Pregenerated sensors for OCIAD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029153Ensembl transcript IDs: ENSMUST00000087195.9, ENSMUST00000200776.4, ENSMUST00000200830.4, ENSMUST00000201908.4, ENSMUST00000202012.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTaGGAATTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTGAGC | + |
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Preference number: 1 (lower is better) Translates to: ASDLITDGCEPPCGC*ELNSEPLEEQSVLS Trigger: GCTCAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR CCA 90 bp | AGTGCTGACCATGAGAATGGATCCATGGGCCAAGCAGGTCACCTATaGATAGATGATGGTCACTTTTATAGCTCCACCATTGTGATGAGC | + |
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Preference number: 1 (lower is better) Translates to: SADHENGSMGQAGHL*IDDGHFYSSTIVMS Trigger: GCTCATCACAATGGTGGAGCTATAAAAGTGACCATCATCTATCCATAGGTGACCTGCTTGGCCCATGGATCCATTCTCATGGTCAGCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR TCA 90 bp | TCTAGACCTCAGAATGGACGTCCAATACTAAAACACAACCTTTCCTaGATTTCTAGTTCCATAGACAATGAGTTTTCTATGGGTCTTGAC | + |
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Preference number: 1 (lower is better) Translates to: SRPQNGRPILKHNLS*ISSSIDNEFSMGLD Trigger: GTCAAGACCCATAGAAAACTCATTGTCTATGGAACTAGAAATTCAGGAAAGGTTGTGTTTTAGTATTGGACGTCCATTCTGAGGTCTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CCA 90 bp | GAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCAGGGTTTCTGCGAACTGGGGGAGGTaGGGGTGGGCGAGAAGACCC | + |
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Preference number: 2 (lower is better) Translates to: EPLEEQSVLSHLSSPRVSANWGR*GWARRP Trigger: GGGTCTTCTCGCCCACCCCCACCTCCCCCAGTTCGC...AGAAACCCTGGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CCA 90 bp | GACCATGAGAATGGATCCATGGGCCAAGCAGGTCACCTATGGATAGATGATGGTGCGAACTGGGGGAGGTaGGGGTGGGCGAGAAGACCC | + |
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Preference number: 2 (lower is better) Translates to: DHENGSMGQAGHLWIDDGANWGR*GWARRP Trigger: GGGTCTTCTCGCCCACCCCCACCTCCCCCAGTTCGC...ACCATCATCTATCCATAGGTGACCTGCTTGGCCCATGGATCCATTCTCATGGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CCA 90 bp | ACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGCGAACTGGGGGAGGTaGGGGTGGGCGAGAAGACCC | + |
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Preference number: 2 (lower is better) Translates to: THQKRASDLITDGCEPPCANWGR*GWARRP Trigger: GGGTCTTCTCGCCCACCCCCACCTCCCCCAGTTCGC...ACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CCA 90 bp | GAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCAGGGTTTCTATGAGAATGGATCCATaGGCCAAGCAGGTCACCTAT | + |
|
Preference number: 2 (lower is better) Translates to: EPLEEQSVLSHLSSPRVSMRMDP*AKQVTY Trigger: ATAGGTGACCTGCTTGGCCCATGGATCCATTCTCAT...AGAAACCCTGGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | GAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCAGGGTTTCTGTTTTCTATGGGTCTTaGCTTCCCAACCAACTTCCA | + |
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Preference number: 2 (lower is better) Translates to: EPLEEQSVLSHLSSPRVSVFYGS*LPNQLP Trigger: TGGAAGTTGGTTGGGAAGTCAAGACCCATAGAAAAC...AGAAACCCTGGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | ACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTAAGAGCAGTCAGTGCTaGGCCATCTCTCCAGCCCCA | + |
|
Preference number: 2 (lower is better) Translates to: THQKRASDLITDGCEPPCKSSQC*AISPAP Trigger: TGGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTT...ACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | AGCATTTTCCTGAGAGGCTGCAAAGATGCAAGGACAGCTTTCACACAGTGCTCAGCCACCAAGTCACATTaGCCACACTGTGGGTCACCT | + |
|
