Pregenerated sensors for OBOX5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074366Ensembl transcript IDs: ENSMUST00000098802.10, ENSMUST00000173053.2, ENSMUST00000173455.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCCAACTCCAAAGACACTTGCATACATGCATTCTTGCCTTTGCATaGATAAATATTAGAGGAAGATGTCTGACAGAATGGGTTGGATGT | + |
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Preference number: 1 (lower is better) Translates to: LQLQRHLHTCILAFA*INIRGRCLTEWVGC Trigger: ACATCCAACCCATTCTGTCAGACATCTTCCTCTAATATTTATGCATGCAAAGGCAAGAATGCATGTATGCAAGTGTCTTTGGAGTTGGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| 3UTR-3UTR CCA 90 bp | CACTCTTTTATGACTCCAACTCCAAAGACACTTGCATACATGCATTCTTGCCTTAGAATGGGTTGGATGTaGAACTCTGGGTCAGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: HSFMTPTPKTLAYMHSCLRMGWM*NSGSGR Trigger: TCTCCCTGACCCAGAGTTCCACATCCAACCCATTCT...AAGGCAAGAATGCATGTATGCAAGTGTCTTTGGAGTTGGAGTCATAAAAGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| 3UTR-3UTR TCA 90 bp | CAGCCACCCCAAATATATACTAAACAAAGTATCATTTTCTACCAATGGACTCTGGACTCATCAAAGACCTaGAAGGTGTCAGCTGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: QPPQIYTKQSIIFYQWTLDSSKT*KVSAGV Trigger: CACCCCAGCTGACACCTTTCAGGTCTTTGATGAGTC...CAGAGTCCATTGGTAGAAAATGATACTTTGTTTAGTATATATTTGGGGTGGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| 3UTR-3UTR TCA 90 bp | CAGCCACCCCAAATATATACTAAACAAAGTATCATTTTCTACCAATGGACTCTGTTAGAGGAAGATGTCTaGCAGAATGGGTTGGATGTG | + |
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Preference number: 2 (lower is better) Translates to: QPPQIYTKQSIIFYQWTLLEEDV*QNGLDV Trigger: CACATCCAACCCATTCTGTCAGACATCTTCCTCTAA...CAGAGTCCATTGGTAGAAAATGATACTTTGTTTAGTATATATTTGGGGTGGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| 3UTR CCA 72 bp | AGGCCTGGACTCATCAAAGACCTGAAAGGTGTCAGCTaGGGTGGAGGGGTTTCTCAGAGTAAGCCAGTCATC | + |
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Preference number: 3 (lower is better) Translates to: RPGLIKDLKGVS*GGGVSQSKPVI Trigger: GATGACTGGCTTACTCTGAGAAACCCCTCCACCCCAGCTGACACCTTTCAGGTCTTTGATGAGTCCAGGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| 3UTR GCA 72 bp | CTCCAAATACTGAGAATAAAGGTGTGTATAACACACTaGTCCATGGCTGTAAGGCCTGGACTCATCAAAGAC | + |
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Preference number: 3 (lower is better) Translates to: LQILRIKVCITH*SMAVRPGLIKD Trigger: GTCTTTGATGAGTCCAGGCCTTACAGCCATGGAGCAGTGTGTTATACACACCTTTATTCTCAGTATTTGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| 3UTR TCA 72 bp | CTTGAGTTAGACTTGATAGTGGGTCCCTATGTTGCATaGATACACAGCCACCCCAAATATATACTAAACAAA | + |
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Preference number: 3 (lower is better) Translates to: LELDLIVGPYVA*IHSHPKYILNK Trigger: TTTGTTTAGTATATATTTGGGGTGGCTGTGTATTCATGCAACATAGGGACCCACTATCAAGTCTAACTCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| 3UTR GCA 72 bp | CAAAGACACTTGCATACATGCATTCTTGCCTTTGCATaGATAAATATTAGAGGAAGATGTCTGACAGAATGG | + |
