Pregenerated sensors for ODAPH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096035Ensembl transcript IDs: ENSMUST00000178614.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTAATCCAAACTCCTAGGCGCCGATTCTTTTaGTTCAACAAGTCTGCGCTT | + |
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Preference number: 2 (lower is better) Translates to: TGAVTARFCKQKCVIQTPRRRFF*FNKSAL Trigger: AAGCGCAGACTTGTTGAAGCAAAAGAATCGGCGCCT...AGGAGTTTGGATTACACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| 3UTR-3UTR TCA 90 bp | ACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTAATCCAAACTCCTTCTCGTCACTGTCATTaGGGGTACTTAATCTTCCAA | + |
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Preference number: 2 (lower is better) Translates to: TGAVTARFCKQKCVIQTPSRHCH*GYLIFQ Trigger: TTGGAAGATTAAGTACCCTCAATGACAGTGACGAGA...AGGAGTTTGGATTACACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| 3UTR CCA 72 bp | CGCCCACTAAAAGACTTTATTTGCACTAATATCCTGTaGAATAAGACTGGTGCCGTTACGGCCAGATTTTGT | + |
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Preference number: 3 (lower is better) Translates to: RPLKDFICTNIL*NKTGAVTARFC Trigger: ACAAAATCTGGCCGTAACGGCACCAGTCTTATTCCACAGGATATTAGTGCAAATAAAGTCTTTTAGTGGGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR CCA 90 bp | TCCTGTGGAATAAGACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTCGCGGCCTGTAGAATaGCCAGAACTGGAAGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: SCGIRLVPLRPDFVSKNVSRPVE*PELEAA Trigger: CGCCGCTTCCAGTTCTGGCCATTCTACAGGCCGCGA...CACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGTCTTATTCCACAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR TCA 90 bp | ACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTAATCCAAACTCCTCCTGCTCTCCTCAGATaGGCTTCCGCTCTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TGAVTARFCKQKCVIQTPPALLR*ASALLL Trigger: CAGCAGCAGAGCGGAAGCTCATCTGAGGAGAGCAGG...AGGAGTTTGGATTACACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR CCA 90 bp | TGGAATAAGACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTAATCAAACGTGGGTGTCCTTaGGATGGGCTGGGCCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: WNKTGAVTARFCKQKCVIKRGCP*DGLGPC Trigger: ACAAGGGCCCAGCCCATCCCAAGGACACCCACGTTT...GATTACACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGTCTTATTCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR CCA 90 bp | AATAAGACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTAATCCAATGGGTGTCCTTGGGATaGGCTGGGCCCTTGTTACCA | + |
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Preference number: 4 (lower is better) Translates to: NKTGAVTARFCKQKCVIQWVSLG*AGPLLP Trigger: TGGTAACAAGGGCCCAGCCCATCCCAAGGACACCCA...TTGGATTACACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGTCTTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR CCA 90 bp | TCCTGTGGAATAAGACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGGTGGAAAAGAAAACGTaGGTGTCCTTGGGATGGGCT | + |
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Preference number: 4 (lower is better) Translates to: SCGIRLVPLRPDFVSKNVVEKKT*VSLGWA Trigger: AGCCCATCCCAAGGACACCCACGTTTTCTTTTCCAC...CACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGTCTTATTCCACAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR CCA 90 bp | TCCTGTGGAATAAGACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGGAAGCGGCGGTTGTTTaGAAGGAAGAAAGGGAACCT | + |
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Preference number: 4 (lower is better) Translates to: SCGIRLVPLRPDFVSKNVEAAVV*KEEREP Trigger: AGGTTCCCTTTCTTCCTTCCAAACAACCGCCGCTTC...CACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGTCTTATTCCACAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR TCA 90 bp | ACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTAATCCAAACTCCTTTACCACCAACCAGCTaGCCAGTAACCAGGAGACAT | + |
