Pregenerated sensors for ODF3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047394Ensembl transcript IDs: ENSMUST00000049968.9, ENSMUST00000227834.2, ENSMUST00000238996.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGTCCACGTGGTACTGTATCATGGGGGCTAGGTAGTCTGAGTGTCTaGTCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGG | + |
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Preference number: 1 (lower is better) Translates to: RPRGTVSWGLGSLSV*SRSSSHKASGAAGR Trigger: CCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAGACACTCAGACTACCTAGCCCCCATGATACAGTACCACGTGGACG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| 3UTR GCA 90 bp | ACGAGGCTGACCTTACCGAGCCAGCTGTTCGGCTTCATACAGGGATaGCATTTCCCTGGGGACTTTGACCCATGCCTTAGACCTCAGTCC | + |
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Preference number: 1 (lower is better) Translates to: TRLTLPSQLFGFIQG*HFPGDFDPCLRPQS Trigger: GGACTGAGGTCTAAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTATGAAGCCGAACAGCTGGCTCGGTAAGGTCAGCCTCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| 3UTR TCA 72 bp | CAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAGGCTaGCCTTACCGAGCCAGCTGTTCGGCTTCATACAGG | + |
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Preference number: 3 (lower is better) Translates to: QGFRCCGSGRRG*PYRASCSASYR Trigger: CCTGTATGAAGCCGAACAGCTGGCTCGGTAAGGTCAGCCTCGTCTCCCCGACCCGCAGCACCGGAAGCCTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| 3UTR-3UTR CAA 90 bp | CTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAATTTCCCTGGGGACTTaGACCCATGCCTTAGACCTC | + |
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Preference number: 3 (lower is better) Translates to: LIPKLQPQGFRCCGSGRRISLGT*THALDL Trigger: GAGGTCTAAGGCATGGGTCAAAGTCCCCAGGGAAAT...TCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| 3UTR TCA 72 bp | GGTACTGTATCATGGGGGCTAGGTAGTCTGAGTGTCTaGTCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: GTVSWGLGSLSV*SRSSSHKASGA Trigger: AGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAGACACTCAGACTACCTAGCCCCCATGATACAGTACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| 3UTR GCA 72 bp | ACCTTACCGAGCCAGCTGTTCGGCTTCATACAGGGATaGCATTTCCCTGGGGACTTTGACCCATGCCTTAGA | + |
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Preference number: 3 (lower is better) Translates to: TLPSQLFGFIQG*HFPGDFDPCLR Trigger: TCTAAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTATGAAGCCGAACAGCTGGCTCGGTAAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | CGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAGGCTGACAGTTTCGGGGAGCGATaGTATGCCGAGGAGCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RSSSHKASGAAGRGDEADSFGER*YAEERW Trigger: CCAGCGCTCCTCGGCATACCATCGCTCCCCGAAACT...GTCAGCCTCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | CGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAGGCTGACGTAGGCACAAGGGCCTaGGGTCTTGCTGAGGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RSSSHKASGAAGRGDEADVGTRA*GLAEVL Trigger: GAGGACCTCAGCAAGACCCCAGGCCCTTGTGCCTAC...GTCAGCCTCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR GCA 90 bp | CTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGATGCCGCGCACAGTCATaGGAGCAGGCACCAGGTAAC | + |
