTGAACTTGCCAGCACTTTGTTACTGAGATTCTCAGTCTCCAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR GCA 90 bp | GTTTCATTTTTACAGTTCTGGAGACTGAGAATCTCAGTAACAAAGTaGTGGCAAGTTCAGTGCCTGGTAAGGGTCAGGCCTTGGTTTGTA | + |
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Preference number: 1 (lower is better) Translates to: VSFLQFWRLRISVTK*WQVQCLVRVRPWFV Trigger: TACAAACCAAGGCCTGACCCTTACCAGGCACTGAACTTGCCAGCACTTTGTTACTGAGATTCTCAGTCTCCAGAACTGTAAAAATGAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR-3UTR GCA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGAGGCCAAGTGTGGTGGTaGATGCCTTCAAAGGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGGQVWW*MPSKGG Trigger: GCCTCCCTTTGAAGGCATGCACCACCACACTTGGCC...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR-3UTR CCA 90 bp | CATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGTACATGGGCCAAGTGTaGTGGTGCATGCCTTCAAAG | + |
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Preference number: 2 (lower is better) Translates to: HYNEKICVHVQGQNCAGRYMGQV*WCMPSK Trigger: CTTTGAAGGCATGCACCACCACACTTGGCCCATGTA...CCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR CCA 72 bp | ATGCCATGGCTAGAGGACTACATGGGCCAAGTGTGGTaGTGCATGCCTTCAAAGGGAGGCAGAGGCAGGCGA | + |
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Preference number: 3 (lower is better) Translates to: MPWLEDYMGQVW*CMPSKGGRGRR Trigger: TCGCCTGCCTCTGCCTCCCTTTGAAGGCATGCACCACCACACTTGGCCCATGTAGTCCTCTAGCCATGGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR-3UTR CAA 90 bp | GCCATGGCTAGAGGACTACATGGGCCAAGTGTGGTGGTGCATGCCTTCAAAGGGGGCTTCACAGAGATCTaGTCTCCAAAAATAAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: AMARGLHGPSVVVHAFKGGFTEI*SPKIKG Trigger: CCCTTTTATTTTTGGAGACAAGATCTCTGTGAAGCC...CCCTTTGAAGGCATGCACCACCACACTTGGCCCATGTAGTCCTCTAGCCATGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR CCA 72 bp | CAGTTCTGGAGACTGAGAATCTCAGTAACAAAGTGCTaGCAAGTTCAGTGCCTGGTAAGGGTCAGGCCTTGG | + |
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Preference number: 3 (lower is better) Translates to: QFWRLRISVTKC*QVQCLVRVRPW Trigger: CCAAGGCCTGACCCTTACCAGGCACTGAACTTGCCAGCACTTTGTTACTGAGATTCTCAGTCTCCAGAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR GCA 72 bp | CTGAGAATCTCAGTAACAAAGTGCTGGCAAGTTCAGTaGCTGGTAAGGGTCAGGCCTTGGTTTGTACAGTGT | + |
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Preference number: 3 (lower is better) Translates to: LRISVTKCWQVQ*LVRVRPWFVQC Trigger: ACACTGTACAAACCAAGGCCTGACCCTTACCAGGCACTGAACTTGCCAGCACTTTGTTACTGAGATTCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR GCA 72 bp | TTACAGTTCTGGAGACTGAGAATCTCAGTAACAAAGTaGTGGCAAGTTCAGTGCCTGGTAAGGGTCAGGCCT | + |
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Preference number: 3 (lower is better) Translates to: LQFWRLRISVTK*WQVQCLVRVRP Trigger: AGGCCTGACCCTTACCAGGCACTGAACTTGCCAGCACTTTGTTACTGAGATTCTCAGTCTCCAGAACTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| 3UTR CCA 72 bp | TGCTGGCAAGTTCAGTGCCTGGTAAGGGTCAGGCCTTaGTTTGTACAGTGTCAAGTTCTTGGTACTTCTGAA | + |
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Preference number: 3 (lower is better) Translates to: CWQVQCLVRVRP*FVQCQVLGTSE Trigger: TTCAGAAGTACCAAGAACTTGACACTGTACAAACCAAGGCCTGACCCTTACCAGGCACTGAACTTGCCAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | GCCATGGCTAGAGGACTACATGGGCCAAGTGTGGTGGTGCATGCCTTCAAAGGGAGATGGAGGACTCTTTaGCGGCTGAGGGCTCGTAGA | + |
