Pregenerated sensors for ODF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032921Ensembl transcript IDs: ENSMUST00000038932.14, ENSMUST00000125134.2, ENSMUST00000130271.8, ENSMUST00000156828.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTTTATCTGGACTTGATGGCTTTTGGTCATCCTTAGGAGACTCCTaGCTGTTCTCCTGGCTGCTGGGGGTCTGGGAGGGACTCACCAGA | + |
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Preference number: 1 (lower is better) Translates to: TLSGLDGFWSSLGDS*LFSWLLGVWEGLTR Trigger: TCTGGTGAGTCCCTCCCAGACCCCCAGCAGCCAGGAGAACAGCCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCCAGATAAAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| 3UTR CCA 90 bp | CCTCCTTTGCTCCTCCTTGGTCACGATGAGGACAGTCCTAGCCAGTaGTGTCTGGCTGGGGTGGTGAGACTACTTTATCTGGACTTGATG | + |
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Preference number: 1 (lower is better) Translates to: PPLLLLGHDEDSPSQ*CLAGVVRLLYLDLM Trigger: CATCAAGTCCAGATAAAGTAGTCTCACCACCCCAGCCAGACACCACTGGCTAGGACTGTCCTCATCGTGACCAAGGAGGAGCAAAGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| 3UTR GCA 90 bp | CCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGGAATaGAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCTTGGTCACG | + |
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Preference number: 1 (lower is better) Translates to: PHHLSHRQSQVEEEE*KAGPQILLCSSLVT Trigger: CGTGACCAAGGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| 3UTR CAA 90 bp | GAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCTaGGTCACGATGAGGACAGTCCTAGCCAGTGGTGTCTGGCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: EEECKAGPQILLCSS*VTMRTVLASGVWLG Trigger: CCCCAGCCAGACACCACTGGCTAGGACTGTCCTCATCGTGACCAAGGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTGGGGGTCTGGGAGGGACTCACCAGAGACTCTGGCCCTAAGCTGCTGCAAGAGAGGAATGCAAAGCTaGTCCCCAAATCCTCCTTTG | + |
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Preference number: 2 (lower is better) Translates to: CWGSGRDSPETLALSCCKRGMQS*SPNPPL Trigger: CAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCT...CTTGCAGCAGCTTAGGGCCAGAGTCTCTGGTGAGTCCCTCCCAGACCCCCAGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| 3UTR-3UTR TCA 90 bp | GAGACTACTTTATCTGGACTTGATGGCTTTTGGTCATCCTTAGGAGACTCCTGGCAGACAAAGCCAAGTTaGGGAAGAGGAATGCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: ETTLSGLDGFWSSLGDSWQTKPS*GRGMQS Trigger: GCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTG...CCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCCAGATAAAGTAGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| 3UTR-3UTR TCA 90 bp | TCTGGACTTGATGGCTTTTGGTCATCCTTAGGAGACTCCTGGCTGTTCTCCTGGAGTAGTTTTTATGGTTaGGGTAGCAAAGAATCCCAC | + |
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Preference number: 2 (lower is better) Translates to: SGLDGFWSSLGDSWLFSWSSFYG*GSKESH Trigger: GTGGGATTCTTTGCTACCTCAACCATAAAAACTACT...CCAGGAGAACAGCCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| 3UTR-3UTR TCA 90 bp | CAGACTCCAGTAGTTTTTATGGTTGAGGTAGCAAAGAATCCCACAAGTGAAATAGCACCAGCCAACCAATaGAATAGCTCCAGCCGATGG | + |
