Pregenerated sensors for OBOX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074369Ensembl transcript IDs: ENSMUST00000036575.16, ENSMUST00000172478.3, ENSMUST00000174076.8, ENSMUST00000174305.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTGTAAGCTGGAGTGGAGGGGTTTCTCATGGCAAGACAGTCATCTaGTGTGTCAAAAGTCTTCAAGGATCCTTTGCCAGAGCTTGTCTG | + |
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Preference number: 1 (lower is better) Translates to: GVSWSGGVSHGKTVI*CVKSLQGSFARACL Trigger: CAGACAAGCTCTGGCAAAGGATCCTTGAAGACTTTTGACACATCAGATGACTGTCTTGCCATGAGAAACCCCTCCACTCCAGCTTACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| 3UTR TCA 90 bp | CATCTCAGGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTaGATTTGGGAATGGAATCCTCACCAAATGTGCCTGAACACATGG | + |
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Preference number: 1 (lower is better) Translates to: HLRPENNAGKIPSCS*IWEWNPHQMCLNTW Trigger: CCATGTGTTCAGGCACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCCTGAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| 3UTR TCA 90 bp | CTAGCTGCAGTTGAATTTGGGAATGGAATCCTCACCAAATGTGCCTaGACACATGGACTCTCCATTGTCAGAGGCAACAACAGGAAAATG | + |
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Preference number: 1 (lower is better) Translates to: LAAVEFGNGILTKCA*THGLSIVRGNNRKM Trigger: CATTTTCCTGTTGTTGCCTCTGACAATGGAGAGTCCATGTGTTCAGGCACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGCAGCATATGCCAGCCCGACTGGAGCTTCAGCTACTGCTAAGTGTGATATTCTCACCAAATGTGCCTaGACACATGGACTCTCCATT | + |
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Preference number: 2 (lower is better) Translates to: WAAYASPTGASATAKCDILTKCA*THGLSI Trigger: AATGGAGAGTCCATGTGTTCAGGCACATTTGGTGAG...AATATCACACTTAGCAGTAGCTGAAGCTCCAGTCGGGCTGGCATATGCTGCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| 3UTR-3UTR TCA 90 bp | ACACATGGCCCCATCTCAGGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCACTCACCAAATGTGCCTaGACACATGGACTCTCCATT | + |
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Preference number: 2 (lower is better) Translates to: THGPISGLKTMQGRFLAALTKCA*THGLSI Trigger: AATGGAGAGTCCATGTGTTCAGGCACATTTGGTGAG...TGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCCTGAGATGGGGCCATGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| 3UTR-3UTR GCA 90 bp | GCATATGCCAGCCCGACTGGAGCTTCAGCTACTGCTAAGTGTGATATTCAACTGTCAAGCACATATTCTTaGGTACAACACATGGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: AYASPTGASATAKCDIQLSSTYS*VQHMAP Trigger: TGGGGCCATGTGTTGTACGCAAGAATATGTGCTTGA...CAGTTGAATATCACACTTAGCAGTAGCTGAAGCTCCAGTCGGGCTGGCATATGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| 3UTR-3UTR TCA 90 bp | GGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGACTCACCAAATGTGCCTaGACACATGGACTCTCCATT | + |
|
Preference number: 2 (lower is better) Translates to: GLKTMQGRFLAAVEFGNGLTKCA*THGLSI Trigger: AATGGAGAGTCCATGTGTTCAGGCACATTTGGTGAG...TCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| 3UTR-3UTR TCA 90 bp | CAAATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGTTTAGAGCTTCCATTTaGCTCTGGCAGTGCTTGTTC | + |
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Preference number: 2 (lower is better) Translates to: QIQRIKVYITHFFMAVRLFRASI*LWQCLF Trigger: GAACAAGCACTGCCAGAGTCAAATGGAAGCTCTAAA...CAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| 3UTR-3UTR TCA 90 bp | CCAAATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGCAAGACAGTCATCTaGTGTGTCAAAAGTCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: PNTENKGVYNTLLHGCKVGKTVI*CVKSLQ Trigger: TTGAAGACTTTTGACACATCAGATGACTGTCTTGCC...AACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| 3UTR CCA 72 bp | TGGACTCGTCAAGGACCTGAGAGGTGTAAGCTGGAGTaGAGGGGTTTCTCATGGCAAGACAGTCATCTGATG | + |