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Preference number: 4 (lower is better) Translates to: AMARGLHGPSVVVHAFKGRWRTL*RLRARR Trigger: TCTACGAGCCCTCAGCCGGCAAAGAGTCCTCCATCT...CCCTTTGAAGGCATGCACCACCACACTTGGCCCATGTAGTCCTCTAGCCATGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | GGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCAGGGCTTCACAGAGCTTTTATCTTCACTGTaGGGTGCCATCTTGCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: GGRGRRICDFKASQGFTELLSSL*GAILPL Trigger: GAGCGGCAAGATGGCACCCCACAGTGAAGATAAAAG...CTCTGTGAAGCCCTGGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | GGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCAGGGCTTCACAGAGACAGGCATTTTGCTCTaGAAGACCAGAGAAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GGRGRRICDFKASQGFTETGILL*KTREAV Trigger: CACAGCTTCTCTGGTCTTCCAGAGCAAAATGCCTGT...CTCTGTGAAGCCCTGGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCAAACCACACTGCCCATaGATGCTTTGGACATATCAC | + |
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Preference number: 4 (lower is better) Translates to: ACLQREAEAGESVTSRPAKPHCP*MLWTYH Trigger: GTGATATGTCCAAAGCATTCATGGGCAGTGTGGTTT...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCTGTCAAGAAGAGGGCTaGAGGAAGTCATGTGTAATC | + |
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Preference number: 4 (lower is better) Translates to: ACLQREAEAGESVTSRPACQEEG*RKSCVI Trigger: GATTACACATGACTTCCTCCAGCCCTCTTCTTGACA...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | GGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCAGGGCTTCACAGAGAGAGAATTCTTCTCCTaGGAAATGAGGGCTTCATTT | + |
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Preference number: 4 (lower is better) Translates to: GGRGRRICDFKASQGFTEREFFS*EMRASF Trigger: AAATGAAGCCCTCATTTCTCAGGAGAAGAATTCTCT...CTCTGTGAAGCCCTGGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCCACACTGCCCATGAATaGTTTGGACATATCACTCAT | + |
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Preference number: 4 (lower is better) Translates to: ACLQREAEAGESVTSRPAHTAHE*FGHITH Trigger: ATGAGTGATATGTCCAAAGCATTCATGGGCAGTGTG...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCTCTTGCCGTTCATTATaGCTTTGTTCTTCTCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: ACLQREAEAGESVTSRPASCRSL*LCSSLC Trigger: GCAGAGAGAAGAACAAAGGCATAATGAACGGCAAGA...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | GCCATGGCTAGAGGACTACATGGGCCAAGTGTGGTGGTGCATGCCTTCAAAGGGATGAGTCTTGAAGACTaGGTAGCCACAGCAAAATCT | + |
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Preference number: 4 (lower is better) Translates to: AMARGLHGPSVVVHAFKGMSLED*VATAKS Trigger: AGATTTTGCTGTGGCTACTCAGTCTTCAAGACTCAT...CCCTTTGAAGGCATGCACCACCACACTTGGCCCATGTAGTCCTCTAGCCATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | GGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCAGGGCTTCACAGAGATTTTCACAATGAGCTaGTTTGTCTTTCTGGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GGRGRRICDFKASQGFTEIFTMS*FVFLVL Trigger: CAAGACCAGAAAGACAAATCAGCTCATTGTGAAAAT...CTCTGTGAAGCCCTGGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | GTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGCCTGGAAGGTGACCATCTCCATCTTCAGTaGCTCTTCAATCATCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: VEQEAHSLNLANASLEGDHLHLQ*LFNHPP Trigger: CGGAGGATGATTGAAGAGTCACTGAAGATGGAGATG...GTCACCTTCCAGGCTTGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | GTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGCCTGGAAGGTGACTATGCTTCTGAGAGCTaGCACCGAGTTTACAGATGG | + |