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Preference number: 2 (lower is better) Translates to: QTPVVFMVEVAKNPTSEIAPANQ*NSSSRW Trigger: CCATCGGCTGGAGCTATTTCATTGGTTGGCTGGTGC...TATTTCACTTGTGGGATTCTTTGCTACCTCAACCATAAAAACTACTGGAGTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| 3UTR CCA 72 bp | TTTTGGTCATCCTTAGGAGACTCCTGGCTGTTCTCCTaGCTGCTGGGGGTCTGGGAGGGACTCACCAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: FWSSLGDSWLFS*LLGVWEGLTRD Trigger: GTCTCTGGTGAGTCCCTCCCAGACCCCCAGCAGCCAGGAGAACAGCCAGGAGTCTCCTAAGGATGACCAAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| 3UTR CCA 72 bp | GGACTTGATGGCTTTTGGTCATCCTTAGGAGACTCCTaGCTGTTCTCCTGGCTGCTGGGGGTCTGGGAGGGA | + |
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Preference number: 3 (lower is better) Translates to: GLDGFWSSLGDS*LFSWLLGVWEG Trigger: TCCCTCCCAGACCCCCAGCAGCCAGGAGAACAGCCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| 3UTR TCA 72 bp | CCAGAGACTCTGGCCCTAAGCTGCTGCAAGCAGTGTTaGTGGTGGTGCTGCTCATTATCAGACTCCAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: PETLALSCCKQC*WWCCSLSDSSS Trigger: ACTACTGGAGTCTGATAATGAGCAGCACCACCATCAACACTGCTTGCAGCAGCTTAGGGCCAGAGTCTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGCTCCAGCCGATGGGAACCGATATATTCTTCCTCAGCTCGTAGATCCAGAGTCCCCAAATCCTCCTTaGCTCCTCCTTGGTCACGAT | + |
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Preference number: 3 (lower is better) Translates to: IAPADGNRYILPQLVDPESPNPP*LLLGHD Trigger: ATCGTGACCAAGGAGGAGCAAAGGAGGATTTGGGGA...CTCTGGATCTACGAGCTGAGGAAGAATATATCGGTTCCCATCGGCTGGAGCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| 3UTR-3UTR CAA 90 bp | ACTTTATCTGGACTTGATGGCTTTTGGTCATCCTTAGGAGACTCCTGGCTGTTCCTGCTGCAAGCAGTGTaGATGGTGGTGCTGCTCATT | + |
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Preference number: 3 (lower is better) Translates to: TLSGLDGFWSSLGDSWLFLLQAV*MVVLLI Trigger: AATGAGCAGCACCACCATCAACACTGCTTGCAGCAG...GAACAGCCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCCAGATAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| 3UTR TCA 72 bp | TATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTaGGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCT | + |
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Preference number: 3 (lower is better) Translates to: YSTSPEPQTKPS*GRGMQSWSPNP Trigger: AGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | CTGGGGGTCTGGGAGGGACTCACCAGAGACTCTGGCCCTAAGCTGCTGCAAGCACACCAGGCTGAACTCTaGGGCCACCACCTGGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LGVWEGLTRDSGPKLLQAHQAEL*GHHLGH Trigger: ATGGCCCAGGTGGTGGCCTCAGAGTTCAGCCTGGTG...TGCTTGCAGCAGCTTAGGGCCAGAGTCTCTGGTGAGTCCCTCCCAGACCCCCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR CCA 90 bp | GCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTTCCTGGCTGTTCTCCTaGCTGCTGGGGGTCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: AKLRKRNAKLVPKSSFAPSWLFS*LLGVWE Trigger: CTCCCAGACCCCCAGCAGCCAGGAGAACAGCCAGGA...AGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR CCA 90 bp | GCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTTGTTCTCCTGGCTGCTaGGGGTCTGGGAGGGACTCA | + |
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Preference number: 4 (lower is better) Translates to: AKLRKRNAKLVPKSSFAPCSPGC*GSGRDS Trigger: TGAGTCCCTCCCAGACCCCCAGCAGCCAGGAGAACA...AGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| 3UTR CAA 72 bp | TGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCTaGGTCACGATGAGGACAGTCCTAGCCAGTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: CKAGPQILLCSS*VTMRTVLASGV Trigger: GACACCACTGGCTAGGACTGTCCTCATCGTGACCAAGGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | ATCCTCCTTTGCTCCTCCTTGGTCACGATGAGGACAGTCCTAGCCAGTGGTGTCTCTTGGAGAAGACCATaGCTAGGAGCAGGAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: ILLCSSLVTMRTVLASGVSWRRP*LGAGGR Trigger: CCTTCCTCCTGCTCCTAGTCATGGTCTTCTCCAAGA...GACACCACTGGCTAGGACTGTCCTCATCGTGACCAAGGAGGAGCAAAGGAGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| CDS-3UTR GCA 90 bp | TTTATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGGAATGCGGCTGTTCTCCTGGCTaGTGGGGGTCTGGGAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: FIPHHLSHRQSQVEEEECGCSPG*WGSGRD Trigger: GTCCCTCCCAGACCCCCAGCAGCCAGGAGAACAGCC...GCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAATAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| 3UTR CAA 72 bp | GGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTaGCTCCTCCTTGGTCACGATGAGGACAGTCCTAGC | + |
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Preference number: 4 (lower is better) Translates to: GRGMQSWSPNPP*LLLGHDEDSPS Trigger: GCTAGGACTGTCCTCATCGTGACCAAGGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | ATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAACACCAGGCTGAACTCTaGGGCCACCACCTGGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: IPHHLSHRQSQVEEEECKHQAEL*GHHLGH Trigger: ATGGCCCAGGTGGTGGCCTCAGAGTTCAGCCTGGTG...TTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | GGACTTGATGGCTTTTGGTCATCCTTAGGAGACTCCTGGCTGTTCTCCTGGCTGGTCTTCTCCGTTGTCTaGGCTGGGGCAGCTTTTAGA | + |
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Preference number: 4 (lower is better) Translates to: GLDGFWSSLGDSWLFSWLVFSVV*AGAAFR Trigger: TCTAAAAGCTGCCCCAGCTCAGACAACGGAGAAGAC...CAGCCAGGAGAACAGCCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | TTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCTTGGGCACCAGCCAACCAATaGAATAGCTCCAGCCGATGG | + |
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Preference number: 4 (lower is better) Translates to: LRKRNAKLVPKSSFAPPWAPANQ*NSSSRW Trigger: CCATCGGCTGGAGCTATTTCATTGGTTGGCTGGTGC...CCAAGGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR CCA 90 bp | GGGCAATTTATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGTCTGAGGCCACCACCTaGGCCATCCAGCGAGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: GQFIPHHLSHRQSQVEEESEATT*AIQREL Trigger: CAACTCTCGCTGGATGGCCCAGGTGGTGGCCTCAGA...CTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAATAAATTGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR CCA 90 bp | CCAACCAATGAAATAGCTCCAGCCGATGGGAACCGATATATTCTTCCTCAGCTCTCTGAGGCCACCACCTaGGCCATCCAGCGAGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: PTNEIAPADGNRYILPQLSEATT*AIQREL Trigger: CAACTCTCGCTGGATGGCCCAGGTGGTGGCCTCAGA...GAGCTGAGGAAGAATATATCGGTTCCCATCGGCTGGAGCTATTTCATTGGTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR CCA 90 bp | CATGGGCAATTTATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAATGGCTGCTGGGGGTCTaGGAGGGACTCACCAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: HGQFIPHHLSHRQSQVEEWLLGV*EGLTRD Trigger: GTCTCTGGTGAGTCCCTCCCAGACCCCCAGCAGCCA...TTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAATAAATTGCCCATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR CCA 90 bp | GCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTTCCTTAGGAGACTCCTaGCTGTTCTCCTGGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: AKLRKRNAKLVPKSSFAPSLGDS*LFSWLL Trigger: CAGCAGCCAGGAGAACAGCCAGGAGTCTCCTAAGGA...AGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR TCA 90 bp | CAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCTCTTGGAGAAGACCATaGCTAGGAGCAGGAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: QVEEEECKAGPQILLCSSSWRRP*LGAGGR Trigger: CCTTCCTCCTGCTCCTAGTCATGGTCTTCTCCAAGA...GGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | TCTGGACTTGATGGCTTTTGGTCATCCTTAGGAGACTCCTGGCTGTTCTCCTGGTCTTGGAGAAGACCATaGCTAGGAGCAGGAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SGLDGFWSSLGDSWLFSWSWRRP*LGAGGR Trigger: CCTTCCTCCTGCTCCTAGTCATGGTCTTCTCCAAGA...CCAGGAGAACAGCCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR TCA 90 bp | TTTATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGGAATGCGGTGCAGCCAGGTGGTaGGGACAAAACCCAGCCCTA | + |
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Preference number: 4 (lower is better) Translates to: FIPHHLSHRQSQVEEEECGAARW*GQNPAL Trigger: TAGGGCTGGGTTTTGTCCTCACCACCTGGCTGCACC...GCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | ACTTTATCTGGACTTGATGGCTTTTGGTCATCCTTAGGAGACTCCTGGCTGTTCGGTGCAGCCAGGTGGTaGGGACAAAACCCAGCCCTA | + |
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Preference number: 4 (lower is better) Translates to: TLSGLDGFWSSLGDSWLFGAARW*GQNPAL Trigger: TAGGGCTGGGTTTTGTCCTCACCACCTGGCTGCACC...GAACAGCCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCCAGATAAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | GCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTGTCTGGCTGGGGTGGTaGGACTACTTTATCTGGACT | + |
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Preference number: 4 (lower is better) Translates to: AKLRKRNAKLVPKSSFAPVWLGW*DYFIWT Trigger: AGTCCAGATAAAGTAGTCTCACCACCCCAGCCAGAC...AGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR TCA 90 bp | GCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTTGCTGCAAGCAGTGTTaGTGGTGGTGCTGCTCATTA | + |
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Preference number: 4 (lower is better) Translates to: AKLRKRNAKLVPKSSFAPCCKQC*WWCCSL Trigger: TAATGAGCAGCACCACCATCAACACTGCTTGCAGCA...AGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR TCA 90 bp | GTTGAGGTAGCAAAGAATCCCACAAGTGAAATACAGGATGAGCACCAGCCAACCCCCTTCTCCGTTGTCTaGGCTGGGGCAGCTTTTAGA | + |
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Preference number: 4 (lower is better) Translates to: VEVAKNPTSEIQDEHQPTPFSVV*AGAAFR Trigger: TCTAAAAGCTGCCCCAGCTCAGACAACGGAGAAGGG...GGTTGGCTGGTGCTCATCCTGTATTTCACTTGTGGGATTCTTTGCTACCTCAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000156828.2 |
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| CDS-3UTR CCA 90 bp | AATGAAATAGCTCCAGCCGATGGGAACCGATATATTCTTCCTCAGCTCGTAGATTCTGAGGCCACCACCTaGGCCATCCAGCGAGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: NEIAPADGNRYILPQLVDSEATT*AIQREL Trigger: CAACTCTCGCTGGATGGCCCAGGTGGTGGCCTCAGA...ATCTACGAGCTGAGGAAGAATATATCGGTTCCCATCGGCTGGAGCTATTTCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR TCA 90 bp | GCCACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCCACAGAAGCTCAGGATaGTTCCAATCAGGCCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: ATDKAKLRKRNAKLVPKSHRSSG*FQSGQR Trigger: TCTTTGGCCTGATTGGAATCATCCTGAGCTTCTGTG...GGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | TTTATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGGAATGCGTCTTCTCCGTTGTCTaGGCTGGGGCAGCTTTTAGA | + |