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Preference number: 4 (lower is better) Translates to: LIPKLQPQGFRCCGSGRRCRAQS*EQAPGN Trigger: GTTACCTGGTGCCTGCTCGCATGACTGTGCGCGGCA...TCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS-3UTR CCA 90 bp | GTGTCTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGTGCATGCCGCAAGGGTaGACGCGAGCCGAAGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: VSDPEAPATRLPVLRVGECMPQG*TRAEGE Trigger: TTCTCCTTCGGCTCGCGTCCACCCTTGCGGCATGCA...CTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAGACAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS-3UTR CCA 90 bp | GTGTCTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGGGTGTTCTCTCGGGGTaGCAGAGTCCTCCCCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: VSDPEAPATRLPVLRVGEGVLSG*QSPPQH Trigger: ATGCTGGGGAGGACTCTGCCACCCCGAGAGAACACC...CTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAGACAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | AGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAGGCTGACCTTACCGAGGGTGTTCTCTCGGGGTaGCAGAGTCCTCCCCAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SHKASGAAGRGDEADLTEGVLSG*QSPPQH Trigger: ATGCTGGGGAGGACTCTGCCACCCCGAGAGAACACC...CTCGGTAAGGTCAGCCTCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR GCA 90 bp | CTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAAGCTGCCCACAGGGCTaGGGCTGTAGATGGAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: LIPKLQPQGFRCCGSGRRSCPQG*GCRWSK Trigger: CTTACTCCATCTACAGCCGCAGCCCTGTGGGCAGCT...TCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | TCTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGGTAGGACCCAGGGCCTaGGGTTTCTTGCTTTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: SDPEAPATRLPVLRVGETVGPRA*GFLLCE Trigger: CTCGCAAAGCAAGAAACCCCAGGCCCTGGGTCCTAC...CGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR GCA 90 bp | CTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAGTCCACGCTGTAGGATaGAGGTCCTGGCTTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: LIPKLQPQGFRCCGSGRRVHAVG*RSWLLG Trigger: ACCAAGAAGCCAGGACCTGCATCCTACAGCGTGGAC...TCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | CTGTTCGGCTTCATACAGGGATGCCATTTCCCTGGGGACTTTGACCCATGCCTTGCCGCGGGGCCGATGTaGCCGCCAAGTGCCGACCCA | + |
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Preference number: 4 (lower is better) Translates to: LFGFIQGCHFPGDFDPCLAAGPM*PPSADP Trigger: TGGGTCGGCACTTGGCGGCCACATCGGCCCCGCGGC...AAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTATGAAGCCGAACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS-3UTR TCA 90 bp | TCTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGTTTGCTTATGACTCGTaGGCCCAAGAGCGAAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SDPEAPATRLPVLRVGETFAYDS*AQERRH Trigger: GTGCCTTCGCTCTTGGGCTCACGAGTCATAAGCAAA...CGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | ATACAGGGATGCCATTTCCCTGGGGACTTTGACCCATGCCTTAGACCTCAGTCCTGTAGAGCGCCGCGATaGGGCCGCGGGGCCGATGTG | + |