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Preference number: 4 (lower is better) Translates to: TGAVTARFCKQKCVIQTPLPPTS*PVTRRH Trigger: ATGTCTCCTGGTTACTGGTCAGCTGGTTGGTGGTAA...AGGAGTTTGGATTACACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR GCA 90 bp | TGGAATAAGACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTAATCGAGCTTCCGCTCTGCTaGTGTCTTCTAAGGATGAGT | + |
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Preference number: 4 (lower is better) Translates to: WNKTGAVTARFCKQKCVIELPLC*CLLRMS Trigger: ACTCATCCTTAGAAGACAGCAGCAGAGCGGAAGCTC...GATTACACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGTCTTATTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR GCA 90 bp | TCCTGTGGAATAAGACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTACATCTTGTCCTTCTaGTGTAGTTACCACCAACCA | + |
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Preference number: 4 (lower is better) Translates to: SCGIRLVPLRPDFVSKNVYILSF*CSYHQP Trigger: TGGTTGGTGGTAACTACAGCAGAAGGACAAGATGTA...CACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGTCTTATTCCACAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS CCA 90 bp | GTTACCAGATTCCTTGTGGTGGGCGGAGGAGTGAGTGTGAAGATCTaGCAGTCTGTAGGCTTTGCGTTATTTTGTGAGCCGCCAGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: VTRFLVVGGGVSVKI*QSVGFALFCEPPGG Trigger: CCCTCCTGGCGGCTCACAAAATAACGCAAAGCCTACAGACTGCCAGATCTTCACACTCACTCCTCCGCCCACCACAAGGAATCTGGTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS TCA 90 bp | AGTGAGTGTGAAGATCTGGCAGTCTGTAGGCTTTGCGTTATTTTGTaGGCCGCCAGGAGGGGTGACTACATCTTGTCCTTCTGCTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: SECEDLAVCRLCVIL*AARRGDYILSFCCS Trigger: ACTACAGCAGAAGGACAAGATGTAGTCACCCCTCCTGGCGGCTCACAAAATAACGCAAAGCCTACAGACTGCCAGATCTTCACACTCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR CAA 90 bp | ACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGTAATCCAAACTCCTGGATGGGCTGGGCCCTaGTTACCAGATTCCTTGTGG | + |
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Preference number: 5 (lower is better) Translates to: TGAVTARFCKQKCVIQTPGWAGP*LPDSLW Trigger: CCACAAGGAATCTGGTAACAAGGGCCCAGCCCATCC...AGGAGTTTGGATTACACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS-3UTR CAA 90 bp | TCCTGTGGAATAAGACTGGTGCCGTTACGGCCAGATTTTGTAAGCAAAAATGTGGGAAGCGGCGGTTGTTaGGAAGGAAGAAAGGGAACC | + |
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Preference number: 5 (lower is better) Translates to: SCGIRLVPLRPDFVSKNVGSGGC*EGRKGT Trigger: GGTTCCCTTTCTTCCTTCCAAACAACCGCCGCTTCC...CACATTTTTGCTTACAAAATCTGGCCGTAACGGCACCAGTCTTATTCCACAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS CCA 72 bp | CCTGTAGAATGGCCAGAACTGGAAGCGGCGGTTGTTTaGAAGGAAGAAAGGGAACCTCGGGGAGAAGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: PVEWPELEAAVV*KEEREPRGEAR Trigger: CCGGGCTTCTCCCCGAGGTTCCCTTTCTTCCTTCCAAACAACCGCCGCTTCCAGTTCTGGCCATTCTACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS CAA 72 bp | GCCTGTAGAATGGCCAGAACTGGAAGCGGCGGTTGTTaGGAAGGAAGAAAGGGAACCTCGGGGAGAAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: ACRMARTGSGGC*EGRKGTSGRSP Trigger: CGGGCTTCTCCCCGAGGTTCCCTTTCTTCCTTCCAAACAACCGCCGCTTCCAGTTCTGGCCATTCTACAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS CCA 72 bp | CCCTTGGTGGAAAAGAAAACGTGGGTGTCCTTGGGATaGGCTGGGCCCTTGTTACCAGATTCCTTGTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: PLVEKKTWVSLG*AGPLLPDSLWW Trigger: CCACCACAAGGAATCTGGTAACAAGGGCCCAGCCCATCCCAAGGACACCCACGTTTTCTTTTCCACCAAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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| CDS CCA 72 bp | TTCCTTGTGGTGGGCGGAGGAGTGAGTGTGAAGATCTaGCAGTCTGTAGGCTTTGCGTTATTTTGTGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: FLVVGGGVSVKI*QSVGFALFCEP Trigger: CGGCTCACAAAATAACGCAAAGCCTACAGACTGCCAGATCTTCACACTCACTCCTCCGCCCACCACAAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178614.3 |
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