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Preference number: 4 (lower is better) Translates to: FIPHHLSHRQSQVEEEECVFSVV*AGAAFR Trigger: TCTAAAAGCTGCCCCAGCTCAGACAACGGAGAAGAC...GCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | ACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCCACAGAAGCTCAGGATaGTTCCAATCAGGCCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: TDKAKLRKRNAKLVPKSSHRSSG*FQSGQR Trigger: TCTTTGGCCTGATTGGAATCATCCTGAGCTTCTGTG...GGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | GTTTTTATGGTTGAGGTAGCAAAGAATCCCACAAGTGAAATACAGGATGAGCACGGTGCAGCCAGGTGGTaGGGACAAAACCCAGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: VFMVEVAKNPTSEIQDEHGAARW*GQNPAL Trigger: AAGGGCTGGGTTTTGTCCTCACCACCTGGCTGCACC...GTGCTCATCCTGTATTTCACTTGTGGGATTCTTTGCTACCTCAACCATAAAAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156828.2 |
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| CDS-3UTR CCA 90 bp | CCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTTGGACATACTGTGGATaGAGGTGTAGACTCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PHHLSHRQSQVEEEECKAWTYCG*RCRLSW Trigger: CCAAGAGAGTCTACACCTCCATCCACAGTATGTCCA...AGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | CAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCTACTTTATCTGGACTTaGTGGCTTTTGGTCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: QVEEEECKAGPQILLCSSYFIWT*WLLVIL Trigger: AAGGATGACCAAAAGCCATCAAGTCCAGATAAAGTA...GGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR GCA 90 bp | ACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCGCGAGAGTTGTTTGTTaGTTTCCATTGAAAGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: TDKAKLRKRNAKLVPKSSARVVC*FPLKGQ Trigger: TTGCCCTTTCAATGGAAAGCAACAAACAACTCTCGC...GGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR CCA 90 bp | ATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAATGGACATACTGTGGATaGAGGTGTAGACTCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: IPHHLSHRQSQVEEEECKWTYCG*RCRLSW Trigger: CCAAGAGAGTCTACACCTCCATCCACAGTATGTCCA...TTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR CCA 90 bp | GACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTAGCCACCCCAAAAACTaGATGGATTGTCCACATCTT | + |
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Preference number: 4 (lower is better) Translates to: DKAKLRKRNAKLVPKSSFSHPKN*MDCPHL Trigger: AAGATGTGGACAATCCATCCAGTTTTTGGGGTGGCT...AAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | AAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCTAGTAGTTTTTATGGTTaGGGTAGCAAAGAATCCCAC | + |
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Preference number: 4 (lower is better) Translates to: KLRKRNAKLVPKSSFAPPSSFYG*GSKESH Trigger: GTGGGATTCTTTGCTACCTCAACCATAAAAACTACT...AGGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR GCA 90 bp | ATCCAGAGGTTAACAGGGAACAACAGGAGGGTGAGGAAAATTAAGGTGACTGGGGCGAGAGTTGTTTGTTaGTTTCCATTGAAAGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: IQRLTGNNRRVRKIKVTGARVVC*FPLKGQ Trigger: TTGCCCTTTCAATGGAAAGCAACAAACAACTCTCGC...CCCAGTCACCTTAATTTTCCTCACCCTCCTGTTGTTCCCTGTTAACCTCTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156828.2 |