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Preference number: 3 (lower is better) Translates to: QRHLHTCILAFA*INIRGRCLTEW Trigger: CCATTCTGTCAGACATCTTCCTCTAATATTTATGCATGCAAAGGCAAGAATGCATGTATGCAAGTGTCTTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| 3UTR TCA 72 bp | TTTTTCTATTATATGATTGCATGTTCTACATGTATATaGGGGTTCCTGTTGCATGTAGTGACCTTTGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: FFYYMIACSTCI*GFLLHVVTFEA Trigger: TGCTTCAAAGGTCACTACATGCAACAGGAACCCTCATATACATGTAGAACATGCAATCATATAATAGAAAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CCA 90 bp | ATCAAAGACCTGAAAGGTGTCAGCTGGGGTGGAGGGGTTTCTCAGAGTAAGCCATACAGGGAAGATTCCTaGCTGCAGTTGAATTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: IKDLKGVSWGGGVSQSKPYREDS*LQLNLG Trigger: GCCCAAATTCAACTGCAGCCAGGAATCTTCCCTGTA...TGGCTTACTCTGAGAAACCCCTCCACCCCAGCTGACACCTTTCAGGTCTTTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CCA 90 bp | CAGCCACCCCAAATATATACTAAACAAAGTATCATTTTCTACCAATGGACTCTGGCATCCTCTGGGGCTTaGGCAGCATATGCCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: QPPQIYTKQSIIFYQWTLASSGA*AAYASL Trigger: CAGGCTGGCATATGCTGCCCAAGCCCCAGAGGATGC...CAGAGTCCATTGGTAGAAAATGATACTTTGTTTAGTATATATTTGGGGTGGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CCA 90 bp | CTGTTGCATGTAGTGACCTTTGAAGCAAGGAGAGGGCTTAGGAACTCATATAACATATGCCAGCCTGACTaGAGCTTCAGCTACTGCTAT | + |
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Preference number: 4 (lower is better) Translates to: LLHVVTFEARRGLRNSYNICQPD*SFSYCY Trigger: ATAGCAGTAGCTGAAGCTCCAGTCAGGCTGGCATAT...GTTATATGAGTTCCTAAGCCCTCTCCTTGCTTCAAAGGTCACTACATGCAACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR GCA 90 bp | AATACTGAGAATAAAGGTGTGTATAACACACTGCTCCATGGCTGTAAGGCCTGGTGGAGCTTCAGCTACTaGTATGTCAGTCTGATATTC | + |
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Preference number: 4 (lower is better) Translates to: NTENKGVYNTLLHGCKAWWSFSY*YVSLIF Trigger: GAATATCAGACTGACATAGCAGTAGCTGAAGCTCCA...CCAGGCCTTACAGCCATGGAGCAGTGTGTTATACACACCTTTATTCTCAGTATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR TCA 90 bp | ATAGTGTCACTCCAGGAGAGACTACACTCTTTTATGACTCCAACTCCAAAGACAATATTTGAAGCCACTTaGAGTTTTGGATGCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: IVSLQERLHSFMTPTPKTIFEAT*SFGCKE Trigger: CTCCTTGCATCCAAAACTTCAAGTGGCTTCAAATAT...TGTCTTTGGAGTTGGAGTCATAAAAGAGTGTAGTCTCTCCTGGAGTGACACTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR TCA 90 bp | CACAGCCACCCCAAATATATACTAAACAAAGTATCATTTTCTACCAATGGACTCATTCCTGGCTGCAGTTaGATTTGGGCATGGAATCCT | + |
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Preference number: 4 (lower is better) Translates to: HSHPKYILNKVSFSTNGLIPGCS*IWAWNP Trigger: AGGATTCCATGCCCAAATTCAACTGCAGCCAGGAAT...GAGTCCATTGGTAGAAAATGATACTTTGTTTAGTATATATTTGGGGTGGCTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR GCA 90 bp | CAGGAGAGACTACACTCTTTTATGACTCCAACTCCAAAGACACTTGCATACATGCTTTGGTGTACACAGTaGGTTCTTTTCGAAACTTTC | + |
|