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Preference number: 4 (lower is better) Translates to: VEQEAHSLNLANASLEGDYASES*HRVYRW Trigger: CCATCTGTAAACTCGGTGGCAGCTCTCAGAAGCATA...GTCACCTTCCAGGCTTGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | GCCATGGCTAGAGGACTACATGGGCCAAGTGTGGTGGTGCATGCCTTCAAAGGGTCCTTTAGCTCCAGTTaGTACTTTAGCAGTTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: AMARGLHGPSVVVHAFKGSFSSS*YFSSSV Trigger: AACTGAACTGCTAAAGTACCAACTGGAGCTAAAGGA...CCCTTTGAAGGCATGCACCACCACACTTGGCCCATGTAGTCCTCTAGCCATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | CATTATAGCCCAAGTGTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAGGAACAGGTGACGCCTaGGCTGTTCTCTCAGGACAA | + |
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Preference number: 4 (lower is better) Translates to: HYSPSVEQEAHSLNLANAGTGDA*AVLSGQ Trigger: TTGTCCTGAGAGAACAGCCCAGGCGTCACCTGTTCC...TGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCACACTTGGGCTATAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | CATGTCCAGGGACAAAACTGTGCTGGGAGGATGGCTTCCTGTTTTACACATTATAGGGGAAGCAGCAGGTaGTGCAGAAACTCTGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: HVQGQNCAGRMASCFTHYRGSSR*CRNSVK Trigger: CTTGACAGAGTTTCTGCATCACCTGCTGCTTCCCCT...ATAATGTGTAAAACAGGAAGCCATCCTCCCAGCACAGTTTTGTCCCTGGACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | GCCATGGCTAGAGGACTACATGGGCCAAGTGTGGTGGTGCATGCCTTCAAAGGGTTGCTTGTCCACATTTaGAAGCTCACTTTTATCTTG | + |
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Preference number: 4 (lower is better) Translates to: AMARGLHGPSVVVHAFKGLLVHI*KLTFIL Trigger: CAAGATAAAAGTGAGCTTTCAAATGTGGACAAGCAA...CCCTTTGAAGGCATGCACCACCACACTTGGCCCATGTAGTCCTCTAGCCATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCTCATCTTTCAAAGATTaGTTGTCCACATTTGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: ACLQREAEAGESVTSRPASSFKD*LSTFES Trigger: GCTTTCAAATGTGGACAAGCAATCTTTGAAAGATGA...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCGATTCTTCCTGTCTCTaGTGGATAATTTTCATGTAT | + |
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Preference number: 4 (lower is better) Translates to: ACLQREAEAGESVTSRPADSSCL*WIIFMY Trigger: ATACATGAAAATTATCCAGCAGAGACAGGAAGAATC...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCGTTCCATCTGAAAGGTaGTTCAAATTTCTCATCTTT | + |
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Preference number: 4 (lower is better) Translates to: ACLQREAEAGESVTSRPAVPSER*FKFLIF Trigger: AAAGATGAGAAATTTGAACCACCTTTCAGATGGAAC...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | CAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGCCTGGAAGGTGACAAGATAGAGGTGGCTGAGTTATaGGGTCTAGGAGTCGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: QEAHSLNLANASLEGDKIEVAEL*GLGVVS Trigger: ACTTACGACTCCTAGACCGCATAACTCAGCCACCTC...TATCTTGTCACCTTCCAGGCTTGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | CATTATAGCCCAAGTGTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGACCAGAGAAGCTGTaGCTAGATGGAACAGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: HYSPSVEQEAHSLNLANARPEKL*LDGTGD Trigger: GTCACCTGTTCCATCTAGGCACAGCTTCTCTGGTCT...TGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCACACTTGGGCTATAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | CAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGCCTGGAAGGTGACAAGATACTTCTCGATTTTGGATaGGGTGTAGAGGAGAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: QEAHSLNLANASLEGDKILLDFG*GVEERR Trigger: ACGCCTCTCCTCTACACCCCATCCAAAATCGAGAAG...TATCTTGTCACCTTCCAGGCTTGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | CATGTCCAGGGACAAAACTGTGCTGGGAGGATGGCTTCCTGTTTTACACATTATATGTCACCAGCAGGGTaGAGTCCTTCTGCTTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: HVQGQNCAGRMASCFTHYMSPAG*SPSASN Trigger: GTTTGAAGCAGAAGGACTCCACCCTGCTGGTGACAT...ATAATGTGTAAAACAGGAAGCCATCCTCCCAGCACAGTTTTGTCCCTGGACATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | GTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGCCTGGAAGGTGACCTCTTCTTTCAGTTGTaGGTAATCACTCATCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: VEQEAHSLNLANASLEGDLFFQL*VITHLS Trigger: AGAGAGATGAGTGATTACTCACAACTGAAAGAAGAG...GTCACCTTCCAGGCTTGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | GTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGCCTGGAAGGTGACGTTTCAGTTTGTCTCTaGTATAAACAGGCATTTTGC | + |
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Preference number: 4 (lower is better) Translates to: VEQEAHSLNLANASLEGDVSVCL*YKQAFC Trigger: GCAAAATGCCTGTTTATATCAGAGACAAACTGAAAC...GTCACCTTCCAGGCTTGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | CATTATAGCCCAAGTGTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAGCTCTTATCTGCATTTaGTTCTTCCTGTCTCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: HYSPSVEQEAHSLNLANAALICI*FFLSLL Trigger: CAGCAGAGACAGGAAGAATCAAATGCAGATAAGAGC...TGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCACACTTGGGCTATAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | CATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGGGCTGGGAAATGTGGTaGTTGTCTGAGTTTCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: HYNEKICVHVQGQNCAGRGWEMW*LSEFPH Trigger: ATGCGGAAACTCAGACAAGCACCACATTTCCCAGCC...CCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | GTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGCCTGGAAGGTGACCTTTCAAATTCATTCTaGAACTCAGCCAATTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: VEQEAHSLNLANASLEGDLSNSF*NSANSF Trigger: AAAGGAATTGGCTGAGTTCCAGAATGAATTTGAAAG...GTCACCTTCCAGGCTTGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGATCAAGAGCCTGCCTATaGGTTTCAAAGTCCTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGSRACL*VSKSLC Trigger: GCACAAGGACTTTGAAACTCATAGGCAGGCTCTTGA...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGAAGGCCACTCAGGGAATaGATCAGAGAGTGTTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGRPLRE*IRECFG Trigger: TCCAAAACACTCTCTGATTCATTCCCTGAGTGGCCT...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | CATTATAGCCCAAGTGTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCATCATCTGGTTCTTCATaGGAAAATCCTGGAGAACTT | + |
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Preference number: 4 (lower is better) Translates to: HYSPSVEQEAHSLNLANASSGSS*ENPGEL Trigger: AAGTTCTCCAGGATTTTCTCATGAAGAACCAGATGA...TGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCACACTTGGGCTATAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGATCGCTCCTTCAGCTCTaGTTCTCTACCTCTAAGCAA | + |
