Pregenerated sensors for OCM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029618Ensembl transcript IDs: ENSMUST00000031622.13
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGAAGAGCCACAAACCATTGCATTCCCTCAAGCAAGGAGCACGTTaGAGAAGAGCTTCAGGGGGACTTGGTAAATTAGTTCGGGGTAGG | + |
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Preference number: 1 (lower is better) Translates to: RKSHKPLHSLKQGAR*RRASGGLGKLVRGR Trigger: CCTACCCCGAACTAATTTACCAAGTCCCCCTGAAGCTCTTCTGCAACGTGCTCCTTGCTTGAGGGAATGCAATGGTTTGTGGCTCTTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| 3UTR CAA 90 bp | TCAGGACCTATCCACCACCACCAAAGAAGGAAGAGCCACAAACCATaGCATTCCCTCAAGCAAGGAGCACGTTGCAGAAGAGCTTCAGGG | + |
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Preference number: 2 (lower is better) Translates to: SGPIHHHQRRKSHKP*HSLKQGARCRRASG Trigger: CCCTGAAGCTCTTCTGCAACGTGCTCCTTGCTTGAGGGAATGCAATGGTTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGATAGGTCCTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| 3UTR-3UTR CCA 90 bp | TTACAGAAGTCATCAGGACCTATCCACCACCACCAAAGAAGGAAGAGCCACAAAGCTTTTGAATCCTTCTaGCAGAATGCCCCTTCCTCT | + |
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Preference number: 2 (lower is better) Translates to: LQKSSGPIHHHQRRKSHKAFESF*QNAPSS Trigger: AGAGGAAGGGGCATTCTGCCAGAAGGATTCAAAAGC...TTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGATAGGTCCTGATGACTTCTGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| 3UTR GCA 72 bp | TCCACCACCACCAAAGAAGGAAGAGCCACAAACCATTaGATTCCCTCAAGCAAGGAGCACGTTGCAGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: STTTKEGRATNH*IPSSKEHVAEE Trigger: CTCTTCTGCAACGTGCTCCTTGCTTGAGGGAATGCAATGGTTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| 3UTR GCA 72 bp | CACAAACCATTGCATTCCCTCAAGCAAGGAGCACGTTaGAGAAGAGCTTCAGGGGGACTTGGTAAATTAGTT | + |
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Preference number: 3 (lower is better) Translates to: HKPLHSLKQGAR*RRASGGLGKLV Trigger: AACTAATTTACCAAGTCCCCCTGAAGCTCTTCTGCAACGTGCTCCTTGCTTGAGGGAATGCAATGGTTTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| CDS-3UTR CCA 90 bp | GGACTTGGTAAATTAGTTCGGGGTAGGGTGGGGAGCATCCCAGTCCCAGGGCTTTGGTTCAAAGGTGTCTaGGTCTTGGCATTCCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: GLGKLVRGRVGSIPVPGLWFKGV*VLAFLQ Trigger: CTGCAGGAATGCCAAGACCCAGACACCTTTGAACCA...AAGCCCTGGGACTGGGATGCTCCCCACCCTACCCCGAACTAATTTACCAAGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| CDS-3UTR CCA 90 bp | GAAGTCATCAGGACCTATCCACCACCACCAAAGAAGGAAGAGCCACAAACCATTAAGGTGTCTGGGTCTTaGCATTCCTGCAGGGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: EVIRTYPPPPKKEEPQTIKVSGS*HSCRAA Trigger: AGCGGCCCTGCAGGAATGCCAAGACCCAGACACCTT...AATGGTTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGATAGGTCCTGATGACTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| 3UTR CAA 72 bp | ATCCACCACCACCAAAGAAGGAAGAGCCACAAACCATaGCATTCCCTCAAGCAAGGAGCACGTTGCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: IHHHQRRKSHKP*HSLKQGARCRR Trigger: TCTTCTGCAACGTGCTCCTTGCTTGAGGGAATGCAATGGTTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| CDS-3UTR CCA 90 bp | TCCACCACCACCAAAGAAGGAAGAGCCACAAACCATTGCATTCCCTCAAGCAAGGAGAGGCCCGATGTCTaGAAGAACTTTTGTGGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: STTTKEGRATNHCIPSSKERPDV*KNFCGS Trigger: TGAACCACAAAAGTTCTTCCAGACATCGGGCCTCTC...CTTGCTTGAGGGAATGCAATGGTTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| CDS-3UTR CCA 90 bp | AGTCATCAGGACCTATCCACCACCACCAAAGAAGGAAGAGCCACAAACCATTGCTCTCTAGCGTCGCTCTaGAACCTCTGTAGGAAATAC | + |
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Preference number: 4 (lower is better) Translates to: SHQDLSTTTKEGRATNHCSLASL*NLCRKY Trigger: GTATTTCCTACAGAGGTTCCAGAGCGACGCTAGAGA...GCAATGGTTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGATAGGTCCTGATGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| CDS-3UTR TCA 90 bp | TTTGAATCCTTCTGGCAGAATGCCCCTTCCTCTCTTTCTTCTGAAGACTTGGGCTCTGTAGGAAATACTTaGGCTCATCTTCATCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: FESFWQNAPSSLSSEDLGSVGNT*AHLHPG Trigger: ACCTGGATGAAGATGAGCTCAAGTATTTCCTACAGA...GCCCAAGTCTTCAGAAGAAAGAGAGGAAGGGGCATTCTGCCAGAAGGATTCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| CDS-3UTR CCA 90 bp | GCTTTTGAATCCTTCTGGCAGAATGCCCCTTCCTCTCTTTCTTCTGAAGACTTGGAATGCACCATTTCCTaGAATTCATCAGCCCCAATC | + |
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Preference number: 4 (lower is better) Translates to: AFESFWQNAPSSLSSEDLECTIS*NSSAPI Trigger: GATTGGGGCTGATGAATTCCAGGAAATGGTGCATTC...CAAGTCTTCAGAAGAAAGAGAGGAAGGGGCATTCTGCCAGAAGGATTCAAAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| CDS-3UTR CAA 90 bp | AGTCATCAGGACCTATCCACCACCACCAAAGAAGGAAGAGCCACAAACCATTGCTGGCTGGCAGACATCTaGGAGAGGCCCGATGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SHQDLSTTTKEGRATNHCWLADI*ERPDVW Trigger: CCAGACATCGGGCCTCTCCAAGATGTCTGCCAGCCA...GCAATGGTTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGATAGGTCCTGATGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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| CDS-3UTR CAA 90 bp | CCTATCCACCACCACCAAAGAAGGAAGAGCCACAAACCATTGCATTCCCTCAAGTATCCACTCTGGTCGTaGTCTATGAACTGGAAGATA | + |
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Preference number: 5 (lower is better) Translates to: PIHHHQRRKSHKPLHSLKYPLWS*SMNWKI Trigger: TATCTTCCAGTTCATAGACAACGACCAGAGTGGATA...CTTGAGGGAATGCAATGGTTTGTGGCTCTTCCTTCTTTGGTGGTGGTGGATAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031622.13 |
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