Preference number: 2 (lower is better) Translates to: SIFLRGCKDARTAFTQCSATKSH*PHCGSP Trigger: AGGTGACCCACAGTGTGGTCAATGTGACTTGGTGGC...TGAGCACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | AATTCAGTCCTACAGTGTTCCTTCCAGGAAGCTGTTGTCTGGGGGACCAAGTTAGCCACCAAGTCACATTaGCCACACTGTGGGTCACCT | + |
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Preference number: 2 (lower is better) Translates to: NSVLQCSFQEAVVWGTKLATKSH*PHCGSP Trigger: AGGTGACCCACAGTGTGGTCAATGTGACTTGGTGGC...TAACTTGGTCCCCCAGACAACAGCTTCCTGGAAGGAACACTGTAGGACTGAATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | ACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGCCACCAAGTCACATTaGCCACACTGTGGGTCACCT | + |
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Preference number: 2 (lower is better) Translates to: THQKRASDLITDGCEPPCATKSH*PHCGSP Trigger: AGGTGACCCACAGTGTGGTCAATGTGACTTGGTGGC...ACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | TTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCAGCATTTCAAAGGGGTaGGAGAATTACAGGTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: LNSEPLEEQSVLSHLSSPSISKG*ENYRFL Trigger: CAGAAACCTGTAATTCTCTCACCCCTTTGAAATGCT...GGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR CAA 90 bp | GATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATaGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTC | + |
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Preference number: 2 (lower is better) Translates to: DLITDGCEPPCGCWE*NSEPLEEQSVLSHL Trigger: GAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTGTAATGAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | ACACCACTGTATTGGCTGCCTCGGATCCCAGAGGTTCCCAGAGTTTCTCTTTTTGTGGTTGTTGGGAATTaGACTCAGAACCTCTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: TPLYWLPRIPEVPRVSLFVVVGN*TQNLWK Trigger: CTTCCAGAGGTTCTGAGTTCAATTCCCAACAACCAC...AAAAAGAGAAACTCTGGGAACCTCTGGGATCCGAGGCAGCCAATACAGTGGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR GCA 90 bp | TTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCCACTTTCACAGGAAATaGTTTCCAGTTACAGATCTC | + |
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Preference number: 2 (lower is better) Translates to: LNSEPLEEQSVLSHLSSPHFHRK*FPVTDL Trigger: GAGATCTGTAACTGGAAAGCATTTCCTGTGAAAGTG...GGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CCA 90 bp | ACACCACTGTATTGGCTGCCTCGGATCCCAGAGGTTCCCAGAGTTTCTCTTTTTCAGGAAGCTGTTGTCTaGGGGACCAAGTTAAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: TPLYWLPRIPEVPRVSLFQEAVV*GTKLRS Trigger: ACTTCTTAACTTGGTCCCCCAGACAACAGCTTCCTG...AAAAAGAGAAACTCTGGGAACCTCTGGGATCCGAGGCAGCCAATACAGTGGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | AACAGGGCATGTCATATAAAAATCAACGCAGGCAAATTCGTTCAGTGTTCACACAAGAGCAGTCAGTGCTaGGCCATCTCTCCAGCCCCA | + |
|
Preference number: 2 (lower is better) Translates to: NRACHIKINAGKFVQCSHKSSQC*AISPAP Trigger: TGGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTT...GTGTGAACACTGAACGAATTTGCCTGCGTTGATTTTTATATGACATGCCCTGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CCA 90 bp | ACACCACTGTATTGGCTGCCTCGGATCCCAGAGGTTCCCAGAGTTTCTCTTTTTCCACCATGTGGTTGTTaGGAATTGAACTCAGAACCT | + |
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Preference number: 2 (lower is better) Translates to: TPLYWLPRIPEVPRVSLFPPCGC*ELNSEP Trigger: AGGTTCTGAGTTCAATTCCCAACAACCACATGGTGG...AAAAAGAGAAACTCTGGGAACCTCTGGGATCCGAGGCAGCCAATACAGTGGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGCATTTTCCTGAGAGGCTGCAAAGATGCAAGGACAGCTTTCACACAGTGGTGACAGTTTCACGGTaGCACTTTCACAGGAAATGC | + |
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Preference number: 2 (lower is better) Translates to: TKHFPERLQRCKDSFHTVVTVSR*HFHRKC Trigger: GCATTTCCTGTGAAAGTGTCACCGTGAAACTGTCAC...CACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CCA 90 bp | ACAAAGCATTTTCCTGAGAGGCTGCAAAGATGCAAGGACAGCTTTCACACAGTGATGAGAATGGATCCATaGGCCAAGCAGGTCACCTAT | + |