Preference number: 4 (lower is better) Translates to: QERLHSFMTPTPKTLAYMLWCTQ*VLFETF Trigger: GAAAGTTTCGAAAAGAACGCACTGTGTACACCAAAG...CATGTATGCAAGTGTCTTTGGAGTTGGAGTCATAAAAGAGTGTAGTCTCTCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CCA 90 bp | CACTCTTTTATGACTCCAACTCCAAAGACACTTGCATACATGCATTCTTGCCTTGCTTGTTTAATATTCTaGAGGTTCATCCGCCTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: HSFMTPTPKTLAYMHSCLACLIF*RFIRLY Trigger: GTACAGGCGGATGAACCTCCAGAATATTAAACAAGC...AAGGCAAGAATGCATGTATGCAAGTGTCTTTGGAGTTGGAGTCATAAAAGAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR TCA 90 bp | CTTGCCTTTGCATGCATAAATATTAGAGGAAGATGTCTGACAGAATGGGTTGGATTTAGAGATTCCATTTaGCTCTGGCAGTGCTTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LAFACINIRGRCLTEWVGFRDSI*LWQCLF Trigger: AAACAAGCACTGCCAGAGTCAAATGGAATCTCTAAA...TCCAACCCATTCTGTCAGACATCTTCCTCTAATATTTATGCATGCAAAGGCAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR TCA 90 bp | CACTCTTTTATGACTCCAACTCCAAAGACACTTGCATACATGCATTCTTGCCTTTTCTATGGGTATATTTaGAGCCACTTGAAGTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: HSFMTPTPKTLAYMHSCLFYGYI*SHLKFW Trigger: CCAAAACTTCAAGTGGCTTCAAATATACCCATAGAA...AAGGCAAGAATGCATGTATGCAAGTGTCTTTGGAGTTGGAGTCATAAAAGAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR TCA 90 bp | CACAGCCACCCCAAATATATACTAAACAAAGTATCATTTTCTACCAATGGACTCCTTTGTAACACCAACTaGTACTGCCAGCTCCATAAT | + |
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Preference number: 4 (lower is better) Translates to: HSHPKYILNKVSFSTNGLLCNTN*YCQLHN Trigger: ATTATGGAGCTGGCAGTATCAGTTGGTGTTACAAAG...GAGTCCATTGGTAGAAAATGATACTTTGTTTAGTATATATTTGGGGTGGCTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CCA 90 bp | TTTGCATGCATAAATATTAGAGGAAGATGTCTGACAGAATGGGTTGGATGTGGATTCTCGTTTGGGTACTaGCACTCATCAAAATGTTTT | + |
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Preference number: 4 (lower is better) Translates to: FACINIRGRCLTEWVGCGFSFGY*HSSKCF Trigger: AAAACATTTTGATGAGTGCCAGTACCCAAACGAGAA...TCCACATCCAACCCATTCTGTCAGACATCTTCCTCTAATATTTATGCATGCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CAA 90 bp | ATCAAAGACCTGAAAGGTGTCAGCTGGGGTGGAGGGGTTTCTCAGAGTAAGCCACGGTTCTTGAGGTATTaGGGATCTGATTTCTATGGG | + |
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Preference number: 5 (lower is better) Translates to: IKDLKGVSWGGGVSQSKPRFLRY*GSDFYG Trigger: CCCATAGAAATCAGATCCCAAATACCTCAAGAACCG...TGGCTTACTCTGAGAAACCCCTCCACCCCAGCTGACACCTTTCAGGTCTTTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CAA 90 bp | ATCAAAGACCTGAAAGGTGTCAGCTGGGGTGGAGGGGTTTCTCAGAGTAAGCCACAGGGACTGAAAGACTaGATTGCATTGTACTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: IKDLKGVSWGGGVSQSKPQGLKD*IALYFL Trigger: CAGGAAGTACAATGCAATCAAGTCTTTCAGTCCCTG...TGGCTTACTCTGAGAAACCCCTCCACCCCAGCTGACACCTTTCAGGTCTTTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CAA 90 bp | CTCTTTTATGACTCCAACTCCAAAGACACTTGCATACATGCATTCTTGCCTTTGAGCATCCTCTGGGGCTaGGGCAGCATATGCCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: LFYDSNSKDTCIHAFLPLSILWG*GSICQP Trigger: AGGCTGGCATATGCTGCCCAAGCCCCAGAGGATGCT...CAAAGGCAAGAATGCATGTATGCAAGTGTCTTTGGAGTTGGAGTCATAAAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS CCA 90 bp | GACTCTCCATTGTCAGAGGCAACAACAGGTATGGAACCAGGAAAATaGGTTGACTCAGAAACCGCTTTAGAGATTCCATTTGACTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: DSPLSEATTGMEPGK*VDSETALEIPFDSG Trigger: GCCAGAGTCAAATGGAATCTCTAAAGCGGTTTCTGAGTCAACCCATTTTCCTGGTTCCATACCTGTTGTTGCCTCTGACAATGGAGAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CAA 90 bp | ATAGTGTCACTCCAGGAGAGACTACACTCTTTTATGACTCCAACTCCAAAGACATGGCTGCAGTTGAATTaGGGCATGGAATCCTCACCA | + |
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Preference number: 5 (lower is better) Translates to: IVSLQERLHSFMTPTPKTWLQLN*GMESSP Trigger: TGGTGAGGATTCCATGCCCAAATTCAACTGCAGCCA...TGTCTTTGGAGTTGGAGTCATAAAAGAGTGTAGTCTCTCCTGGAGTGACACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CAA 90 bp | ATTTCTCCAAATACTGAGAATAAAGGTGTGTATAACACACTGCTCCATGGCTGTAGGCGCTGCTGTTCTTaGGTGTACACAGTGCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: ISPNTENKGVYNTLLHGCRRCCS*VYTVRS Trigger: AGAACGCACTGTGTACACCAAAGAACAGCAGCGCCT...ACAGCCATGGAGCAGTGTGTTATACACACCTTTATTCTCAGTATTTGGAGAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CAA 90 bp | CACTCTTTTATGACTCCAACTCCAAAGACACTTGCATACATGCATTCTTGCCTTCACATGGACTCTCCATaGTCAGAGGCAACAACAGGT | + |
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Preference number: 5 (lower is better) Translates to: HSFMTPTPKTLAYMHSCLHMDSP*SEATTG Trigger: ACCTGTTGTTGCCTCTGACAATGGAGAGTCCATGTG...AAGGCAAGAATGCATGTATGCAAGTGTCTTTGGAGTTGGAGTCATAAAAGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CAA 90 bp | CACTCTTTTATGACTCCAACTCCAAAGACACTTGCATACATGCATTCTTGCCTTGATTCCTGGCTGCAGTaGAATTTGGGCATGGAATCC | + |
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Preference number: 5 (lower is better) Translates to: HSFMTPTPKTLAYMHSCLDSWLQ*NLGMES Trigger: GGATTCCATGCCCAAATTCAACTGCAGCCAGGAATC...AAGGCAAGAATGCATGTATGCAAGTGTCTTTGGAGTTGGAGTCATAAAAGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS CCA 90 bp | GCTTTAGAGATTCCATTTGACTCTGGCAGTGCTTGTTTAATATTCTaGAGGTTCATCCGCCTGTACTTAGCTCGGTTGTTCTTGAACCAT | + |
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Preference number: 5 (lower is better) Translates to: ALEIPFDSGSACLIF*RFIRLYLARLFLNH Trigger: ATGGTTCAAGAACAACCGAGCTAAGTACAGGCGGATGAACCTCCAGAATATTAAACAAGCACTGCCAGAGTCAAATGGAATCTCTAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS-3UTR CAA 90 bp | CACTCTTTTATGACTCCAACTCCAAAGACACTTGCATACATGCATTCTTGCCTTATCAAGCAGGTATTCTaGTGGACAACACATGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: HSFMTPTPKTLAYMHSCLIKQVF*WTTHVP Trigger: GGGGACATGTGTTGTCCACAAGAATACCTGCTTGAT...AAGGCAAGAATGCATGTATGCAAGTGTCTTTGGAGTTGGAGTCATAAAAGAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS TCA 90 bp | GTTGTTCTTGAACCATATCTTGATCTCCATCTTTGTAACACCAACTaGTACTGCCAGCTCCATAATTTTCTTCTCGTTTGGGTACTGGCA | + |
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Preference number: 5 (lower is better) Translates to: VVLEPYLDLHLCNTN*YCQLHNFLLVWVLA Trigger: TGCCAGTACCCAAACGAGAAGAAAATTATGGAGCTGGCAGTATCAGTTGGTGTTACAAAGATGGAGATCAAGATATGGTTCAAGAACAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS-3UTR CAA 90 bp | CTTGCCTTTGCATGCATAAATATTAGAGGAAGATGTCTGACAGAATGGGTTGGATTAGCTCGGTTGTTCTaGAACCATATCTTGATCTCC | + |
