Pregenerated sensors for OBP1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067684Ensembl transcript IDs: ENSMUST00000088201.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATTTTGGTATGTAATACCCTGACTTCACAAGGGAGGGAAAGTTGTTTTGAAAGAAAGGTCAAGACCACATaGTCCATAATTCTGATCCTG | + |
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Preference number: 2 (lower is better) Translates to: ILVCNTLTSQGRESCFERKVKTT*SIILIL Trigger: CAGGATCAGAATTATGGATCATGTGGTCTTGACCTT...TCTTTCAAAACAACTTTCCCTCCCTTGTGAAGTCAGGGTATTACATACCAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS-3UTR GCA 90 bp | ATTTTGGTATGTAATACCCTGACTTCACAAGGGAGGGAAAGTTGTTTTGAAAGATTCCATCGCAGCATGTaGCAGTCCAAATGTCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: ILVCNTLTSQGRESCFERFHRSM*QSKCQS Trigger: GCTTTGACATTTGGACTGGCACATGCTGCGATGGAA...TCTTTCAAAACAACTTTCCCTCCCTTGTGAAGTCAGGGTATTACATACCAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS-3UTR CCA 90 bp | ATTTTGGTATGTAATACCCTGACTTCACAAGGGAGGGAAAGTTGTTTTGAAAGAAGCAACAGTTTTCCATaGTCCTTCCATCGCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: ILVCNTLTSQGRESCFERSNSFP*SFHRSM Trigger: CATGCTGCGATGGAAGGACCATGGAAAACTGTTGCT...TCTTTCAAAACAACTTTCCCTCCCTTGTGAAGTCAGGGTATTACATACCAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS-3UTR TCA 90 bp | ATTTTGGTATGTAATACCCTGACTTCACAAGGGAGGGAAAGTTGTTTTGAAAGACTTGCAAATACCCAGTaGTTGTGGTCAATGAGCACT | + |
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Preference number: 4 (lower is better) Translates to: ILVCNTLTSQGRESCFERLANTQ*LWSMST Trigger: AGTGCTCATTGACCACAATCACTGGGTATTTGCAAG...TCTTTCAAAACAACTTTCCCTCCCTTGTGAAGTCAGGGTATTACATACCAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS CCA 90 bp | CTCTATCTTGTCTACTCTATCAGCAGCAATAGCAACAGTTTTCCATaGTCCTTCCATCGCAGCATGTGCCAGTCCAAATGTCAAAGCAAG | + |
|
Preference number: 5 (lower is better) Translates to: LYLVYSISSNSNSFP*SFHRSMCQSKCQSK Trigger: CTTGCTTTGACATTTGGACTGGCACATGCTGCGATGGAAGGACCATGGAAAACTGTTGCTATTGCTGCTGATAGAGTAGACAAGATAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS-3UTR CAA 90 bp | ATTTTGGTATGTAATACCCTGACTTCACAAGGGAGGGAAAGTTGTTTTGAAAGACCACCTCTCTCTATCTaGTCTACTCTATCAGCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: ILVCNTLTSQGRESCFERPPLSI*STLSAA Trigger: TGCTGCTGATAGAGTAGACAAGATAGAGAGAGGTGG...TCTTTCAAAACAACTTTCCCTCCCTTGTGAAGTCAGGGTATTACATACCAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS-3UTR CAA 90 bp | ATTTTGGTATGTAATACCCTGACTTCACAAGGGAGGGAAAGTTGTTTTGAAAGAGGTCTTGCCATCTTCTaGCAAATACCCAGTGATTGT | + |
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Preference number: 5 (lower is better) Translates to: ILVCNTLTSQGRESCFERGLAIF*QIPSDC Trigger: ACAATCACTGGGTATTTGCAAGAAGATGGCAAGACC...TCTTTCAAAACAACTTTCCCTCCCTTGTGAAGTCAGGGTATTACATACCAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS TCA 90 bp | GTAGGTCTTGCCATCTTCTTGCAAATACCCAGTGATTGTGGTCAATaGGCACTGTCCATTTTCATTGACATAAAATGTGACTTTCATTTC | + |
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Preference number: 5 (lower is better) Translates to: VGLAIFLQIPSDCGQ*ALSIFIDIKCDFHF Trigger: GAAATGAAAGTCACATTTTATGTCAATGAAAATGGACAGTGCTCATTGACCACAATCACTGGGTATTTGCAAGAAGATGGCAAGACCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS-3UTR CAA 90 bp | ATTTTGGTATGTAATACCCTGACTTCACAAGGGAGGGAAAGTTGTTTTGAAAGAGTGACTTTCATTTCCTaGCATTCCTTTTCACAGGTA | + |
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Preference number: 5 (lower is better) Translates to: ILVCNTLTSQGRESCFERVTFIS*HSFSQV Trigger: TACCTGTGAAAAGGAATGCAAGGAAATGAAAGTCAC...TCTTTCAAAACAACTTTCCCTCCCTTGTGAAGTCAGGGTATTACATACCAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS CCA 72 bp | GTCTACTCTATCAGCAGCAATAGCAACAGTTTTCCATaGTCCTTCCATCGCAGCATGTGCCAGTCCAAATGT | + |
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Preference number: 6 (lower is better) Translates to: VYSISSNSNSFP*SFHRSMCQSKC Trigger: ACATTTGGACTGGCACATGCTGCGATGGAAGGACCATGGAAAACTGTTGCTATTGCTGCTGATAGAGTAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS GCA 72 bp | AGCAACAGTTTTCCATGGTCCTTCCATCGCAGCATGTaGCAGTCCAAATGTCAAAGCAAGCAGCAGAAATTT | + |
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Preference number: 6 (lower is better) Translates to: SNSFPWSFHRSM*QSKCQSKQQKF Trigger: AAATTTCTGCTGCTTGCTTTGACATTTGGACTGGCACATGCTGCGATGGAAGGACCATGGAAAACTGTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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| CDS TCA 72 bp | GCCATCTTCTTGCAAATACCCAGTGATTGTGGTCAATaGGCACTGTCCATTTTCATTGACATAAAATGTGAC | + |
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Preference number: 6 (lower is better) Translates to: AIFLQIPSDCGQ*ALSIFIDIKCD Trigger: GTCACATTTTATGTCAATGAAAATGGACAGTGCTCATTGACCACAATCACTGGGTATTTGCAAGAAGATGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088201.2 |
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