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| CDS-3UTR TCA 90 bp | CATGGGCAATTTATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAATTTGTTGCTTTCCATTaGAAGGGCAATAGGGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: HGQFIPHHLSHRQSQVEEFVAFH*KGNREL Trigger: CAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAA...TTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAATAAATTGCCCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR CCA 90 bp | GTAGCAAAGAATCCCACAAGTGAAATACAGGATGAGCACCAGCCAACCAATGAAAGCCACCCCAAAAACTaGATGGATTGTCCACATCTT | + |
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Preference number: 4 (lower is better) Translates to: VAKNPTSEIQDEHQPTNESHPKN*MDCPHL Trigger: AAGATGTGGACAATCCATCCAGTTTTTGGGGTGGCT...TTCATTGGTTGGCTGGTGCTCATCCTGTATTTCACTTGTGGGATTCTTTGCTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | CAATTTATTCCACATCACCTGAGCCACAGACAAAGCCAAGTTGAGGAAGAGGAATTTGTTGCTTTCCATTaGAAGGGCAATAGGGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: QFIPHHLSHRQSQVEEEEFVAFH*KGNREL Trigger: CAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAA...TTCCTCTTCCTCAACTTGGCTTTGTCTGTGGCTCAGGTGATGTGGAATAAATTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR TCA 90 bp | GTTTTTATGGTTGAGGTAGCAAAGAATCCCACAAGTGAAATACAGGATGAGCACCACAGAAGCTCAGGATaGTTCCAATCAGGCCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: VFMVEVAKNPTSEIQDEHHRSSG*FQSGQR Trigger: TCTTTGGCCTGATTGGAATCATCCTGAGCTTCTGTG...GTGCTCATCCTGTATTTCACTTGTGGGATTCTTTGCTACCTCAACCATAAAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR GCA 90 bp | GCAAGCAGTGTTGATGGTGGTGCTGCTCATTATCAGACTCCAGTAGTTTTTATGGCGAGAGTTGTTTGTTaGTTTCCATTGAAAGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: ASSVDGGAAHYQTPVVFMARVVC*FPLKGQ Trigger: TTGCCCTTTCAATGGAAAGCAACAAACAACTCTCGC...CATAAAAACTACTGGAGTCTGATAATGAGCAGCACCACCATCAACACTGCTTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR TCA 90 bp | GTTGATGGTGGTGCTGCTCATTATCAGACTCCAGTAGTTTTTATGGTTGAGGTATTTGTTGCTTTCCATTaGAAGGGCAATAGGGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: VDGGAAHYQTPVVFMVEVFVAFH*KGNREL Trigger: CAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAA...TACCTCAACCATAAAAACTACTGGAGTCTGATAATGAGCAGCACCACCATCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS TCA 90 bp | GCATTCTCTGCAAGCAGGGCAGGTAGGGCAGGTGCAGCCAGGTGGTaGGGACAAAACCCAGCCCTTCTCCGTTGTCTGAGCTGGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: AFSASRAGRAGAARW*GQNPALLRCLSWGS Trigger: GCTGCCCCAGCTCAGACAACGGAGAAGGGCTGGGTTTTGTCCTCACCACCTGGCTGCACCTGCCCTACCTGCCCTGCTTGCAGAGAATGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156828.2 |
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| CDS TCA 90 bp | GCCACCACCTGGGCCATCCAGCGAGAGTTGTTTGTTGCTTTCCATTaGAAGGGCAATAGGGAGTTGCGACGATGCTCCAGTGACCGCCTG | + |
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Preference number: 5 (lower is better) Translates to: ATTWAIQRELFVAFH*KGNRELRRCSSDRL Trigger: CAGGCGGTCACTGGAGCATCGTCGCAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAACAACTCTCGCTGGATGGCCCAGGTGGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000038932.14 ENSMUST00000125134.2 ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR CAA 90 bp | CCCACAAGTGAAATACAGGATGAGCACCAGCCAACCAATGAAATAGCTCCAGCCCCCAGCCCTTCTCCGTaGTCTGAGCTGGGGCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: PTSEIQDEHQPTNEIAPAPSPSP*SELGQL Trigger: AAGCTGCCCCAGCTCAGACAACGGAGAAGGGCTGGG...GGCTGGAGCTATTTCATTGGTTGGCTGGTGCTCATCCTGTATTTCACTTGTGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000156828.2 |