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Preference number: 5 (lower is better) Translates to: LAFACINIRGRCLTEWVGLARLF*NHILIS Trigger: GGAGATCAAGATATGGTTCAAGAACAACCGAGCTAA...TCCAACCCATTCTGTCAGACATCTTCCTCTAATATTTATGCATGCAAAGGCAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS-3UTR CAA 90 bp | CACAGCCACCCCAAATATATACTAAACAAAGTATCATTTTCTACCAATGGACTCAAAGACTTGATTGCATaGTACTTCCTGGGGTCACTA | + |
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Preference number: 5 (lower is better) Translates to: HSHPKYILNKVSFSTNGLKDLIA*YFLGSL Trigger: TAGTGACCCCAGGAAGTACAATGCAATCAAGTCTTT...GAGTCCATTGGTAGAAAATGATACTTTGTTTAGTATATATTTGGGGTGGCTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS CAA 72 bp | TGCAGATGGACCGGAATTGTGAGCATCCTCTGGGGCTaGGGCAGCATATGCCAGCCTGACTGGAGCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: CRWTGIVSILWG*GSICQPDWSFS Trigger: GCTGAAGCTCCAGTCAGGCTGGCATATGCTGCCCAAGCCCCAGAGGATGCTCACAATTCCGGTCCATCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS CAA 90 bp | GAGCTCGTCTGCAGATGGACCGGAATTGTGAGCATCCTCTGGGGCTaGGGCAGCATATGCCAGCCTGACTGGAGCTTCAGCTACTGCTAT | + |
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Preference number: 6 (lower is better) Translates to: ELVCRWTGIVSILWG*GSICQPDWSFSYCY Trigger: ATAGCAGTAGCTGAAGCTCCAGTCAGGCTGGCATATGCTGCCCAAGCCCCAGAGGATGCTCACAATTCCGGTCCATCTGCAGACGAGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS TCA 72 bp | GAGCATCCTCTGGGGCTTGGGCAGCATATGCCAGCCTaGCTGGAGCTTCAGCTACTGCTATGTCAGTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: EHPLGLGQHMPA*LELQLLLCQSD Trigger: ATCAGACTGACATAGCAGTAGCTGAAGCTCCAGTCAGGCTGGCATATGCTGCCCAAGCCCCAGAGGATGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS GCA 72 bp | TCAAAAGTCTTCAAGGATCCTTTGCCAGAGCTCGTCTaGAGATGGACCGGAATTGTGAGCATCCTCTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: SKVFKDPLPELV*RWTGIVSILWG Trigger: GCCCCAGAGGATGCTCACAATTCCGGTCCATCTGCAGACGAGCTCTGGCAAAGGATCCTTGAAGACTTTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS CAA 72 bp | AGCTGTAACAGGGGCATGGCCATCAAGCAGGTATTCTaGTGGACAACACATGTCCCCATCACAGGCCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: SCNRGMAIKQVF*WTTHVPITGLK Trigger: TTTCAGGCCTGTGATGGGGACATGTGTTGTCCACAAGAATACCTGCTTGATGGCCATGCCCCTGTTACAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS GCA 72 bp | TTTGCAGCAGGCGCTGCTGTTCTTTGGTGTACACAGTaGGTTCTTTTCGAAACTTTCTTGAAGCCATTGGGC | + |
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Preference number: 6 (lower is better) Translates to: FAAGAAVLWCTQ*VLFETFLKPLG Trigger: GCCCAATGGCTTCAAGAAAGTTTCGAAAAGAACGCACTGTGTACACCAAAGAACAGCAGCGCCTGCTGCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS TCA 72 bp | GTTGAATTTGGGCATGGAATCCTCACCAAATGTGCCTaGACACATGGACTCTCCATTGTCAGAGGCAACAAC | + |
