Pregenerated sensors for ODAM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009580Ensembl transcript IDs: ENSMUST00000113274.3, ENSMUST00000129757.9
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GTGTGTGCGCGCACACATGAGTGCACTTGGGTGTCACATGAATGTTaGGAAGATTATCATTGCAATCAAGTTTCACTATATTATGCAATG | + |
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Preference number: 2 (lower is better) Translates to: VCARTHECTWVSHEC*EDYHCNQVSLYYAM Trigger: CATTGCATAATATAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGTGCACTCATGTGTGCGCGCACACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGGGCGTCCTGAGACCTaGGCCTGCTGCTGCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLGRPET*ACCCCR Trigger: TCTGCAGCAGCAGCAGGCTCAGGTCTCAGGACGCCC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGGTGGTGTCTGCTGCTaGGAGAGGTCTGGCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLGGVCC*ERSGWP Trigger: TGGCCAGCCAGACCTCTCTCAGCAGCAGACACCACC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGCTGTGGTGAGGATGTaGCGGTCTGAGGCTGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLAVVRM*RSEAAP Trigger: GGGAGCAGCCTCAGACCGTCACATCCTCACCACAGC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR GCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAAGCTGCTGCCCTGTGTaGTGTGGTGAGGATGTGACG | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLSCCPV*CGEDVT Trigger: CGTCACATCCTCACCACAGCACACAGGGCAGCAGCT...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTACCAGCCTGGCCTCCTTaGGCAAGTCCAACCTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLPAWPP*ASPTCL Trigger: AAGACAGGTTGGACTTGCCCAAGGAGGCCAGGCTGG...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTACTGCTGGGTCTGAGGTaGTGTCTGCTGCTGAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLLLGLR*CLLLRE Trigger: CTCTCTCAGCAGCAGACACCACCTCAGACCCAGCAG...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGAGGAATCCAGGAGTTaGAGGCACCCTGGAACTGCA | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLEESRS*RHPGTA Trigger: TGCAGTTCCAGGGTGCCTTCAACTCCTGGATTCCTC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR GCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTATCCTCAAATAGCTGCTaGCCTGTGTGCTGTGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLSSNSC*PVCCGE Trigger: CTCACCACAGCACACAGGGCAGCAGCTATTTGAGGA...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR GCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTACTGTCAAAAGCTAAGTaGTGCTGCCCTCCTGGTACC | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLLSKAK*CCPPGT Trigger: GGTACCAGGAGGGCAGCAGCACTTAGCTTTTGACAG...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGGTGCTGGGCTTTGGTaGAGTTGTAGGCATGAAAAC | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLGAGLW*SCRHEN Trigger: GTTTTCATGCCTACAACTTCACCAAAGCCCAGCACC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGAGTTGAAGGCACCCTaGAACTGCAGTGGCAAAAGT | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLELKAP*NCSGKS Trigger: ACTTTTGCCACTGCAGTTCCAGGGTGCCTTCAACTC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTACCCAGGTTCTGCTTGTaGTGGTGCGAATCCAAATTG | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLPRFCL*WCESKL Trigger: CAATTTGGATTCGCACCACCACAAGCAGAACCTGGG...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTACAGGCTTCCTTCTACTaGCATTCCAGGAGTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLQASFY*HSRSFW Trigger: CCAGAAACTCCTGGAATGCCAGTAGAAGGAAGCCTG...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGATCTTGAGGTACTTTaGCAGGTACCACATAGGACA | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLDLEVL*QVPHRT Trigger: TGTCCTATGTGGTACCTGTCAAAGTACCTCAAGATC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGATCTATCCCAGAAGTaGAAAAATTGTCGGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLDLSQK*KNCRCW Trigger: CCAGCACCGACAATTTTTTCACTTCTGGGATAGATC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR GCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGAGTTTCTGGAGCTGTaGCTACAAAGCTGTCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLEFLEL*LQSCQK Trigger: CTTTTGACAGCTTTGTAGGCACAGCTCCAGAAACTC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| 3UTR CAA 72 bp | CGCACACATGAGTGCACTTGGGTGTCACATGAATGTTaGGAAGATTATCATTGCAATCAAGTTTCACTATAT | + |