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| CDS-3UTR CAA 90 bp | GTCTGGGAGGGACTCACCAGAGACTCTGGCCCTAAGCTGCTGCAAGCAGTGTTGTCCAGCGAGAGTTGTTaGTTGCTTTCCATTGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: VWEGLTRDSGPKLLQAVLSSESC*LLSIER Trigger: CCTTTCAATGGAAAGCAACAAACAACTCTCGCTGGA...CAACACTGCTTGCAGCAGCTTAGGGCCAGAGTCTCTGGTGAGTCCCTCCCAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS GCA 90 bp | AGCGAGAGTTGTTTGTTGCTTTCCATTGAAAGGGCAATAGGGAGTTaGGACGATGCTCCAGTGACCGCCTGTTCCTGCTGGTCCTTATCC | + |
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Preference number: 5 (lower is better) Translates to: SESCLLLSIERAIGS*DDAPVTACSCWSLS Trigger: GGATAAGGACCAGCAGGAACAGGCGGTCACTGGAGCATCGTCGCAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAACAACTCTCGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS GCA 90 bp | AGCGAGAGTTGTTTGTTGCTTTCCATTGAAAGGGCAATAGGGAGTTaGGACGATGCTCCAGTGACCGCCTGTTCCTGGTCCTTATCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SESCLLLSIERAIGS*DDAPVTACSWSLSS Trigger: AGAGGATAAGGACCAGGAACAGGCGGTCACTGGAGCATCGTCGCAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAACAACTCTCGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125134.2 |
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| CDS-3UTR CAA 90 bp | ATCCTCCTTTGCTCCTCCTTGGTCACGATGAGGACAGTCCTAGCCAGTGGTGTCGGATACAACCATTTCTaGGAGAAGACCATGACTAGG | + |
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Preference number: 5 (lower is better) Translates to: ILLCSSLVTMRTVLASGVGYNHF*EKTMTR Trigger: CCTAGTCATGGTCTTCTCCAAGAAATGGTTGTATCC...GACACCACTGGCTAGGACTGTCCTCATCGTGACCAAGGAGGAGCAAAGGAGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| CDS-3UTR CAA 90 bp | CACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTGCTGCAAGCAGTGTaGATGGTGGTGCTGCTCATT | + |
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Preference number: 5 (lower is better) Translates to: HRQSQVEEEECKAGPQILLLQAV*MVVLLI Trigger: AATGAGCAGCACCACCATCAACACTGCTTGCAGCAG...GAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR CAA 90 bp | ATCCTCCTTTGCTCCTCCTTGGTCACGATGAGGACAGTCCTAGCCAGTGGTGTCGTCCACATCTTAAAATaGTCTTCTCCGTTGTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: ILLCSSLVTMRTVLASGVVHILK*SSPLSE Trigger: CTCAGACAACGGAGAAGACAATTTTAAGATGTGGAC...GACACCACTGGCTAGGACTGTCCTCATCGTGACCAAGGAGGAGCAAAGGAGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130271.8 |
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| CDS-3UTR CAA 90 bp | CACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCTCCAGCGAGAGTTGTTaGTTGCTTTCCATTGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: HRQSQVEEEECKAGPQILSSESC*LLSIER Trigger: CCTTTCAATGGAAAGCAACAAACAACTCTCGCTGGA...GAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR CAA 90 bp | CACAGACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCGGATACAACCATTTCTaGGAGAAGACCATGACTAGG | + |