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Preference number: 4 (lower is better) Translates to: IQGCHFPGDFDPCLRPQSCRAPR*GRGADV Trigger: CACATCGGCCCCGCGGCCCCATCGCGGCGCTCTACA...GGACTGAGGTCTAAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS-3UTR GCA 90 bp | AGGCTGACCTTACCGAGCCAGCTGTTCGGCTTCATACAGGGATGCCATTTCCCTGATGTGGCCGCCAAGTaGCGACCCAGACTTCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: RLTLPSQLFGFIQGCHFPDVAAK*RPRLLS Trigger: GCTCAGAAGTCTGGGTCGGCACTTGGCGGCCACATC...AGGGAAATGGCATCCCTGTATGAAGCCGAACAGCTGGCTCGGTAAGGTCAGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS-3UTR CCA 90 bp | AGGCTGACCTTACCGAGCCAGCTGTTCGGCTTCATACAGGGATGCCATTTCCCTAGTTTCGGGGAGCGATaGTATGCCGAGGAGCGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: RLTLPSQLFGFIQGCHFPSFGER*YAEERW Trigger: CCAGCGCTCCTCGGCATACCATCGCTCCCCGAAACT...AGGGAAATGGCATCCCTGTATGAAGCCGAACAGCTGGCTCGGTAAGGTCAGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | ATACAGGGATGCCATTTCCCTGGGGACTTTGACCCATGCCTTAGACCTCAGTCCGTAGGCACAAGGGCCTaGGGTCTTGCTGAGGTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: IQGCHFPGDFDPCLRPQSVGTRA*GLAEVL Trigger: GAGGACCTCAGCAAGACCCCAGGCCCTTGTGCCTAC...GGACTGAGGTCTAAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR GCA 90 bp | ATACAGGGATGCCATTTCCCTGGGGACTTTGACCCATGCCTTAGACCTCAGTCCAGCTGCCCACAGGGCTaGGGCTGTAGATGGAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: IQGCHFPGDFDPCLRPQSSCPQG*GCRWSK Trigger: CTTACTCCATCTACAGCCGCAGCCCTGTGGGCAGCT...GGACTGAGGTCTAAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | AGGCTGACCTTACCGAGCCAGCTGTTCGGCTTCATACAGGGATGCCATTTCCCTTGGCAGCTTGTATTTTaGCCCCGGGCCTCTGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: RLTLPSQLFGFIQGCHFPWQLVF*PRASVE Trigger: CTCTACAGAGGCCCGGGGCCAAAATACAAGCTGCCA...AGGGAAATGGCATCCCTGTATGAAGCCGAACAGCTGGCTCGGTAAGGTCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS-3UTR CCA 90 bp | ATACAGGGATGCCATTTCCCTGGGGACTTTGACCCATGCCTTAGACCTCAGTCCGTAGGACCCAGGGCCTaGGGTTTCTTGCTTTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: IQGCHFPGDFDPCLRPQSVGPRA*GFLLCE Trigger: CTCGCAAAGCAAGAAACCCCAGGCCCTGGGTCCTAC...GGACTGAGGTCTAAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR TCA 90 bp | ATACAGGGATGCCATTTCCCTGGGGACTTTGACCCATGCCTTAGACCTCAGTCCTTTGCTTATGACTCGTaGGCCCAAGAGCGAAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: IQGCHFPGDFDPCLRPQSFAYDS*AQERRH Trigger: GTGCCTTCGCTCTTGGGCTCACGAGTCATAAGCAAA...GGACTGAGGTCTAAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CCA 90 bp | TCATACAGGGATGCCATTTCCCTGGGGACTTTGACCCATGCCTTAGACCTCAGTGTAACCGGTGTTCGTTaGCAGCTTGTATTTTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: SYRDAISLGTLTHALDLSVTGVR*QLVFWP Trigger: GGGCCAAAATACAAGCTGCCAACGAACACCGGTTAC...ACTGAGGTCTAAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS CCA 90 bp | CACCAGGTAACTCGGCCCGGGTCCGCAGGTTGCATGCCGCAAGGGTaGACGCGAGCCGAAGGAGAAGGCGGGGGCTCGCGGCCGAGACGG | + |
