RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ODF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061923

Ensembl transcript IDs: ENSMUST00000081966.5

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp CACACTGGAACTACACGGGCTCTGGGAAGGGGACGAGAAATGCTGAAGAGCTGCAGGGATAGCAGGGGTTaGAAGGGTCGCAGGGGCCGC +
Preference number: 4 (lower is better)
Translates to: HTGTTRALGRGREMLKSCRDSRG*KGRRGR
Trigger: GCGGCCCCTGCGACCCTTGCAACCCCTGCTATCCCT...GCAGCTCTTCAGCATTTCTCGTCCCCTTCCCAGAGCCCGTGTAGTTCCAGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS-3UTR CCA 90 bp TTCCTACACACTGGAACTACACGGGCTCTGGGAAGGGGACGAGAAATGCTGAAGGCTGCAGGGGCTACATaGGTTGCAAGGATTACAGGG +
Preference number: 4 (lower is better)
Translates to: FLHTGTTRALGRGREMLKAAGAT*VARITG
Trigger: CCCTGTAATCCTTGCAACCCATGTAGCCCCTGCAGC...CTTCAGCATTTCTCGTCCCCTTCCCAGAGCCCGTGTAGTTCCAGTGTGTAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS-3UTR GCA 90 bp GTATTAAGTTTCCTACACACTGGAACTACACGGGCTCTGGGAAGGGGACGAGAAAGGGGCTACATGGGTTaGAAGGATTACAGGGAGACG +
Preference number: 4 (lower is better)
Translates to: VLSFLHTGTTRALGRGRERGYMG*KDYRET
Trigger: CGTCTCCCTGTAATCCTTGCAACCCATGTAGCCCCT...TTCTCGTCCCCTTCCCAGAGCCCGTGTAGTTCCAGTGTGTAGGAAACTTAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS-3UTR CCA 90 bp TTCCTACACACTGGAACTACACGGGCTCTGGGAAGGGGACGAGAAATGCTGAAGCTTCTCATCCACACATaGCGGCAGACTGAACTCTTT +
Preference number: 4 (lower is better)
Translates to: FLHTGTTRALGRGREMLKLLIHT*RQTELF
Trigger: AAAGAGTTCAGTCTGCCGCCATGTGTGGATGAGAAG...CTTCAGCATTTCTCGTCCCCTTCCCAGAGCCCGTGTAGTTCCAGTGTGTAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS-3UTR TCA 90 bp TGCAATTCTGTATTAAGTTTCCTACACACTGGAACTACACGGGCTCTGGGAAGGCACATGGCGGCAGACTaGACTCTTTGCAGATGTTCA +
Preference number: 4 (lower is better)
Translates to: CNSVLSFLHTGTTRALGRHMAAD*TLCRCS
Trigger: TGAACATCTGCAAAGAGTTCAGTCTGCCGCCATGTG...CCTTCCCAGAGCCCGTGTAGTTCCAGTGTGTAGGAAACTTAATACAGAATTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS-3UTR GCA 90 bp TGCAATTCTGTATTAAGTTTCCTACACACTGGAACTACACGGGCTCTGGGAAGGCCAGTATGTTACTGCTaGAGCAAGACGAGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: CNSVLSFLHTGTTRALGRPVCYC*SKTRPE
Trigger: TTCTGGCCTCGTCTTGCTGCAGCAGTAACATACTGG...CCTTCCCAGAGCCCGTGTAGTTCCAGTGTGTAGGAAACTTAATACAGAATTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS-3UTR CCA 90 bp ATTAAGTTTCCTACACACTGGAACTACACGGGCTCTGGGAAGGGGACGAGAAATTGTAACTGTACTTTTTaGATCCGAGGCAGTCGTACC +
Preference number: 4 (lower is better)
Translates to: IKFPTHWNYTGSGKGTRNCNCTF*IRGSRT
Trigger: GGTACGACTGCCTCGGATCCAAAAAGTACAGTTACA...ATTTCTCGTCCCCTTCCCAGAGCCCGTGTAGTTCCAGTGTGTAGGAAACTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS CCA 90 bp AGCACGGGTAGTAGAGGTCACACAGGCCACAGGAGCGGGATCGCTTaGAGTAGCAGAGGCAGTAGGGATAGGGATGCAGGTCGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: STGSRGHTGHRSGIA*SSRGSRDRDAGRSS
Trigger: GCTGCTGCGACCTGCATCCCTATCCCTACTGCCTCTGCTACTCCAAGCGATCCCGCTCCTGTGGCCTGTGTGACCTCTACTACCCGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 90 bp CCCTCTCGGCCGACACGCAGACCTTCCCATCTTTCACGCGCACTTTaGCTTGATCAGGTTCAAAGCCGCACACATTCACCGATCCCAGTA +