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Preference number: 4 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGSLLQL*FSTSKQ Trigger: TTGCTTAGAGGTAGAGAAGCAGAGCTGAAGGAGCGA...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | CATTATAGCCCAAGTGTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAGGAACTAGCTTCTGTTaGTGTATTTACATAAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: HYSPSVEQEAHSLNLANAGTSFC*CIYIRW Trigger: CCACCTTATGTAAATACAGCAACAGAAGCTAGTTCC...TGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCACACTTGGGCTATAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | CATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGGTTCTTCTCTCTGCCTaGGTTCTTTCATGTGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: HYNEKICVHVQGQNCAGRVLLSA*VLSCEA Trigger: AGCTTCACATGAAAGAACGCAGGCAGAGAGAAGAAC...CCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | CATTATAGCCCAAGTGTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCACTCTCTAAAGCTTCTTaGCGTTCATTATGCCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: HYSPSVEQEAHSLNLANALSKAS*RSLCLC Trigger: ACAAAGGCATAATGAACGGCAAGAAGCTTTAGAGAG...TGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCACACTTGGGCTATAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGATTCCCGTCTCTCAAGTaGCTCAGCCTCACTTTTAAT | + |
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Preference number: 4 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGFPSLK*LSLTFN Trigger: ATTAAAAGTGAGGCTGAGGCACTTGAGAGACGGGAA...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | CATTATAGCCCAAGTGTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCATTCATGAGAAAATCCTaGAGAACTTTCATCCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: HYSPSVEQEAHSLNLANAFMRKS*RTFILV Trigger: GACAAGGATGAAAGTTCTCCAGGATTTTCTCATGAA...TGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCACACTTGGGCTATAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | CATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGTTTTCAATTTCACTCTaGAGCTGTTTCTCAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: HYNEKICVHVQGQNCAGRFSISL*SCFSRA Trigger: GGCTCTTGAGAAACAGCTGCAGAGTGAAATTGAAAA...CCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR GCA 90 bp | CATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGTATAAACAGGCATTTTaGTCTGGAAGACCAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: HYNEKICVHVQGQNCAGRYKQAF*SGRPEK Trigger: CTTCTCTGGTCTTCCAGAGCAAAATGCCTGTTTATA...CCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGATCTTCTTGGAGCTTCTaGGTCAATTCAAAAGTTTCG | + |
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Preference number: 4 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGSSWSF*VNSKVS Trigger: CGAAACTTTTGAATTGACCCAGAAGCTCCAAGAAGA...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR TCA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGATTCTGTAATTCCTTCTaGAAAATCACAAGCTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGFCNSF*KITSSG Trigger: TCCTGAGCTTGTGATTTTTCAGAAGGAATTACAGAA...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CCA 90 bp | GGAGTTTTTGTTTCATTTTTACAGTTCTGGAGACTGAGAATCTCAGTAACAAAGTCATATTCTGCTATCTaGGTCCTTAGCTGTGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: GVFVSFLQFWRLRISVTKSYSAI*VLSCAE Trigger: TTCTGCACAGCTAAGGACCCAGATAGCAGAATATGA...CTTTGTTACTGAGATTCTCAGTCTCCAGAACTGTAAAAATGAAACAAAAACTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CCA 90 bp | TCTGGAAGACCAGAGAAGCTGTGCCTAGATGGAACAGGTGACGCCTaGGCTGTTCTCTCAGGACAAGGACTAGGGGAAGCAGCAGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: SGRPEKLCLDGTGDA*AVLSGQGLGEAAGD Trigger: ATCACCTGCTGCTTCCCCTAGTCCTTGTCCTGAGAGAACAGCCCAGGCGTCACCTGTTCCATCTAGGCACAGCTTCTCTGGTCTTCCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS TCA 90 bp | GGGTGTAGAGGAGAGGCGTGTGGAGGAAGAGGTCCTGCGTGGCCGTaGAACCACACTGCCCATGAATGCTTTGGACATATCACTCATTTC | + |