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Preference number: 4 (lower is better) Translates to: RTHECTWVSHEC*EDYHCNQVSLY Trigger: ATATAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGTGCACTCATGTGTGCG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTATTAGACTATCAGTCTTaGCCTTCTGTTCTGGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLLDYQS*PSVLEQ Trigger: TTGCTCCAGAACAGAAGGTCAAGACTGATAGTCTAA...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAACCCTGGAACTGCAGTaGCAAAAGTTGACCATTATT | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLTLELQ*QKLTII Trigger: AATAATGGTCAACTTTTGCCACTGCAGTTCCAGGGT...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR TCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTATGCAGTGGCAAAAGTTaGCCATTATTAAGATTCAGG | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLCSGKS*PLLRFR Trigger: CCTGAATCTTAATAATGGTCAACTTTTGCCACTGCA...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGATTGGTTCTTTTTGTaGATAAAGCAGGCTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLDWFFL*IKQASF Trigger: GAAGGAAGCCTGCTTTATCCACAAAAAGAACCAATC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTATTCTGGAGCAATAGTTaGATCTATCCCAGAAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLFWSNS*IYPRSE Trigger: TTCACTTCTGGGATAGATCCAACTATTGCTCCAGAA...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR GCA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTATTCTGCTTGTGGTGGTaGGAATCCAAATTGATTATA | + |
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Preference number: 4 (lower is better) Translates to: TWVSHECLEDYHCNQVSLFCLWW*ESKLII Trigger: TATAATCAATTTGGATTCGCACCACCACAAGCAGAA...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS GCA 90 bp | AAAGCAGGCTTCCTTCTACTGGCATTCCAGGAGTTTCTGGAGCTGTaGCTACAAAGCTGTCAAAAGCTAAGTGCTGCTGCCCTCCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: KAGFLLLAFQEFLEL*LQSCQKLSAAALLV Trigger: TACCAGGAGGGCAGCAGCACTTAGCTTTTGACAGCTTTGTAGGCACAGCTCCAGAAACTCCTGGAATGCCAGTAGAAGGAAGCCTGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS TCA 90 bp | GCCTGGCCTCCTTGGGCAAGTCCAACCTGTCTTGATAAAGGTATCTaGTTTGGGAATAGTCCAGCAAAGCTCTCTAGTGTTGAGAGAGTA | + |
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Preference number: 5 (lower is better) Translates to: AWPPWASPTCLDKGI*FGNSPAKLSSVERV Trigger: TACTCTCTCAACACTAGAGAGCTTTGCTGGACTATTCCCAAATCAGATACCTTTATCAAGACAGGTTGGACTTGCCCAAGGAGGCCAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS CCA 90 bp | AAAGCTGATTGGTTCTTTTTGTGGATAAAGCAGGCTTCCTTCTACTaGCATTCCAGGAGTTTCTGGAGCTGTGCCTACAAAGCTGTCAAA | + |
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Preference number: 5 (lower is better) Translates to: KADWFFLWIKQASFY*HSRSFWSCAYKAVK Trigger: TTTGACAGCTTTGTAGGCACAGCTCCAGAAACTCCTGGAATGCCAGTAGAAGGAAGCCTGCTTTATCCACAAAAAGAACCAATCAGCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS-3UTR CAA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGGAGGAATCCAGGAGTaGAAGGCACCCTGGAACTGC | + |
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Preference number: 5 (lower is better) Translates to: TWVSHECLEDYHCNQVSLGGIQE*KAPWNC Trigger: GCAGTTCCAGGGTGCCTTCAACTCCTGGATTCCTCC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CAA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTATACCCCAGGTTCTGCTaGTGGTGGTGCGAATCCAAA | + |
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Preference number: 5 (lower is better) Translates to: TWVSHECLEDYHCNQVSLYPRFC*WWCESK Trigger: TTTGGATTCGCACCACCACAAGCAGAACCTGGGGTA...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CAA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTAGCTGATTGGTTCTTTTaGTGGATAAAGCAGGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: TWVSHECLEDYHCNQVSLADWFF*WIKQAS Trigger: GGAAGCCTGCTTTATCCACAAAAAGAACCAATCAGC...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CAA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTACTGCAGTGGCAAAAGTaGACCATTATTAAGATTCAG | + |
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Preference number: 5 (lower is better) Translates to: TWVSHECLEDYHCNQVSLLQWQK*TIIKIQ Trigger: CTGAATCTTAATAATGGTCAACTTTTGCCACTGCAG...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CAA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTACAAGTCCAACCTGTCTaGATAAAGGTATCTGATTTG | + |
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Preference number: 5 (lower is better) Translates to: TWVSHECLEDYHCNQVSLQVQPV*IKVSDL Trigger: CAAATCAGATACCTTTATCAAGACAGGTTGGACTTG...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS-3UTR CAA 90 bp | ACTTGGGTGTCACATGAATGTTTGGAAGATTATCATTGCAATCAAGTTTCACTATGGTGCGAATCCAAATaGATTATAGAAAGGTATCTG | + |