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Preference number: 2 (lower is better) Translates to: TKHFPERLQRCKDSFHTVMRMDP*AKQVTY Trigger: ATAGGTGACCTGCTTGGCCCATGGATCCATTCTCAT...CACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | AACAGGGCATGTCATATAAAAATCAACGCAGGCAAATTCGTTCAGTGTTCACACGGCTTGCAGATGTGCTaGGTAAAAGCACGTGCACAC | + |
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Preference number: 2 (lower is better) Translates to: NRACHIKINAGKFVQCSHGLQMC*VKARAH Trigger: GTGTGCACGTGCTTTTACTCAGCACATCTGCAAGCC...GTGTGAACACTGAACGAATTTGCCTGCGTTGATTTTTATATGACATGCCCTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | ATGGGTCTTGACTTCCCAACCAACTTCCACATCACTCATTCCTGTTCTCTACCAAGCATTTCAAAGGGGTaGGAGAATTACAGGTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: MGLDFPTNFHITHSCSLPSISKG*ENYRFL Trigger: CAGAAACCTGTAATTCTCTCACCCCTTTGAAATGCT...TGGTAGAGAACAGGAATGAGTGATGTGGAAGTTGGTTGGGAAGTCAAGACCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 ENSMUST00000202012.2 |
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| 3UTR-3UTR CCA 90 bp | AATTCAGTCCTACAGTGTTCCTTCCAGGAAGCTGTTGTCTGGGGGACCAAGTTAACAATGAGTTTTCTATaGGTCTTGACTTCCCAACCA | + |
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Preference number: 2 (lower is better) Translates to: NSVLQCSFQEAVVWGTKLTMSFL*VLTSQP Trigger: TGGTTGGGAAGTCAAGACCCATAGAAAACTCATTGT...TAACTTGGTCCCCCAGACAACAGCTTCCTGGAAGGAACACTGTAGGACTGAATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | AGCATTTTCCTGAGAGGCTGCAAAGATGCAAGGACAGCTTTCACACAGTGCTCAAAACACAACCTTTCCTaGATTTCTAGTTCCATAGAC | + |
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Preference number: 2 (lower is better) Translates to: SIFLRGCKDARTAFTQCSKHNLS*ISSSID Trigger: GTCTATGGAACTAGAAATTCAGGAAAGGTTGTGTTT...TGAGCACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CCA 90 bp | ACAAAGCATTTTCCTGAGAGGCTGCAAAGATGCAAGGACAGCTTTCACACAGTGACAATGAGTTTTCTATaGGTCTTGACTTCCCAACCA | + |
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Preference number: 2 (lower is better) Translates to: TKHFPERLQRCKDSFHTVTMSFL*VLTSQP Trigger: TGGTTGGGAAGTCAAGACCCATAGAAAACTCATTGT...CACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR GCA 90 bp | AACAGGGCATGTCATATAAAAATCAACGCAGGCAAATTCGTTCAGTGTTCACACCCCTTTTTACCTCCATaGTTTAGGCTTGCAGATGTG | + |
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Preference number: 2 (lower is better) Translates to: NRACHIKINAGKFVQCSHPFLPP*FRLADV Trigger: CACATCTGCAAGCCTAAAGCATGGAGGTAAAAAGGG...GTGTGAACACTGAACGAATTTGCCTGCGTTGATTTTTATATGACATGCCCTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR TCA 90 bp | CTTAAATTAAGCAAAGGGTTCTCAAAAGGGAGGACCAAACTTCCCATGACTAGAAGCATTTCAAAGGGGTaGGAGAATTACAGGTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: LKLSKGFSKGRTKLPMTRSISKG*ENYRFL Trigger: CAGAAACCTGTAATTCTCTCACCCCTTTGAAATGCT...TCTAGTCATGGGAAGTTTGGTCCTCCCTTTTGAGAACCCTTTGCTTAATTTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR GCA 72 bp | TGCTTTAGGCTTGCAGATGTGCTGAGTAAAAGCACGTaGACACGCGCTCACACGCACACACACGCGCGCGCA | + |
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Preference number: 3 (lower is better) Translates to: CFRLADVLSKST*TRAHTHTHARA Trigger: TGCGCGCGCGTGTGTGTGCGTGTGAGCGCGTGTGCACGTGCTTTTACTCAGCACATCTGCAAGCCTAAAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CAA 90 bp | ACACCACTGTATTGGCTGCCTCGGATCCCAGAGGTTCCCAGAGTTTCTCTTTTTAGCCACCAAGTCACATaGACCACACTGTGGGTCACC | + |