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Preference number: 5 (lower is better) Translates to: GCRGEACGGRGPAWP*NHTAHECFGHITHF Trigger: GAAATGAGTGATATGTCCAAAGCATTCATGGGCAGTGTGGTTTCACGGCCACGCAGGACCTCTTCCTCCACACGCCTCTCCTCTACACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS TCA 90 bp | ATTTTGCTCTGGAAGACCAGAGAAGCTGTGCCTAGATGGAACAGGTaGCGCCTGGGCTGTTCTCTCAGGACAAGGACTAGGGGAAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ILLWKTREAVPRWNR*RLGCSLRTRTRGSS Trigger: GCTGCTTCCCCTAGTCCTTGTCCTGAGAGAACAGCCCAGGCGTCACCTGTTCCATCTAGGCACAGCTTCTCTGGTCTTCCAGAGCAAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS TCA 90 bp | GTGTGGAGGAAGAGGTCCTGCGTGGCCGTGAAACCACACTGCCCATaGATGCTTTGGACATATCACTCATTTCTTCCTTCAGCATGTCCC | + |
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Preference number: 5 (lower is better) Translates to: VWRKRSCVAVKPHCP*MLWTYHSFLPSACP Trigger: GGGACATGCTGAAGGAAGAAATGAGTGATATGTCCAAAGCATTCATGGGCAGTGTGGTTTCACGGCCACGCAGGACCTCTTCCTCCACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCCTGCCCATGAATGCTTaGGACATATCACTCATTTCT | + |
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Preference number: 5 (lower is better) Translates to: ACLQREAEAGESVTSRPALPMNA*DISLIS Trigger: AGAAATGAGTGATATGTCCAAAGCATTCATGGGCAG...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | GCATGCCTTCAAAGGGAGGCAGAGGCAGGCGAATCTGTGACTTCAAGGCCAGCCTCTTTCAAAGATTGCTaGTCCACATTTGAAAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: ACLQREAEAGESVTSRPASFKDC*STFESS Trigger: TGAGCTTTCAAATGTGGACAAGCAATCTTTGAAAGA...GGCTGGCCTTGAAGTCACAGATTCGCCTGCCTCTGCCTCCCTTTGAAGGCATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | GTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAAGCCTGGAAGGTGACAGCTCTTATCTGCATTaGATTCTTCCTGTCTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: VEQEAHSLNLANASLEGDSSYLH*ILPVSA Trigger: AGCAGAGACAGGAAGAATCAAATGCAGATAAGAGCT...GTCACCTTCCAGGCTTGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS GCA 90 bp | AGCAAAATCTATTCCAGGCATGTCACCAGCAGGGTGGAGTCCTTCTaGTTCAAACTGTTCTGTCTTGTTCCATCTGAAAGGTGGTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: SKIYSRHVTSRVESF*FKLFCLVPSERWFK Trigger: TTTGAACCACCTTTCAGATGGAACAAGACAGAACAGTTTGAAGCAGAAGGACTCCACCCTGCTGGTGACATGCCTGGAATAGATTTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | CATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGGTCTTGTTCTCCAGTTaGGCTCTGAACAGCACTTGG | + |
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Preference number: 5 (lower is better) Translates to: HYNEKICVHVQGQNCAGRVLFSS*ALNSTW Trigger: CCAAGTGCTGTTCAGAGCCAAACTGGAGAACAAGAC...CCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGACCGTTCATTATGCCTTaGTTCTTCTCTCTGCCTGCG | + |
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Preference number: 5 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGPFIMP*FFSLPA Trigger: CGCAGGCAGAGAGAAGAACAAAGGCATAATGAACGG...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS TCA 90 bp | CAGGGTGGAGTCCTTCTGCTTCAAACTGTTCTGTCTTGTTCCATCTaGAAGGTGGTTCAAATTTCTCATCTTTCAAAGATTGCTTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: QGGVLLLQTVLSCSI*KVVQISHLSKIACP Trigger: TGGACAAGCAATCTTTGAAAGATGAGAAATTTGAACCACCTTTCAGATGGAACAAGACAGAACAGTTTGAAGCAGAAGGACTCCACCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | CATTATAGCCCAAGTGTGGAGCAGGAGGCACACAGCTTAAACTTAGCAAATGCAGAGCATAAATTTCTTTaGATTCCATCTCTCGGTGTT | + |