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Preference number: 5 (lower is better) Translates to: HQVTRPGSAGCMPQG*TRAEGEGGGSRPRR Trigger: CCGTCTCGGCCGCGAGCCCCCGCCTTCTCCTTCGGCTCGCGTCCACCCTTGCGGCATGCAACCTGCGGACCCGGGCCGAGTTACCTGGTG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS GCA 90 bp | AGTCATGCGAGCAGGCACCAGGTAACTCGGCCCGGGTCCGCAGGTTaGATGCCGCAAGGGTGGACGCGAGCCGAAGGAGAAGGCGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: SHASRHQVTRPGSAG*MPQGWTRAEGEGGG Trigger: GCCCCCGCCTTCTCCTTCGGCTCGCGTCCACCCTTGCGGCATGCAACCTGCGGACCCGGGCCGAGTTACCTGGTGCCTGCTCGCATGACT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS GCA 90 bp | CGTAGATGGAGAAGGCCGGGGAGCCAACTGTGCCGCGCACAGTCATaGGAGCAGGCACCAGGTAACTCGGCCCGGGTCCGCAGGTTGCAT | + |
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Preference number: 5 (lower is better) Translates to: RRWRRPGSQLCRAQS*EQAPGNSARVRRLH Trigger: ATGCAACCTGCGGACCCGGGCCGAGTTACCTGGTGCCTGCTCGCATGACTGTGCGCGGCACAGTTGGCTCCCCGGCCTTCTCCATCTACG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS GCA 90 bp | TGTGGCTTAGGCGACCGTAGATGGAGAAGGCCGGGGAGCCAACTGTaGCGCGCACAGTCATGCGAGCAGGCACCAGGTAACTCGGCCCGG | + |
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Preference number: 5 (lower is better) Translates to: CGLGDRRWRRPGSQL*RAQSCEQAPGNSAR Trigger: CCGGGCCGAGTTACCTGGTGCCTGCTCGCATGACTGTGCGCGGCACAGTTGGCTCCCCGGCCTTCTCCATCTACGGTCGCCTAAGCCACA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS CCA 90 bp | GGTATGCCGAGGAGCGCTGGGGTACGTCACATTTCTCGCGCGTTCTaGGTAGTACCTGCCCGGTCCCGGAGTGAGGACAGGCGCCGTGTG | + |
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Preference number: 5 (lower is better) Translates to: GMPRSAGVRHISRAF*VVPARSRSEDRRRV Trigger: CACACGGCGCCTGTCCTCACTCCGGGACCGGGCAGGTACTACCCAGAACGCGCGAGAAATGTGACGTACCCCAGCGCTCCTCGGCATACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS-3UTR CAA 90 bp | CTGATCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGACAAGGGCCTGGGGTCTaGCTGAGGTCCTCGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: LIPKLQPQGFRCCGSGRRQGPGV*LRSSKQ Trigger: CTGCTTCGAGGACCTCAGCAAGACCCCAGGCCCTTG...TCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS-3UTR CAA 90 bp | AGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAGGCTGACCTTACCGAGCAAGGGCCTGGGGTCTaGCTGAGGTCCTCGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: SHKASGAAGRGDEADLTEQGPGV*LRSSKQ Trigger: CTGCTTCGAGGACCTCAGCAAGACCCCAGGCCCTTG...CTCGGTAAGGTCAGCCTCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS CCA 90 bp | GGCTCGCGGCCGAGACGGGTCGTGCAGTTTGTAACCGGTGTTCGTTaGCAGCTTGTATTTTGGCCCCGGGCCTCTGTAGAGCGCCGCGAT | + |
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Preference number: 5 (lower is better) Translates to: GSRPRRVVQFVTGVR*QLVFWPRASVERRD Trigger: ATCGCGGCGCTCTACAGAGGCCCGGGGCCAAAATACAAGCTGCCAACGAACACCGGTTACAAACTGCACGACCCGTCTCGGCCGCGAGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS CCA 90 bp | CGAGGATGCCCCAGTTTCGGGGAGCGATGGTATGCCGAGGAGCGCTaGGGTACGTCACATTTCTCGCGCGTTCTGGGTAGTACCTGCCCG | + |