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Preference number: 3 (lower is better) Translates to: WTRQGPERCKLE*RGFSWQDSHLM Trigger: CATCAGATGACTGTCTTGCCATGAGAAACCCCTCCACTCCAGCTTACACCTCTCAGGTCCTTGACGAGTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| 3UTR-3UTR CAA 90 bp | TGGGCAGCATATGCCAGCCCGACTGGAGCTTCAGCTACTGCTAAGTGTGATATTCACATGGACTCTCCATaGTCAGAGGCAACAACAGGA | + |
|
Preference number: 3 (lower is better) Translates to: WAAYASPTGASATAKCDIHMDSP*SEATTG Trigger: TCCTGTTGTTGCCTCTGACAATGGAGAGTCCATGTG...AATATCACACTTAGCAGTAGCTGAAGCTCCAGTCGGGCTGGCATATGCTGCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| 3UTR TCA 72 bp | TGGAGTGGAGGGGTTTCTCATGGCAAGACAGTCATCTaGTGTGTCAAAAGTCTTCAAGGATCCTTTGCCAGA | + |
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Preference number: 3 (lower is better) Translates to: WSGGVSHGKTVI*CVKSLQGSFAR Trigger: TCTGGCAAAGGATCCTTGAAGACTTTTGACACATCAGATGACTGTCTTGCCATGAGAAACCCCTCCACTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| 3UTR TCA 72 bp | GTTGAATTTGGGAATGGAATCCTCACCAAATGTGCCTaGACACATGGACTCTCCATTGTCAGAGGCAACAAC | + |
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Preference number: 3 (lower is better) Translates to: VEFGNGILTKCA*THGLSIVRGNN Trigger: GTTGTTGCCTCTGACAATGGAGAGTCCATGTGTTCAGGCACATTTGGTGAGGATTCCATTCCCAAATTCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| 3UTR TCA 72 bp | CCTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTaGATTTGGGAATGGAATCCTCACCAAATGTGCCTG | + |
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Preference number: 3 (lower is better) Translates to: PENNAGKIPSCS*IWEWNPHQMCL Trigger: CAGGCACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| 3UTR TCA 72 bp | CTTCAGCTACTGCTAAGTGTGATATTCAACTGCTGCTaGTTGACCAGAGTTCCAAGCTGTAACAGGGGTATG | + |
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Preference number: 3 (lower is better) Translates to: LQLLLSVIFNCC*LTRVPSCNRGM Trigger: CATACCCCTGTTACAGCTTGGAACTCTGGTCAATCAGCAGCAGTTGAATATCACACTTAGCAGTAGCTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| CDS-3UTR TCA 90 bp | ACACATGGCCCCATCTCAGGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCATTCCTTGCCGGTTCTTaGGGTATTTGGGAACTTATT | + |
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Preference number: 4 (lower is better) Translates to: THGPISGLKTMQGRFLAAFLAGS*GIWELI Trigger: AATAAGTTCCCAAATACCTCAAGAACCGGCAAGGAA...TGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCCTGAGATGGGGCCATGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| CDS-3UTR GCA 90 bp | ACACATGGCCCCATCTCAGGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCATCATCAAAATGTTTTTaGAGCAGGCCCTGCTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: THGPISGLKTMQGRFLAASSKCF*SRPCSS Trigger: AGAAGAGCAGGGCCTGCTGCAAAAACATTTTGATGA...TGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCCTGAGATGGGGCCATGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| CDS-3UTR CCA 90 bp | GGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCCACTTGGAGTTTTaGATGCAAGGAGGGACCTTC | + |
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Preference number: 4 (lower is better) Translates to: GLKTMQGRFLAAVEFGNGIHLEF*MQGGTF Trigger: GAAGGTCCCTCCTTGCATCCAAAACTCCAAGTGGAT...TCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| CDS-3UTR CCA 90 bp | TCAGAGGCAACAACAGGAAAATGGGTTGACTCAGAAACCGCTTTAGAGCTTCCAATCCACTTGGAGTTTTaGATGCAAGGAGGGACCTTC | + |
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Preference number: 4 (lower is better) Translates to: SEATTGKWVDSETALELPIHLEF*MQGGTF Trigger: GAAGGTCCCTCCTTGCATCCAAAACTCCAAGTGGAT...TGGAAGCTCTAAAGCGGTTTCTGAGTCAACCCATTTTCCTGTTGTTGCCTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CCA 90 bp | CAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCCTCACCAAATGTATCCACTTGGAGTTTTaGATGCAAGGAGGGACCTTC | + |