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Preference number: 5 (lower is better) Translates to: HYSPSVEQEAHSLNLANAEHKFL*IPSLGV Trigger: AACACCGAGAGATGGAATCAAAAGAAATTTATGCTC...TGCATTTGCTAAGTTTAAGCTGTGTGCCTCCTGCTCCACACTTGGGCTATAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS TCA 90 bp | TCCACATTTGAAAGCTCACTTTTATCTTGCGTTTCAGTTTGTCTCTaGTATAAACAGGCATTTTGCTCTGGAAGACCAGAGAAGCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: STFESSLLSCVSVCL*YKQAFCSGRPEKLC Trigger: GCACAGCTTCTCTGGTCTTCCAGAGCAAAATGCCTGTTTATATCAGAGACAAACTGAAACGCAAGATAAAAGTGAGCTTTCAAATGTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGATCAAACTGTTCTGTCTaGTTCCATCTGAAAGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGSNCSV*FHLKGG Trigger: ACCACCTTTCAGATGGAACAAGACAGAACAGTTTGA...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | ATTACAATGAAAAGATTTGTGTTCATGTCCAGGGACAAAACTGTGCTGGGAGGAATTCTGAGTAGCTCTTaGATAGTAAGTTCTGAATGC | + |
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Preference number: 5 (lower is better) Translates to: ITMKRFVFMSRDKTVLGGILSSS*IVSSEC Trigger: GCATTCAGAACTTACTATCAAAGAGCTACTCAGAAT...TCCTCCCAGCACAGTTTTGTCCCTGGACATGAACACAAATCTTTTCATTGTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS-3UTR CAA 90 bp | GGAGTTTTTGTTTCATTTTTACAGTTCTGGAGACTGAGAATCTCAGTAACAAAGAAGCTCACTTTTATCTaGCGTTTCAGTTTGTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GVFVSFLQFWRLRISVTKKLTFI*RFSLSL Trigger: CAGAGACAAACTGAAACGCAAGATAAAAGTGAGCTT...CTTTGTTACTGAGATTCTCAGTCTCCAGAACTGTAAAAATGAAACAAAAACTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS GCA 90 bp | TTGTTCCATCTGAAAGGTGGTTCAAATTTCTCATCTTTCAAAGATTaGTTGTCCACATTTGAAAGCTCACTTTTATCTTGCGTTTCAGTT | + |
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Preference number: 5 (lower is better) Translates to: LFHLKGGSNFSSFKD*LSTFESSLLSCVSV Trigger: AACTGAAACGCAAGATAAAAGTGAGCTTTCAAATGTGGACAAGCAATCTTTGAAAGATGAGAAATTTGAACCACCTTTCAGATGGAACAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CCA 72 bp | CCAGAGAAGCTGTGCCTAGATGGAACAGGTGACGCCTaGGCTGTTCTCTCAGGACAAGGACTAGGGGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: PEKLCLDGTGDA*AVLSGQGLGEA Trigger: TGCTTCCCCTAGTCCTTGTCCTGAGAGAACAGCCCAGGCGTCACCTGTTCCATCTAGGCACAGCTTCTCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS GCA 72 bp | AAACAGGCATTTTGCTCTGGAAGACCAGAGAAGCTGTaGCTAGATGGAACAGGTGACGCCTGGGCTGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: KQAFCSGRPEKL*LDGTGDAWAVL Trigger: GAGAACAGCCCAGGCGTCACCTGTTCCATCTAGGCACAGCTTCTCTGGTCTTCCAGAGCAAAATGCCTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS TCA 72 bp | AAACAGGTCTGTCCATGGAACTGGAAGCTATGCTTCTaGGAGCTGCCACCGAGTTTACAGATGGAGGACTCT | + |
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Preference number: 6 (lower is better) Translates to: KQVCPWNWKLCF*ELPPSLQMEDS Trigger: AGAGTCCTCCATCTGTAAACTCGGTGGCAGCTCTCAGAAGCATAGCTTCCAGTTCCATGGACAGACCTGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CCA 72 bp | GGTACATTCAAGAAATCCCCACTTTTATCTTCACTGTaGGGTGCCATCTTGCCGCTCAATAGGAGGCCACTC | + |
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Preference number: 6 (lower is better) Translates to: GTFKKSPLLSSL*GAILPLNRRPL Trigger: GAGTGGCCTCCTATTGAGCGGCAAGATGGCACCCCACAGTGAAGATAAAAGTGGGGATTTCTTGAATGTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS GCA 72 bp | TATTCCAGGCATGTCACCAGCAGGGTGGAGTCCTTCTaGTTCAAACTGTTCTGTCTTGTTCCATCTGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: YSRHVTSRVESF*FKLFCLVPSER Trigger: CCTTTCAGATGGAACAAGACAGAACAGTTTGAAGCAGAAGGACTCCACCCTGCTGGTGACATGCCTGGAATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS TCA 72 bp | ATTTCACTCTGCAGCTGTTTCTCAAGAGCCTGCCTATaGGTTTCAAAGTCCTTGTGCTCCAGTTCCATAGCC | + |