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Preference number: 6 (lower is better) Translates to: VEFGHGILTKCA*THGLSIVRGNN Trigger: GTTGTTGCCTCTGACAATGGAGAGTCCATGTGTTCAGGCACATTTGGTGAGGATTCCATGCCCAAATTCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098802.10 |
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| CDS GCA 72 bp | TTCTCGTTTGGGTACTGGCACTCATCAAAATGTTTTTaGAGCAGGCGCTGCTGTTCTTTGGTGTACACAGTG | + |
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Preference number: 6 (lower is better) Translates to: FSFGYWHSSKCF*SRRCCSLVYTV Trigger: CACTGTGTACACCAAAGAACAGCAGCGCCTGCTGCAAAAACATTTTGATGAGTGCCAGTACCCAAACGAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS CCA 72 bp | ATTCCATTTGACTCTGGCAGTGCTTGTTTAATATTCTaGAGGTTCATCCGCCTGTACTTAGCTCGGTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: IPFDSGSACLIF*RFIRLYLARLF Trigger: GAACAACCGAGCTAAGTACAGGCGGATGAACCTCCAGAATATTAAACAAGCACTGCCAGAGTCAAATGGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS CAA 72 bp | TGGAGGTTCATCCGCCTGTACTTAGCTCGGTTGTTCTaGAACCATATCTTGATCTCCATCTTTGTAACACCA | + |
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Preference number: 6 (lower is better) Translates to: WRFIRLYLARLF*NHILISIFVTP Trigger: TGGTGTTACAAAGATGGAGATCAAGATATGGTTCAAGAACAACCGAGCTAAGTACAGGCGGATGAACCTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS CAA 72 bp | ATATTCTGGAGGTTCATCCGCCTGTACTTAGCTCGGTaGTTCTTGAACCATATCTTGATCTCCATCTTTGTA | + |
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Preference number: 6 (lower is better) Translates to: IFWRFIRLYLAR*FLNHILISIFV Trigger: TACAAAGATGGAGATCAAGATATGGTTCAAGAACAACCGAGCTAAGTACAGGCGGATGAACCTCCAGAATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS CAA 90 bp | GCTTGTTTAATATTCTGGAGGTTCATCCGCCTGTACTTAGCTCGGTaGTTCTTGAACCATATCTTGATCTCCATCTTTGTAACACCAACT | + |
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Preference number: 6 (lower is better) Translates to: ACLIFWRFIRLYLAR*FLNHILISIFVTPT Trigger: AGTTGGTGTTACAAAGATGGAGATCAAGATATGGTTCAAGAACAACCGAGCTAAGTACAGGCGGATGAACCTCCAGAATATTAAACAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS CAA 90 bp | TTAATATTCTGGAGGTTCATCCGCCTGTACTTAGCTCGGTTGTTCTaGAACCATATCTTGATCTCCATCTTTGTAACACCAACTGATACT | + |
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Preference number: 6 (lower is better) Translates to: LIFWRFIRLYLARLF*NHILISIFVTPTDT Trigger: AGTATCAGTTGGTGTTACAAAGATGGAGATCAAGATATGGTTCAAGAACAACCGAGCTAAGTACAGGCGGATGAACCTCCAGAATATTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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| CDS TCA 72 bp | TTTGGTGTACACAGTGCGTTCTTTTCGAAACTTTCTTaGAGCCATTGGGCCAGTTTGTTTGTTAACATATTT | + |
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Preference number: 6 (lower is better) Translates to: FGVHSAFFSKLS*SHWASLFVNIF Trigger: AAATATGTTAACAAACAAACTGGCCCAATGGCTTCAAGAAAGTTTCGAAAAGAACGCACTGTGTACACCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098802.10 ENSMUST00000173053.2 ENSMUST00000173455.8 |
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