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Preference number: 3 (lower is better) Translates to: TPLYWLPRIPEVPRVSLFSHQVT*TTLWVT Trigger: GGTGACCCACAGTGTGGTCAATGTGACTTGGTGGCT...AAAAAGAGAAACTCTGGGAACCTCTGGGATCCGAGGCAGCCAATACAGTGGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CAA 90 bp | AGCATTTTCCTGAGAGGCTGCAAAGATGCAAGGACAGCTTTCACACAGTGCTCAAGCCACCAAGTCACATaGACCACACTGTGGGTCACC | + |
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Preference number: 3 (lower is better) Translates to: SIFLRGCKDARTAFTQCSSHQVT*TTLWVT Trigger: GGTGACCCACAGTGTGGTCAATGTGACTTGGTGGCT...TGAGCACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR GCA 72 bp | CTGGAGGAGGAATCCAACTTACACCACTGTATTGGCTaGCTCGGATCCCAGAGGTTCCCAGAGTTTCTCTTT | + |
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Preference number: 3 (lower is better) Translates to: LEEESNLHHCIG*LGSQRFPEFLF Trigger: AAAGAGAAACTCTGGGAACCTCTGGGATCCGAGGCAGCCAATACAGTGGTGTAAGTTGGATTCCTCCTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR TCA 72 bp | CCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTaGGCCACCATGTGGTTGTTGGGAATTGAACTCAGA | + |
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Preference number: 3 (lower is better) Translates to: PEEGIRSHYRWL*ATMWLLGIELR Trigger: TCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR TCA 72 bp | GCAAAGGGTTCTCAAAAGGGAGGACCAAACTTCCCATaGCTAGACTTAGCTGGAGGAGGAATCCAACTTACA | + |
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Preference number: 3 (lower is better) Translates to: AKGSQKGGPNFP*LDLAGGGIQLT Trigger: TGTAAGTTGGATTCCTCCTCCAGCTAAGTCTAGTCATGGGAAGTTTGGTCCTCCCTTTTGAGAACCCTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR CCA 72 bp | CTCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTaGGAATTGAACTCAGAACCTCTGGAAGAGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LITDGCEPPCGC*ELNSEPLEEQS Trigger: TGACTGCTCTTCCAGAGGTTCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTGTAATGAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR GCA 72 bp | ATGGTGATGTGTAGACAAAGCATTTTCCTGAGAGGCTaGAAAGATGCAAGGACAGCTTTCACACAGTGCTCA | + |
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Preference number: 3 (lower is better) Translates to: MVMCRQSIFLRG*KDARTAFTQCS Trigger: TGAGCACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCTTTGTCTACACATCACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR CCA 72 bp | CATGAGAATGGATCCATGGGCCAAGCAGGTCACCTATaGATAGATGATGGTCACTTTTATAGCTCCACCATT | + |
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Preference number: 3 (lower is better) Translates to: HENGSMGQAGHL*IDDGHFYSSTI Trigger: AATGGTGGAGCTATAAAAGTGACCATCATCTATCCATAGGTGACCTGCTTGGCCCATGGATCCATTCTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| 3UTR-3UTR CAA 90 bp | CTTAAATTAAGCAAAGGGTTCTCAAAAGGGAGGACCAAACTTCCCATGACTAGATGTGGTTGTTGGGAATaGAACTCAGAACCTCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: LKLSKGFSKGRTKLPMTRCGCWE*NSEPLE Trigger: TTCCAGAGGTTCTGAGTTCAATTCCCAACAACCACA...TCTAGTCATGGGAAGTTTGGTCCTCCCTTTTGAGAACCCTTTGCTTAATTTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| CDS-3UTR CCA 90 bp | GAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCAGGGTTTCTTGGTGGACGAGTCCCTaGGTGACAAGCATGCTTATA | + |
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Preference number: 4 (lower is better) Translates to: EPLEEQSVLSHLSSPRVSWWTSP*VTSMLI Trigger: TATAAGCATGCTTGTCACCCAGGGACTCGTCCACCA...AGAAACCCTGGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| CDS-3UTR TCA 90 bp | GTGGGGGTGGGCGAGAAGACCCAGAAGCTATTATTCAAAGATCTCCCGGGAAGCCCAGCACCACGGAGCTaGTCTTCAAAGGAATGGAAT | + |