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Preference number: 5 (lower is better) Translates to: RGCPSFGERWYAEER*GTSHFSRVLGSTCP Trigger: CGGGCAGGTACTACCCAGAACGCGCGAGAAATGTGACGTACCCCAGCGCTCCTCGGCATACCATCGCTCCCCGAAACTGGGGCATCCTCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS TCA 90 bp | TCACATTTCTCGCGCGTTCTGGGTAGTACCTGCCCGGTCCCGGAGTaGGGACAGGCGCCGTGTGGCTTAGGCGACCGTAGATGGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: SHFSRVLGSTCPVPE*GQAPCGLGDRRWRR Trigger: CCTTCTCCATCTACGGTCGCCTAAGCCACACGGCGCCTGTCCTCACTCCGGGACCGGGCAGGTACTACCCAGAACGCGCGAGAAATGTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS-3UTR CAA 90 bp | TCCAGCCACAAGGCTTCCGGTGCTGCGGGTCGGGGAGACGAGGCTGACCTTACCTTGGCAGCTTGTATTTaGGCCCCGGGCCTCTGTAGA | + |
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Preference number: 5 (lower is better) Translates to: SSHKASGAAGRGDEADLTLAACI*APGLCR Trigger: TCTACAGAGGCCCGGGGCCAAAATACAAGCTGCCAA...GGTAAGGTCAGCCTCGTCTCCCCGACCCGCAGCACCGGAAGCCTTGTGGCTGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS CCA 90 bp | CCCTCGACTCCAGACCACCTTGTCCACGCTGTAGGATGCAGGTCCTaGCTTCTTGGTGTTCTCTCGGGGTGGCAGAGTCCTCCCCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: PSTPDHLVHAVGCRS*LLGVLSGWQSPPQH Trigger: ATGCTGGGGAGGACTCTGCCACCCCGAGAGAACACCAAGAAGCCAGGACCTGCATCCTACAGCGTGGACAAGGTGGTCTGGAGTCGAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS TCA 90 bp | GGCTGCGGCTGTAGATGGAGTAAGTTGGGGCTGAGACTTTGCTTATaGCTCGTGAGCCCAAGAGCGAAGGCACGGTGTAGGACCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: GCGCRWSKLGLRLCL*LVSPRAKARCRTQG Trigger: GCCCTGGGTCCTACACCGTGCCTTCGCTCTTGGGCTCACGAGTCATAAGCAAAGTCTCAGCCCCAACTTACTCCATCTACAGCCGCAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS TCA 90 bp | CGTCCACGTGGTACTGTATCATGGGGGCTAGGTAGTCTGAGTGTCTaGTCCCGAAGCTCCAGCCACAAGGCTTCCGGTGCTTGTCCACGC | + |
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Preference number: 5 (lower is better) Translates to: RPRGTVSWGLGSLSV*SRSSSHKASGACPR Trigger: GCGTGGACAAGCACCGGAAGCCTTGTGGCTGGAGCTTCGGGATCAGACACTCAGACTACCTAGCCCCCATGATACAGTACCACGTGGACG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238996.2 |
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| CDS-3UTR CAA 90 bp | CTGTTCGGCTTCATACAGGGATGCCATTTCCCTGGGGACTTTGACCCATGCCTTTGTAACCGGTGTTCGTaGGCAGCTTGTATTTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: LFGFIQGCHFPGDFDPCLCNRCS*AACILA Trigger: GGCCAAAATACAAGCTGCCAACGAACACCGGTTACA...AAGGCATGGGTCAAAGTCCCCAGGGAAATGGCATCCCTGTATGAAGCCGAACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049968.9 |
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| CDS CCA 72 bp | ACTCGGCCCGGGTCCGCAGGTTGCATGCCGCAAGGGTaGACGCGAGCCGAAGGAGAAGGCGGGGGCTCGCGG | + |
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Preference number: 6 (lower is better) Translates to: TRPGSAGCMPQG*TRAEGEGGGSR Trigger: CCGCGAGCCCCCGCCTTCTCCTTCGGCTCGCGTCCACCCTTGCGGCATGCAACCTGCGGACCCGGGCCGAGT 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS CAA 90 bp | CAGTCATGCGAGCAGGCACCAGGTAACTCGGCCCGGGTCCGCAGGTaGCATGCCGCAAGGGTGGACGCGAGCCGAAGGAGAAGGCGGGGG | + |