Preference number: 5 (lower is better)
Translates to: PSRPTRRPSHLSRAL*LDQVQSRTHSPIPV
Trigger: TACTGGGATCGGTGAATGTGTGCGGCTTTGAACCTGATCAAGTCAAAGTGCGCGTGAAAGATGGGAAGGTCTGCGTGTCGGCCGAGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS-3UTR CAA 90 bp CCTACACACTGGAACTACACGGGCTCTGGGAAGGGGACGAGAAATGCTGAAGAGCAGGGGCTACATGGGTaGCAAGGATTACAGGGAGAC +
Preference number: 5 (lower is better)
Translates to: PTHWNYTGSGKGTRNAEEQGLHG*QGLQGD
Trigger: GTCTCCCTGTAATCCTTGCAACCCATGTAGCCCCTG...CTCTTCAGCATTTCTCGTCCCCTTCCCAGAGCCCGTGTAGTTCCAGTGTGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS CCA 90 bp GCTACATGGGTTGCAAGGATTACAGGGAGACGTGCAAGGGTAACATaGAGACTCGATCTTGACACAGCTGCCGAGCCCGTAGGAGTACGT +
Preference number: 5 (lower is better)
Translates to: ATWVARITGRRARVT*RLDLDTAAEPVGVR
Trigger: ACGTACTCCTACGGGCTCGGCAGCTGTGTCAAGATCGAGTCTCCATGTTACCCTTGCACGTCTCCCTGTAATCCTTGCAACCCATGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 90 bp AAGGATTACAGGGAGACGTGCAAGGGTAACATGGAGACTCGATCTTaGCACAGCTGCCGAGCCCGTAGGAGTACGTCACGTCCTTCTCAT +
Preference number: 5 (lower is better)
Translates to: KDYRETCKGNMETRS*HSCRARRSTSRPSH
Trigger: ATGAGAAGGACGTGACGTACTCCTACGGGCTCGGCAGCTGTGTCAAGATCGAGTCTCCATGTTACCCTTGCACGTCTCCCTGTAATCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS-3UTR CAA 90 bp CAATTCTGTATTAAGTTTCCTACACACTGGAACTACACGGGCTCTGGGAAGGGGCATGGAGACTCGATCTaGACACAGCTGCCGAGCCCG +
Preference number: 5 (lower is better)
Translates to: QFCIKFPTHWNYTGSGKGHGDSI*TQLPSP
Trigger: CGGGCTCGGCAGCTGTGTCAAGATCGAGTCTCCATG...CCCCTTCCCAGAGCCCGTGTAGTTCCAGTGTGTAGGAAACTTAATACAGAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 90 bp TACTGCTGCAGCAAGACGAGGCCAGAATTCTATTTGTCGTCCTTCTaGGTCTCTCTAAACTGCGGAGCGATGGGCGAAGGCAGTACAGCT +
Preference number: 5 (lower is better)
Translates to: YCCSKTRPEFYLSSF*VSLNCGAMGEGSTA
Trigger: AGCTGTACTGCCTTCGCCCATCGCTCCGCAGTTTAGAGAGACTCAGAAGGACGACAAATAGAATTCTGGCCTCGTCTTGCTGCAGCAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 90 bp TCGGCCGACACGCAGACCTTCCCATCTTTCACGCGCACTTTGACTTaGTCAGGTTCAAAGCCGCACACATTCACCGATCCCAGTATGTTA +
Preference number: 5 (lower is better)
Translates to: SADTQTFPSFTRTLT*SGSKPHTFTDPSML
Trigger: TAACATACTGGGATCGGTGAATGTGTGCGGCTTTGAACCTGATCAAGTCAAAGTGCGCGTGAAAGATGGGAAGGTCTGCGTGTCGGCCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS CCA 90 bp GCTGCCGAGCCCGTAGGAGTACGTCACGTCCTTCTCATCCACACATaGCGGCAGACTGAACTCTTTGCAGATGTTCATGTAACTGTACTT +
Preference number: 5 (lower is better)
Translates to: AAEPVGVRHVLLIHT*RQTELFADVHVTVL
Trigger: AAGTACAGTTACATGAACATCTGCAAAGAGTTCAGTCTGCCGCCATGTGTGGATGAGAAGGACGTGACGTACTCCTACGGGCTCGGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 90 bp AGCAGCAGTACGGGTGCATGTATAAGTCACACAGGCAGCGGGAGCTaGTTTCGTCGATACATCTCAATTGTCTTAATTCTCTGTCCACCT +
Preference number: 5 (lower is better)
Translates to: SSSTGACISHTGSGS*FRRYISIVLILCPP
Trigger: AGGTGGACAGAGAATTAAGACAATTGAGATGTATCGACGAAATCAGCTCCCGCTGCCTGTGTGACTTATACATGCACCCGTACTGCTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 90 bp CGTAGGAGTACGTCACGTCCTTCTCATCCACACATGGCGGCAGACTaGACTCTTTGCAGATGTTCATGTAACTGTACTTTTTGGATCCGA +