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Preference number: 4 (lower is better) Translates to: VGVGEKTQKLLFKDLPGSPAPRS*SSKEWN Trigger: ATTCCATTCCTTTGAAGATCAGCTCCGTGGTGCTGG...GCTTCCCGGGAGATCTTTGAATAATAGCTTCTGGGTCTTCTCGCCCACCCCCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000087195.9 ENSMUST00000200830.4 ENSMUST00000202012.2 |
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| CDS-3UTR TCA 90 bp | TTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCCCAGCACCACGGAGCTaGTCTTCAAAGGAATGGAAT | + |
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Preference number: 4 (lower is better) Translates to: LNSEPLEEQSVLSHLSSPPAPRS*SSKEWN Trigger: ATTCCATTCCTTTGAAGATCAGCTCCGTGGTGCTGG...GGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAA 53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000200830.4 |
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| CDS-3UTR CCA 90 bp | TTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCTGTGCAGTTTTGATTTaGGGCAAAACAACAGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LNSEPLEEQSVLSHLSSPCAVLI*GKTTGS Trigger: AGAGCCTGTTGTTTTGCCCCAAATCAAAACTGCACA...GGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| CDS-3UTR CCA 90 bp | ACCCAGAAGCTATTATTCAAAGATCTCCCGGGAAGCTCTAAGCAAGGCAGGGTGTGGTGGACGAGTCCCTaGGTGACAAGCATGCTTATA | + |
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Preference number: 4 (lower is better) Translates to: TQKLLFKDLPGSSKQGRVWWTSP*VTSMLI Trigger: TATAAGCATGCTTGTCACCCAGGGACTCGTCCACCA...CACCCTGCCTTGCTTAGAGCTTCCCGGGAGATCTTTGAATAATAGCTTCTGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATaGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWE*NSEPLEEQSVL Trigger: CAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| CDS-3UTR TCA 90 bp | TTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCCAGAAACTCTCTTCTTaGCACTCTCTGATAATCTTG | + |
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Preference number: 4 (lower is better) Translates to: LNSEPLEEQSVLSHLSSPQKLSS*HSLIIL Trigger: CAAGATTATCAGAGAGTGTCAAGAAGAGAGTTTCTG...GGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| CDS-3UTR TCA 90 bp | TTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTGAGCCATCTCTCCAGCCCCTGCAACTTTAGGCAATaGTCCAAATCTTGGATTAGC | + |
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Preference number: 4 (lower is better) Translates to: LNSEPLEEQSVLSHLSSPCNFRQ*SKSWIS Trigger: GCTAATCCAAGATTTGGATCATTGCCTAAAGTTGCA...GGGGCTGGAGAGATGGCTCAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 |
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| CDS-3UTR GCA 90 bp | ATGGGTCTTGACTTCCCAACCAACTTCCACATCACTCATTCCTGTTCTCTACCAAGGCAGTGCCTGTTATaGTCAGGACCAAAGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: MGLDFPTNFHITHSCSLPRQCLL*SGPKPA Trigger: TGCTGGCTTTGGTCCTGAGCATAACAGGCACTGCCT...TGGTAGAGAACAGGAATGAGTGATGTGGAAGTTGGTTGGGAAGTCAAGACCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087195.9 ENSMUST00000200830.4 ENSMUST00000202012.2 |
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| CDS-3UTR TCA 90 bp | ACCCAGAAGCTATTATTCAAAGATCTCCCGGGAAGCTCTAAGCAAGGCAGGGTGCAGAAACTCTCTTCTTaGCACTCTCTGATAATCTTG | + |
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Preference number: 4 (lower is better) Translates to: TQKLLFKDLPGSSKQGRVQKLSS*HSLIIL Trigger: CAAGATTATCAGAGAGTGTCAAGAAGAGAGTTTCTG...CACCCTGCCTTGCTTAGAGCTTCCCGGGAGATCTTTGAATAATAGCTTCTGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| CDS-3UTR GCA 90 bp | TTTAAATGTGTACAAAGTCAGAGGTTTAAAAACGGTTGGAAACCACAGACTCAGACAACAGGCTCTGCTTaGTCAGTGGCGGCAAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: FKCVQSQRFKNGWKPQTQTTGSA*SVAASG Trigger: CCCACTTGCCGCCACTGAGCAAGCAGAGCCTGTTGT...CTGAGTCTGTGGTTTCCAACCGTTTTTAAACCTCTGACTTTGTACACATTTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| CDS-3UTR GCA 90 bp | AGCAAGCATTTCAAAGGGGTGAGAGAATTACAGGTTTCTGTTTCAATAGAAGTAACAACAGGCTCTGCTTaGTCAGTGGCGGCAAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: SKHFKGVRELQVSVSIEVTTGSA*SVAASG Trigger: CCCACTTGCCGCCACTGAGCAAGCAGAGCCTGTTGT...TACTTCTATTGAAACAGAAACCTGTAATTCTCTCACCCCTTTGAAATGCTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| CDS-3UTR TCA 90 bp | CTTCTACAGCAAGCATTTCAAAGGGGTGAGAGAATTACAGGTTTCTGTTTCAATCCAGCACCACGGAGCTaGTCTTCAAAGGAATGGAAT | + |
