Pregenerated sensors for OBP1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067679Ensembl transcript IDs: ENSMUST00000088198.4
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTAGGAAAGGTGAATTAATGGTACTGATTCCATaGTTAAGAGGTTATGATGTA | + |
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Preference number: 2 (lower is better) Translates to: VSSLHRRRKMYSVRKGELMVLIP*LRGYDV Trigger: TACATCATAACCTCTTAACCATGGAATCAGTACCAT...TAATTCACCTTTCCTAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR GCA 90 bp | TCTTATGCTGTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTAGGAAACAGTCCAAATACCAATaGCAGCAGCAGAAACTTCAC | + |
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Preference number: 4 (lower is better) Translates to: SYAVSSLHRRRKMYSVRKQSKYQ*QQQKLH Trigger: GTGAAGTTTCTGCTGCTGGCATTGGTATTTGGACTG...TTTCCTAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATACAGCATAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR GCA 90 bp | GTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTAGGAAAGGTGAATTAGTCTTGCCATCTTCTTaGTTATACCCAGTGACTGTG | + |
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Preference number: 4 (lower is better) Translates to: VSSLHRRRKMYSVRKGELVLPSS*LYPVTV Trigger: CACAGTCACTGGGTATAAGCAAGAAGATGGCAAGAC...TAATTCACCTTTCCTAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR CCA 90 bp | TATGCTGTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTAGGAAAGGTATTTTGTTTTCCGGCTaGCTCTGTCCACATTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: YAVSSLHRRRKMYSVRKGILFSG*LCPHSH Trigger: ATGAGAATGTGGACAGAGCCAGCCGGAAAACAAAAT...ACCTTTCCTAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATACAGCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR TCA 90 bp | TCTTATGCTGTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTAGGAAAAGTGACTGTGGTCAATaGGCATTGTCCATTTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: SYAVSSLHRRRKMYSVRKSDCGQ*ALSILL Trigger: AAGCAAAATGGACAATGCTCATTGACCACAGTCACT...TTTCCTAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATACAGCATAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR TCA 90 bp | GGAATTTCTTATGCTGTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTGCTGGAATGCCTTTTTaGGTAGCTAACTCAGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: GISYAVSSLHRRRKMYSVAGMPF*VANSVS Trigger: ACTTACTGAGTTAGCTACTCAAAAAGGCATTCCAGC...AACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATACAGCATAAGAAATTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR CCA 90 bp | TCTTATGCTGTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTAGGAAATCTAAGGTTTCCAGCTaGAATGCCTTTTTGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: SYAVSSLHRRRKMYSVRKSKVSS*NAFLSS Trigger: GCTACTCAAAAAGGCATTCCAGCTGGAAACCTTAGA...TTTCCTAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATACAGCATAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR TCA 90 bp | GTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTAGGAAAGGTGAATTACAATATTATCAGCCATaGTGGCAGTGGTTTTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: VSSLHRRRKMYSVRKGELQYYQP*WQWFSI Trigger: AATGGAAAACCACTGCCATCATGGCTGATAATATTG...TAATTCACCTTTCCTAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR TCA 90 bp | GAATTTCTTATGCTGTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTACTTTCCTTTTGCTCATaGGTTAGAGCTTCACCCTTT | + |
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Preference number: 4 (lower is better) Translates to: EFLMLYHHCTGEGKCILLLSFCS*VRASPF Trigger: AAAGGGTGAAGCTCTAACTCATGAGCAAAAGGAAAG...TAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATACAGCATAAGAAATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS TCA 90 bp | GCTCCAGGGGACCACTCGTCTCTATCTTGTCAATATTATCAGCCATaGTGGCAGTGGTTTTCCATTGTCCTTGTAACTCAGGATGATCAT | + |
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Preference number: 5 (lower is better) Translates to: APGDHSSLSCQYYQP*WQWFSIVLVTQDDH Trigger: ATGATCATCCTGAGTTACAAGGACAATGGAAAACCACTGCCATCATGGCTGATAATATTGACAAGATAGAGACGAGTGGTCCCCTGGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR CAA 90 bp | AGGCATGTTAGGAATTTCTTATGCTGTATCATCACTGCACAGGAGAAGGAAAATCCACTCGTCTCTATCTaGTCAATATTATCAGCCATG | + |
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Preference number: 5 (lower is better) Translates to: RHVRNFLCCIITAQEKENPLVSI*SILSAM Trigger: CATGGCTGATAATATTGACAAGATAGAGACGAGTGG...ATTTTCCTTCTCCTGTGCAGTGATGATACAGCATAAGAAATTCCTAACATGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS-3UTR CAA 90 bp | TATGCTGTATCATCACTGCACAGGAGAAGGAAAATGTATTCTGTTAGGAAAGGTTGTGACTTTCATTTTTaGACATCCCTCATCACAAGT | + |
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Preference number: 5 (lower is better) Translates to: YAVSSLHRRRKMYSVRKGCDFHF*TSLITS Trigger: ACTTGTGATGAGGGATGTCAAAAAATGAAAGTCACA...ACCTTTCCTAACAGAATACATTTTCCTTCTCCTGTGCAGTGATGATACAGCATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS TCA 72 bp | GACCACTCGTCTCTATCTTGTCAATATTATCAGCCATaGTGGCAGTGGTTTTCCATTGTCCTTGTAACTCAG | + |
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Preference number: 6 (lower is better) Translates to: DHSSLSCQYYQP*WQWFSIVLVTQ Trigger: CTGAGTTACAAGGACAATGGAAAACCACTGCCATCATGGCTGATAATATTGACAAGATAGAGACGAGTGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS TCA 72 bp | GCCATCTTCTTGCTTATACCCAGTGACTGTGGTCAATaGGCATTGTCCATTTTGCTTGACATAAAATGTGAC | + |
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Preference number: 6 (lower is better) Translates to: AIFLLIPSDCGQ*ALSILLDIKCD Trigger: GTCACATTTTATGTCAAGCAAAATGGACAATGCTCATTGACCACAGTCACTGGGTATAAGCAAGAAGATGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS CAA 90 bp | GCTCATGAGTTAGAGCTTCACCCTTTCCAAGAATATACAACAATTTaGTTTTCCGGCTGGCTCTGTCCACATTCTCATCATAAAAGACTA | + |
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Preference number: 6 (lower is better) Translates to: AHELELHPFQEYTTI*FSGWLCPHSHHKRL Trigger: TAGTCTTTTATGATGAGAATGTGGACAGAGCCAGCCGGAAAACAAAATTGTTGTATATTCTTGGAAAGGGTGAAGCTCTAACTCATGAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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| CDS CAA 72 bp | TTAGAGCTTCACCCTTTCCAAGAATATACAACAATTTaGTTTTCCGGCTGGCTCTGTCCACATTCTCATCAT | + |
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Preference number: 6 (lower is better) Translates to: LELHPFQEYTTI*FSGWLCPHSHH Trigger: ATGATGAGAATGTGGACAGAGCCAGCCGGAAAACAAAATTGTTGTATATTCTTGGAAAGGGTGAAGCTCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088198.4 |
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