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Preference number: 5 (lower is better) Translates to: HRQSQVEEEECKAGPQILGYNHF*EKTMTR Trigger: CCTAGTCATGGTCTTCTCCAAGAAATGGTTGTATCC...GAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTCTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR CAA 90 bp | CAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCGTCCACATCTTAAAATaGTCTTCTCCGTTGTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: QVEEEECKAGPQILLCSSVHILK*SSPLSE Trigger: CTCAGACAACGGAGAAGACAATTTTAAGATGTGGAC...GGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR CAA 90 bp | GACAAAGCCAAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTAGCGAGAGTTGTTTGTaGCTTTCCATTGAAAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: DKAKLRKRNAKLVPKSSFSESCL*LSIERA Trigger: TGCCCTTTCAATGGAAAGCAACAAACAACTCTCGCT...AAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTTGGCTTTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS-3UTR CAA 90 bp | AAGTTGAGGAAGAGGAATGCAAAGCTGGTCCCCAAATCCTCCTTTGCTCCTCCTCTACTTTATCTGGACTaGATGGCTTTTGGTCATCCT | + |
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Preference number: 5 (lower is better) Translates to: KLRKRNAKLVPKSSFAPPLLYLD*MAFGHP Trigger: AGGATGACCAAAAGCCATCAAGTCCAGATAAAGTAG...AGGAGGAGCAAAGGAGGATTTGGGGACCAGCTTTGCATTCCTCTTCCTCAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038932.14 |
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| CDS-3UTR CAA 90 bp | GCAAGCAGTGTTGATGGTGGTGCTGCTCATTATCAGACTCCAGTAGTTTTTATGAGCGAGAGTTGTTTGTaGCTTTCCATTGAAAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: ASSVDGGAAHYQTPVVFMSESCL*LSIERA Trigger: TGCCCTTTCAATGGAAAGCAACAAACAACTCTCGCT...CATAAAAACTACTGGAGTCTGATAATGAGCAGCACCACCATCAACACTGCTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR CAA 90 bp | GTTGATGGTGGTGCTGCTCATTATCAGACTCCAGTAGTTTTTATGGTTGAGGTAAGCGAGAGTTGTTTGTaGCTTTCCATTGAAAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: VDGGAAHYQTPVVFMVEVSESCL*LSIERA Trigger: TGCCCTTTCAATGGAAAGCAACAAACAACTCTCGCT...TACCTCAACCATAAAAACTACTGGAGTCTGATAATGAGCAGCACCACCATCAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS-3UTR CAA 90 bp | AGTGTTGATGGTGGTGCTGCTCATTATCAGACTCCAGTAGTTTTTATGGTTGAGGGATACAACCATTTCTaGGAGAAGACCATGACTAGG | + |
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Preference number: 5 (lower is better) Translates to: SVDGGAAHYQTPVVFMVEGYNHF*EKTMTR Trigger: CCTAGTCATGGTCTTCTCCAAGAAATGGTTGTATCC...CTCAACCATAAAAACTACTGGAGTCTGATAATGAGCAGCACCACCATCAACACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130271.8 ENSMUST00000156828.2 |
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| CDS GCA 72 bp | TGTTTGTTGCTTTCCATTGAAAGGGCAATAGGGAGTTaGGACGATGCTCCAGTGACCGCCTGTTCCTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: CLLLSIERAIGS*DDAPVTACSCW Trigger: CCAGCAGGAACAGGCGGTCACTGGAGCATCGTCGCAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038932.14 ENSMUST00000130271.8 |
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| CDS GCA 72 bp | TGTTTGTTGCTTTCCATTGAAAGGGCAATAGGGAGTTaGGACGATGCTCCAGTGACCGCCTGTTCCTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: CLLLSIERAIGS*DDAPVTACSWS Trigger: GGACCAGGAACAGGCGGTCACTGGAGCATCGTCGCAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125134.2 |
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| CDS TCA 72 bp | TGGACATACTGTGGATGGAGGTGTAGACTCTCTTGGTaGCATTTTGGGGGTAGCGCTGATGGAAACGACTCT | + |
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Preference number: 6 (lower is better) Translates to: WTYCGWRCRLSW*HFGGSADGNDS Trigger: AGAGTCGTTTCCATCAGCGCTACCCCCAAAATGTCACCAAGAGAGTCTACACCTCCATCCACAGTATGTCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000038932.14 ENSMUST00000125134.2 ENSMUST00000130271.8 ENSMUST00000156828.2 |
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