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Preference number: 6 (lower is better) Translates to: QSCEQAPGNSARVRR*HAARVDASRRRRRG Trigger: CCCCCGCCTTCTCCTTCGGCTCGCGTCCACCCTTGCGGCATGCAACCTGCGGACCCGGGCCGAGTTACCTGGTGCCTGCTCGCATGACTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS GCA 72 bp | AGAAGGCCGGGGAGCCAACTGTGCCGCGCACAGTCATaGGAGCAGGCACCAGGTAACTCGGCCCGGGTCCGC | + |
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Preference number: 6 (lower is better) Translates to: RRPGSQLCRAQS*EQAPGNSARVR Trigger: GCGGACCCGGGCCGAGTTACCTGGTGCCTGCTCGCATGACTGTGCGCGGCACAGTTGGCTCCCCGGCCTTCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS TCA 72 bp | TCGCGCGTTCTGGGTAGTACCTGCCCGGTCCCGGAGTaGGGACAGGCGCCGTGTGGCTTAGGCGACCGTAGA | + |
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Preference number: 6 (lower is better) Translates to: SRVLGSTCPVPE*GQAPCGLGDRR Trigger: TCTACGGTCGCCTAAGCCACACGGCGCCTGTCCTCACTCCGGGACCGGGCAGGTACTACCCAGAACGCGCGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS TCA 72 bp | TCACTACGTGGTAGGCACAAGGGCCTGGGGTCTTGCTaGGGTCCTCGAAGCAGCTGCCCACAGGGCTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: SLRGRHKGLGSC*GPRSSCPQGCG Trigger: GCCGCAGCCCTGTGGGCAGCTGCTTCGAGGACCTCAGCAAGACCCCAGGCCCTTGTGCCTACCACGTAGTGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS GCA 72 bp | GGCGACCGTAGATGGAGAAGGCCGGGGAGCCAACTGTaGCGCGCACAGTCATGCGAGCAGGCACCAGGTAAC | + |
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Preference number: 6 (lower is better) Translates to: GDRRWRRPGSQL*RAQSCEQAPGN Trigger: GTTACCTGGTGCCTGCTCGCATGACTGTGCGCGGCACAGTTGGCTCCCCGGCCTTCTCCATCTACGGTCGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS CAA 90 bp | GGGCTCGCGGCCGAGACGGGTCGTGCAGTTTGTAACCGGTGTTCGTaGGCAGCTTGTATTTTGGCCCCGGGCCTCTGTAGAGCGCCGCGA | + |
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Preference number: 6 (lower is better) Translates to: GLAAETGRAVCNRCS*AACILAPGLCRAPR Trigger: TCGCGGCGCTCTACAGAGGCCCGGGGCCAAAATACAAGCTGCCAACGAACACCGGTTACAAACTGCACGACCCGTCTCGGCCGCGAGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS CCA 72 bp | AGGAGCGCTGGGGTACGTCACATTTCTCGCGCGTTCTaGGTAGTACCTGCCCGGTCCCGGAGTGAGGACAGG | + |
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Preference number: 6 (lower is better) Translates to: RSAGVRHISRAF*VVPARSRSEDR Trigger: CCTGTCCTCACTCCGGGACCGGGCAGGTACTACCCAGAACGCGCGAGAAATGTGACGTACCCCAGCGCTCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS GCA 72 bp | AGGACCCAGGGCCTGGGGTTTCTTGCTTTGCGAGGATaGCCCAGTTTCGGGGAGCGATGGTATGCCGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: RTQGLGFLALRG*PSFGERWYAEE Trigger: CTCCTCGGCATACCATCGCTCCCCGAAACTGGGGCATCCTCGCAAAGCAAGAAACCCCAGGCCCTGGGTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS GCA 72 bp | CCCTCGACTCCAGACCACCTTGTCCACGCTGTAGGATaGAGGTCCTGGCTTCTTGGTGTTCTCTCGGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: PSTPDHLVHAVG*RSWLLGVLSGW Trigger: CCACCCCGAGAGAACACCAAGAAGCCAGGACCTGCATCCTACAGCGTGGACAAGGTGGTCTGGAGTCGAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS GCA 72 bp | GCCACAAGGCTTCCGGTGCTTGTCCACGCTGTAGGATaGAGGTCCTGGCTTCTTGGTGTTCTCTCGGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: ATRLPVLVHAVG*RSWLLGVLSGW Trigger: CCACCCCGAGAGAACACCAAGAAGCCAGGACCTGCATCCTACAGCGTGGACAAGCACCGGAAGCCTTGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238996.2 |