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Preference number: 5 (lower is better) Translates to: TWVSHECLEDYHCNQVSLWCESK*IIERYL Trigger: CAGATACCTTTCTATAATCAATTTGGATTCGCACCA...TAGTGAAACTTGATTGCAATGATAATCTTCCAAACATTCATGTGACACCCAAGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129757.9 |
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| CDS CCA 72 bp | ATAGGACATAGGGCTAGCACTCTGCTGGGTCTGAGGTaGTGTCTGCTGCTGAGAGAGGTCTGGCTGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: IGHRASTLLGLR*CLLLREVWLAS Trigger: GCTGGCCAGCCAGACCTCTCTCAGCAGCAGACACCACCTCAGACCCAGCAGAGTGCTAGCCCTATGTCCTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS TCA 72 bp | CAAATAGCTGCTGCCCTGTGTGCTGTGGTGAGGATGTaGCGGTCTGAGGCTGCTCCCAGGGCAGAAGCATGT | + |
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Preference number: 6 (lower is better) Translates to: QIAAALCAVVRM*RSEAAPRAEAC Trigger: ACATGCTTCTGCCCTGGGAGCAGCCTCAGACCGTCACATCCTCACCACAGCACACAGGGCAGCAGCTATTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS TCA 72 bp | AGTGTTGAGAGAGTAAACTGTGGGCGTCCTGAGACCTaGGCCTGCTGCTGCTGCAGAAACCCAGGGAAGGGA | + |
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Preference number: 6 (lower is better) Translates to: SVERVNCGRPET*ACCCCRNPGKG Trigger: TCCCTTCCCTGGGTTTCTGCAGCAGCAGCAGGCTCAGGTCTCAGGACGCCCACAGTTTACTCTCTCAACACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS GCA 72 bp | TCTGGAGCTGTGCCTACAAAGCTGTCAAAAGCTAAGTaGTGCTGCCCTCCTGGTACCCCAGGTTCTGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: SGAVPTKLSKAK*CCPPGTPGSAC Trigger: ACAAGCAGAACCTGGGGTACCAGGAGGGCAGCAGCACTTAGCTTTTGACAGCTTTGTAGGCACAGCTCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS CAA 90 bp | GGTCTGGCTGGCCAGCCTGGCCTCCTTGGGCAAGTCCAACCTGTCTaGATAAAGGTATCTGATTTGGGAATAGTCCAGCAAAGCTCTCTA | + |
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Preference number: 6 (lower is better) Translates to: GLAGQPGLLGQVQPV*IKVSDLGIVQQSSL Trigger: TAGAGAGCTTTGCTGGACTATTCCCAAATCAGATACCTTTATCAAGACAGGTTGGACTTGCCCAAGGAGGCCAGGCTGGCCAGCCAGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS CAA 72 bp | GGCCAGCCTGGCCTCCTTGGGCAAGTCCAACCTGTCTaGATAAAGGTATCTGATTTGGGAATAGTCCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: GQPGLLGQVQPV*IKVSDLGIVQQ Trigger: TTGCTGGACTATTCCCAAATCAGATACCTTTATCAAGACAGGTTGGACTTGCCCAAGGAGGCCAGGCTGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS CCA 72 bp | CTGCTGCCCTCCTGGTACCCCAGGTTCTGCTTGTGGTaGTGCGAATCCAAATTGATTATAGAAAGGTATCTG | + |
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Preference number: 6 (lower is better) Translates to: LLPSWYPRFCLW*CESKLIIERYL Trigger: CAGATACCTTTCTATAATCAATTTGGATTCGCACCACCACAAGCAGAACCTGGGGTACCAGGAGGGCAGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS CCA 72 bp | GTGCTGCTGCCCTCCTGGTACCCCAGGTTCTGCTTGTaGTGGTGCGAATCCAAATTGATTATAGAAAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: VLLPSWYPRFCL*WCESKLIIERY Trigger: ATACCTTTCTATAATCAATTTGGATTCGCACCACCACAAGCAGAACCTGGGGTACCAGGAGGGCAGCAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS CCA 72 bp | TGGTTCTTTTTGTGGATAAAGCAGGCTTCCTTCTACTaGCATTCCAGGAGTTTCTGGAGCTGTGCCTACAAA | + |
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Preference number: 6 (lower is better) Translates to: WFFLWIKQASFY*HSRSFWSCAYK Trigger: TTTGTAGGCACAGCTCCAGAAACTCCTGGAATGCCAGTAGAAGGAAGCCTGCTTTATCCACAAAAAGAACCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS TCA 72 bp | CCTTGGGCAAGTCCAACCTGTCTTGATAAAGGTATCTaGTTTGGGAATAGTCCAGCAAAGCTCTCTAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: PWASPTCLDKGI*FGNSPAKLSSV Trigger: AACACTAGAGAGCTTTGCTGGACTATTCCCAAATCAGATACCTTTATCAAGACAGGTTGGACTTGCCCAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS CAA 90 bp | CAGAAGCATGTAAACTGGATAGTACTGAAACATCTGTGTTTGATCTaGAGGTACTTTGACAGGTACCACATAGGACATAGGGCTAGCACT | + |
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Preference number: 6 (lower is better) Translates to: QKHVNWIVLKHLCLI*RYFDRYHIGHRAST Trigger: AGTGCTAGCCCTATGTCCTATGTGGTACCTGTCAAAGTACCTCAAGATCAAACACAGATGTTTCAGTACTATCCAGTTTACATGCTTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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| CDS CAA 90 bp | CATGAAAACTCCTGCATTATCATGCTTAAAGCTGATTGGTTCTTTTaGTGGATAAAGCAGGCTTCCTTCTACTGGCATTCCAGGAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: HENSCIIMLKADWFF*WIKQASFYWHSRSF Trigger: GAAACTCCTGGAATGCCAGTAGAAGGAAGCCTGCTTTATCCACAAAAAGAACCAATCAGCTTTAAGCATGATAATGCAGGAGTTTTCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113274.3 ENSMUST00000129757.9 |
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