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Preference number: 6 (lower is better) Translates to: ISLCSCFSRACL*VSKSLCSSSIA Trigger: GGCTATGGAACTGGAGCACAAGGACTTTGAAACTCATAGGCAGGCTCTTGAGAAACAGCTGCAGAGTGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CCA 72 bp | ACAGCAAAATCTATTCCAGGCATGTCACCAGCAGGGTaGAGTCCTTCTGCTTCAAACTGTTCTGTCTTGTTC | + |
|
Preference number: 6 (lower is better) Translates to: TAKSIPGMSPAG*SPSASNCSVLF Trigger: GAACAAGACAGAACAGTTTGAAGCAGAAGGACTCCACCCTGCTGGTGACATGCCTGGAATAGATTTTGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CAA 72 bp | GGTGGGACCCTTGACATAACTGCACCTGCTATAACCTaGTTCTGTTCAAGGGGTACATTCAAGAAATCCCCA | + |
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Preference number: 6 (lower is better) Translates to: GGTLDITAPAIT*FCSRGTFKKSP Trigger: TGGGGATTTCTTGAATGTACCCCTTGAACAGAACAAGGTTATAGCAGGTGCAGTTATGTCAAGGGTCCCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CCA 72 bp | TACATTTCATTATCAAGACTTCTTCTCGATTTTGGATaGGGTGTAGAGGAGAGGCGTGTGGAGGAAGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: YISLSRLLLDFG*GVEERRVEEEV Trigger: GACCTCTTCCTCCACACGCCTCTCCTCTACACCCCATCCAAAATCGAGAAGAAGTCTTGATAATGAAATGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CAA 90 bp | CTACCTGAAGCTGGTGTTGTACTTCTTTCTTATACTCGTTTAACTTaGTCTCTAAAGATTCTAGCTTGGAACGGTGAGGAAAACCATCTG | + |
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Preference number: 6 (lower is better) Translates to: LPEAGVVLLSYTRLT*SLKILAWNGEENHL Trigger: CAGATGGTTTTCCTCACCGTTCCAAGCTAGAATCTTTAGAGACAAAGTTAAACGAGTATAAGAAAGAAGTACAACACCAGCTTCAGGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS TCA 72 bp | GAAAGCTCACTTTTATCTTGCGTTTCAGTTTGTCTCTaGTATAAACAGGCATTTTGCTCTGGAAGACCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: ESSLLSCVSVCL*YKQAFCSGRPE Trigger: CTCTGGTCTTCCAGAGCAAAATGCCTGTTTATATCAGAGACAAACTGAAACGCAAGATAAAAGTGAGCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CCA 72 bp | GTTAACCTTTTGACAGAAGCATCATATTCTGCTATCTaGGTCCTTAGCTGTGCAGAATTTTCAATTTCACTC | + |
|
Preference number: 6 (lower is better) Translates to: VNLLTEASYSAI*VLSCAEFSISL Trigger: GAGTGAAATTGAAAATTCTGCACAGCTAAGGACCCAGATAGCAGAATATGATGCTTCTGTCAAAAGGTTAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CAA 72 bp | GCTGGTGTTGTACTTCTTTCTTATACTCGTTTAACTTaGTCTCTAAAGATTCTAGCTTGGAACGGTGAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: AGVVLLSYTRLT*SLKILAWNGEE Trigger: TTCCTCACCGTTCCAAGCTAGAATCTTTAGAGACAAAGTTAAACGAGTATAAGAAAGAAGTACAACACCAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CAA 90 bp | TTCCATCTGAAAGGTGGTTCAAATTTCTCATCTTTCAAAGATTGCTaGTCCACATTTGAAAGCTCACTTTTATCTTGCGTTTCAGTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: FHLKGGSNFSSFKDC*STFESSLLSCVSVC Trigger: ACAAACTGAAACGCAAGATAAAAGTGAGCTTTCAAATGTGGACAAGCAATCTTTGAAAGATGAGAAATTTGAACCACCTTTCAGATGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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| CDS CAA 72 bp | AAAGGTGGTTCAAATTTCTCATCTTTCAAAGATTGCTaGTCCACATTTGAAAGCTCACTTTTATCTTGCGTT | + |
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Preference number: 6 (lower is better) Translates to: KGGSNFSSFKDC*STFESSLLSCV Trigger: AACGCAAGATAAAAGTGAGCTTTCAAATGTGGACAAGCAATCTTTGAAAGATGAGAAATTTGAACCACCTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049501.9 |
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