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| CDS CCA 72 bp | CCCAGTTTCGGGGAGCGATGGTATGCCGAGGAGCGCTaGGGTACGTCACATTTCTCGCGCGTTCTGGGTAGT | + |
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Preference number: 6 (lower is better) Translates to: PSFGERWYAEER*GTSHFSRVLGS Trigger: ACTACCCAGAACGCGCGAGAAATGTGACGTACCCCAGCGCTCCTCGGCATACCATCGCTCCCCGAAACTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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| CDS CCA 72 bp | CCTTGTCCACGCTGTAGGATGCAGGTCCTGGCTTCTTaGTGTTCTCTCGGGGTGGCAGAGTCCTCCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: PCPRCRMQVLAS*CSLGVAESSPA Trigger: TGCTGGGGAGGACTCTGCCACCCCGAGAGAACACCAAGAAGCCAGGACCTGCATCCTACAGCGTGGACAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS CCA 72 bp | GCTTGTCCACGCTGTAGGATGCAGGTCCTGGCTTCTTaGTGTTCTCTCGGGGTGGCAGAGTCCTCCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: ACPRCRMQVLAS*CSLGVAESSPA Trigger: TGCTGGGGAGGACTCTGCCACCCCGAGAGAACACCAAGAAGCCAGGACCTGCATCCTACAGCGTGGACAAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238996.2 |
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| CDS CAA 72 bp | GCAGTTTGTAACCGGTGTTCGTTGGCAGCTTGTATTTaGGCCCCGGGCCTCTGTAGAGCGCCGCGATGGGGC | + |
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Preference number: 6 (lower is better) Translates to: AVCNRCSLAACI*APGLCRAPRWG Trigger: GCCCCATCGCGGCGCTCTACAGAGGCCCGGGGCCAAAATACAAGCTGCCAACGAACACCGGTTACAAACTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS CCA 72 bp | CCAGACCACCTTGTCCACGCTGTAGGATGCAGGTCCTaGCTTCTTGGTGTTCTCTCGGGGTGGCAGAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: PDHLVHAVGCRS*LLGVLSGWQSP Trigger: AGGACTCTGCCACCCCGAGAGAACACCAAGAAGCCAGGACCTGCATCCTACAGCGTGGACAAGGTGGTCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 |
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| CDS CCA 72 bp | CCGAGACGGGTCGTGCAGTTTGTAACCGGTGTTCGTTaGCAGCTTGTATTTTGGCCCCGGGCCTCTGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: PRRVVQFVTGVR*QLVFWPRASVE Trigger: CTCTACAGAGGCCCGGGGCCAAAATACAAGCTGCCAACGAACACCGGTTACAAACTGCACGACCCGTCTCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS CAA 72 bp | GCCGAGACGGGTCGTGCAGTTTGTAACCGGTGTTCGTaGGCAGCTTGTATTTTGGCCCCGGGCCTCTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: AETGRAVCNRCS*AACILAPGLCR Trigger: TCTACAGAGGCCCGGGGCCAAAATACAAGCTGCCAACGAACACCGGTTACAAACTGCACGACCCGTCTCGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049968.9 ENSMUST00000238996.2 |
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| CDS TCA 72 bp | TGTAGATGGAGTAAGTTGGGGCTGAGACTTTGCTTATaGCTCGTGAGCCCAAGAGCGAAGGCACGGTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: CRWSKLGLRLCL*LVSPRAKARCR Trigger: CCTACACCGTGCCTTCGCTCTTGGGCTCACGAGTCATAAGCAAAGTCTCAGCCCCAACTTACTCCATCTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049968.9 ENSMUST00000227834.2 ENSMUST00000238996.2 |
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