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Preference number: 4 (lower is better) Translates to: LLQQAFQRGERITGFCFNPAPRS*SSKEWN Trigger: ATTCCATTCCTTTGAAGATCAGCTCCGTGGTGCTGG...ATTGAAACAGAAACCTGTAATTCTCTCACCCCTTTGAAATGCTTGCTGTAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087195.9 ENSMUST00000200830.4 ENSMUST00000202012.2 |
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| CDS-3UTR GCA 90 bp | AGCAAGCATTTCAAAGGGGTGAGAGAATTACAGGTTTCTGTTTCAATAGAAGTAAGGCAGTGCCTGTTATaGTCAGGACCAAAGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SKHFKGVRELQVSVSIEVRQCLL*SGPKPA Trigger: TGCTGGCTTTGGTCCTGAGCATAACAGGCACTGCCT...TACTTCTATTGAAACAGAAACCTGTAATTCTCTCACCCCTTTGAAATGCTTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087195.9 ENSMUST00000200830.4 ENSMUST00000202012.2 |
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| CDS-3UTR TCA 90 bp | TTTCTATGGGTCTTGACTTCCCAACCAACTTCCACATCACTCATTCCTGTTCTCTGCAACTTTAGGCAATaGTCCAAATCTTGGATTAGC | + |
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Preference number: 4 (lower is better) Translates to: FLWVLTSQPTSTSLIPVLCNFRQ*SKSWIS Trigger: GCTAATCCAAGATTTGGATCATTGCCTAAAGTTGCA...GAGAACAGGAATGAGTGATGTGGAAGTTGGTTGGGAAGTCAAGACCCATAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 ENSMUST00000202012.2 |
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| CDS-3UTR CCA 90 bp | CTTAAATTAAGCAAAGGGTTCTCAAAAGGGAGGACCAAACTTCCCATGACTAGATGTGCAGTTTTGATTTaGGGCAAAACAACAGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LKLSKGFSKGRTKLPMTRCAVLI*GKTTGS Trigger: AGAGCCTGTTGTTTTGCCCCAAATCAAAACTGCACA...TCTAGTCATGGGAAGTTTGGTCCTCCCTTTTGAGAACCCTTTGCTTAATTTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| CDS-3UTR TCA 90 bp | TTTAAATGTGTACAAAGTCAGAGGTTTAAAAACGGTTGGAAACCACAGACTCAGTGCAACTTTAGGCAATaGTCCAAATCTTGGATTAGC | + |
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Preference number: 4 (lower is better) Translates to: FKCVQSQRFKNGWKPQTQCNFRQ*SKSWIS Trigger: GCTAATCCAAGATTTGGATCATTGCCTAAAGTTGCA...CTGAGTCTGTGGTTTCCAACCGTTTTTAAACCTCTGACTTTGTACACATTTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000087195.9 ENSMUST00000200776.4 ENSMUST00000200830.4 ENSMUST00000201908.4 ENSMUST00000202012.2 |
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| CDS-3UTR CAA 90 bp | AGCATTTTCCTGAGAGGCTGCAAAGATGCAAGGACAGCTTTCACACAGTGCTCACCAGAAACTCTCTTCTaGACACTCTCTGATAATCTT | + |
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Preference number: 5 (lower is better) Translates to: SIFLRGCKDARTAFTQCSPETLF*TLSDNL Trigger: AAGATTATCAGAGAGTGTCAAGAAGAGAGTTTCTGG...TGAGCACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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| CDS-3UTR CAA 90 bp | ACAAAGCATTTTCCTGAGAGGCTGCAAAGATGCAAGGACAGCTTTCACACAGTGCCAGAAACTCTCTTCTaGACACTCTCTGATAATCTT | + |
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Preference number: 5 (lower is better) Translates to: TKHFPERLQRCKDSFHTVPETLF*TLSDNL Trigger: AAGATTATCAGAGAGTGTCAAGAAGAGAGTTTCTGG...CACTGTGTGAAAGCTGTCCTTGCATCTTTGCAGCCTCTCAGGAAAATGCTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087195.9 ENSMUST00000201908.4 |
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