Preference number: 5 (lower is better)
Translates to: RRSTSRPSHPHMAAD*TLCRCSCNCTFWIR
Trigger: TCGGATCCAAAAAGTACAGTTACATGAACATCTGCAAAGAGTTCAGTCTGCCGCCATGTGTGGATGAGAAGGACGTGACGTACTCCTACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS CCA 72 bp AGTAGAGGTCACACAGGCCACAGGAGCGGGATCGCTTaGAGTAGCAGAGGCAGTAGGGATAGGGATGCAGGT +
Preference number: 6 (lower is better)
Translates to: SRGHTGHRSGIA*SSRGSRDRDAG
Trigger: ACCTGCATCCCTATCCCTACTGCCTCTGCTACTCCAAGCGATCCCGCTCCTGTGGCCTGTGTGACCTCTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS CCA 72 bp GTTGCAAGGATTACAGGGAGACGTGCAAGGGTAACATaGAGACTCGATCTTGACACAGCTGCCGAGCCCGTA +
Preference number: 6 (lower is better)
Translates to: VARITGRRARVT*RLDLDTAAEPV
Trigger: TACGGGCTCGGCAGCTGTGTCAAGATCGAGTCTCCATGTTACCCTTGCACGTCTCCCTGTAATCCTTGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS CAA 90 bp CTCGGCCGACACGCAGACCTTCCCATCTTTCACGCGCACTTTGACTaGATCAGGTTCAAAGCCGCACACATTCACCGATCCCAGTATGTT +
Preference number: 6 (lower is better)
Translates to: LGRHADLPIFHAHFD*IRFKAAHIHRSQYV
Trigger: AACATACTGGGATCGGTGAATGTGTGCGGCTTTGAACCTGATCAAGTCAAAGTGCGCGTGAAAGATGGGAAGGTCTGCGTGTCGGCCGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 72 bp AGCAAGACGAGGCCAGAATTCTATTTGTCGTCCTTCTaGGTCTCTCTAAACTGCGGAGCGATGGGCGAAGGC +
Preference number: 6 (lower is better)
Translates to: SKTRPEFYLSSF*VSLNCGAMGEG
Trigger: GCCTTCGCCCATCGCTCCGCAGTTTAGAGAGACTCAGAAGGACGACAAATAGAATTCTGGCCTCGTCTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 72 bp ACGCAGACCTTCCCATCTTTCACGCGCACTTTGACTTaGTCAGGTTCAAAGCCGCACACATTCACCGATCCC +
Preference number: 6 (lower is better)
Translates to: TQTFPSFTRTLT*SGSKPHTFTDP
Trigger: GGGATCGGTGAATGTGTGCGGCTTTGAACCTGATCAAGTCAAAGTGCGCGTGAAAGATGGGAAGGTCTGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS CAA 72 bp CACGCAGACCTTCCCATCTTTCACGCGCACTTTGACTaGATCAGGTTCAAAGCCGCACACATTCACCGATCC +
Preference number: 6 (lower is better)
Translates to: HADLPIFHAHFD*IRFKAAHIHRS
Trigger: GGATCGGTGAATGTGTGCGGCTTTGAACCTGATCAAGTCAAAGTGCGCGTGAAAGATGGGAAGGTCTGCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS CCA 72 bp CCCGTAGGAGTACGTCACGTCCTTCTCATCCACACATaGCGGCAGACTGAACTCTTTGCAGATGTTCATGTA +
Preference number: 6 (lower is better)
Translates to: PVGVRHVLLIHT*RQTELFADVHV
Trigger: TACATGAACATCTGCAAAGAGTTCAGTCTGCCGCCATGTGTGGATGAGAAGGACGTGACGTACTCCTACGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS GCA 72 bp CAAAGCCGCACACATTCACCGATCCCAGTATGTTACTaGTGCAGCAAGACGAGGCCAGAATTCTATTTGTCG +
Preference number: 6 (lower is better)
Translates to: QSRTHSPIPVCY*CSKTRPEFYLS
Trigger: CGACAAATAGAATTCTGGCCTCGTCTTGCTGCAGCAGTAACATACTGGGATCGGTGAATGTGTGCGGCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5
CDS TCA 72 bp ACGTCACGTCCTTCTCATCCACACATGGCGGCAGACTaGACTCTTTGCAGATGTTCATGTAACTGTACTTTT +
Preference number: 6 (lower is better)
Translates to: TSRPSHPHMAAD*TLCRCSCNCTF
Trigger: AAAAGTACAGTTACATGAACATCTGCAAAGAGTTCAGTCTGCCGCCATGTGTGGATGAGAAGGACGTGACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081966.5