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Preference number: 4 (lower is better) Translates to: QGRFLAAVEFGNGILTKCIHLEF*MQGGTF Trigger: GAAGGTCCCTCCTTGCATCCAAAACTCCAAGTGGAT...ACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CCA 90 bp | GCATATGCCAGCCCGACTGGAGCTTCAGCTACTGCTAAGTGTGATATTCAACTGATATTCGAATCCACTTaGAGTTTTGGATGCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: AYASPTGASATAKCDIQLIFEST*SFGCKE Trigger: CTCCTTGCATCCAAAACTCCAAGTGGATTCGAATAT...CAGTTGAATATCACACTTAGCAGTAGCTGAAGCTCCAGTCGGGCTGGCATATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| CDS-3UTR GCA 90 bp | GTTGACTCAGAAACCGCTTTAGAGCTTCCATTTGACTCTGGCAGTGCTTGTTCATCATCAAAATGTTTTTaGAGCAGGCCCTGCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: VDSETALELPFDSGSACSSSKCF*SRPCSS Trigger: AGAAGAGCAGGGCCTGCTGCAAAAACATTTTGATGA...TGAACAAGCACTGCCAGAGTCAAATGGAAGCTCTAAAGCGGTTTCTGAGTCAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR TCA 90 bp | CAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCCTCACCAAATGTTTCCTTGCCGGTTCTTaGGGTATTTGGGAACTTATT | + |
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Preference number: 4 (lower is better) Translates to: QGRFLAAVEFGNGILTKCFLAGS*GIWELI Trigger: AATAAGTTCCCAAATACCTCAAGAACCGGCAAGGAA...ACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR TCA 90 bp | CCATTGTCAGAGGCAACAACAGGAAAATGGGTTGACTCAGAAACCGCTTTAGAGTTTTCGAAACTTTCTTaGAGCCATTGGGCTAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: PLSEATTGKWVDSETALEFSKLS*SHWASL Trigger: CAAACTAGCCCAATGGCTTCAAGAAAGTTTCGAAAA...CTCTAAAGCGGTTTCTGAGTCAACCCATTTTCCTGTTGTTGCCTCTGACAATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR GCA 90 bp | CAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCCTCACCAAATGTTCATCAAAATGTTTTTaGAGCAGGCCCTGCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QGRFLAAVEFGNGILTKCSSKCF*SRPCSS Trigger: AGAAGAGCAGGGCCTGCTGCAAAAACATTTTGATGA...ACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CCA 90 bp | GGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATATTCGAATCCACTTaGAGTTTTGGATGCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GLKTMQGRFLAAVEFGNGIFEST*SFGCKE Trigger: CTCCTTGCATCCAAAACTCCAAGTGGATTCGAATAT...TCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| CDS-3UTR TCA 90 bp | TCAGAAACCGCTTTAGAGCTTCCATTTGACTCTGGCAGTGCTTGTTCAATATTCTTCCTTGCCGGTTCTTaGGGTATTTGGGAACTTATT | + |
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Preference number: 4 (lower is better) Translates to: SETALELPFDSGSACSIFFLAGS*GIWELI Trigger: AATAAGTTCCCAAATACCTCAAGAACCGGCAAGGAA...GAATATTGAACAAGCACTGCCAGAGTCAAATGGAAGCTCTAAAGCGGTTTCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR TCA 90 bp | CTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCTTCCTTGCCGGTTCTTaGGGTATTTGGGAACTTATT | + |
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Preference number: 4 (lower is better) Translates to: LKTMQGRFLAAVEFGNGIFLAGS*GIWELI Trigger: AATAAGTTCCCAAATACCTCAAGAACCGGCAAGGAA...GATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | ACACATGGCCCCATCTCAGGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCAAGGCCCTGCTCTTCTTaGGTGTACACAGTTCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: THGPISGLKTMQGRFLAARPCSS*VYTVRS Trigger: AGAACGAACTGTGTACACCAAAGAAGAGCAGGGCCT...TGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCCTGAGATGGGGCCATGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | TGGGCAGCATATGCCAGCCCGACTGGAGCTTCAGCTACTGCTAAGTGTGATATTCAGGGACTGAAAGACTaGATTTCGTTGTACTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: WAAYASPTGASATAKCDIQGLKD*ISLYFL Trigger: CAGGAAGTACAACGAAATCAAGTCTTTCAGTCCCTG...AATATCACACTTAGCAGTAGCTGAAGCTCCAGTCGGGCTGGCATATGCTGCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| CDS-3UTR CAA 90 bp | ACACATGGCCCCATCTCAGGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCACAGGGACTGAAAGACTaGATTTCGTTGTACTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: THGPISGLKTMQGRFLAAQGLKD*ISLYFL Trigger: CAGGAAGTACAACGAAATCAAGTCTTTCAGTCCCTG...TGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCCTGAGATGGGGCCATGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | CCAAATGTGCCTGAACACATGGACTCTCCATTGTCAGAGGCAACAACAGGAAAAAGGCCCTGCTCTTCTTaGGTGTACACAGTTCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: PNVPEHMDSPLSEATTGKRPCSS*VYTVRS Trigger: AGAACGAACTGTGTACACCAAAGAAGAGCAGGGCCT...TTTTCCTGTTGTTGCCTCTGACAATGGAGAGTCCATGTGTTCAGGCACATTTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | CAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCCTCACCAAATGTAGGCCCTGCTCTTCTTaGGTGTACACAGTTCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: QGRFLAAVEFGNGILTKCRPCSS*VYTVRS Trigger: AGAACGAACTGTGTACACCAAAGAAGAGCAGGGCCT...ACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | TCAGGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATAGGCCCTGCTCTTCTTaGGTGTACACAGTTCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: SGLKTMQGRFLAAVEFGNRPCSS*VYTVRS Trigger: AGAACGAACTGTGTACACCAAAGAAGAGCAGGGCCT...ATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | CCAAATGTGCCTGAACACATGGACTCTCCATTGTCAGAGGCAACAACAGGAAAACGGTTCTTGAGGTATTaGGGAACTTATTTCTATGGG | + |
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Preference number: 5 (lower is better) Translates to: PNVPEHMDSPLSEATTGKRFLRY*GTYFYG Trigger: CCCATAGAAATAAGTTCCCAAATACCTCAAGAACCG...TTTTCCTGTTGTTGCCTCTGACAATGGAGAGTCCATGTGTTCAGGCACATTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | ACCGCTTTAGAGCTTCCATTTGACTCTGGCAGTGCTTGTTCAATATTCTGGAGGAAAGACTTGATTTCGTaGTACTTCCTGGGGTCACTA | + |
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Preference number: 5 (lower is better) Translates to: TALELPFDSGSACSIFWRKDLIS*YFLGSL Trigger: TAGTGACCCCAGGAAGTACAACGAAATCAAGTCTTT...CCTCCAGAATATTGAACAAGCACTGCCAGAGTCAAATGGAAGCTCTAAAGCGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | CAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCCTCACCAAATGTCAGGGACTGAAAGACTaGATTTCGTTGTACTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: QGRFLAAVEFGNGILTKCQGLKD*ISLYFL Trigger: CAGGAAGTACAACGAAATCAAGTCTTTCAGTCCCTG...ACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | TCAGGCCTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATCGGTTCTTGAGGTATTaGGGAACTTATTTCTATGGG | + |
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Preference number: 5 (lower is better) Translates to: SGLKTMQGRFLAAVEFGNRFLRY*GTYFYG Trigger: CCCATAGAAATAAGTTCCCAAATACCTCAAGAACCG...ATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAGGCCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | TCAGAAACCGCTTTAGAGCTTCCATTTGACTCTGGCAGTGCTTGTTCAATATTCCAGGGACTGAAAGACTaGATTTCGTTGTACTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SETALELPFDSGSACSIFQGLKD*ISLYFL Trigger: CAGGAAGTACAACGAAATCAAGTCTTTCAGTCCCTG...GAATATTGAACAAGCACTGCCAGAGTCAAATGGAAGCTCTAAAGCGGTTTCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | CCATTGTCAGAGGCAACAACAGGAAAATGGGTTGACTCAGAAACCGCTTTAGAGTCCACAATTTTCTTCTaGTTTGGGTACTGCACTCAT | + |
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Preference number: 5 (lower is better) Translates to: PLSEATTGKWVDSETALESTIFF*FGYCTH Trigger: ATGAGTGCAGTACCCAAACAAGAAGAAAATTGTGGA...CTCTAAAGCGGTTTCTGAGTCAACCCATTTTCCTGTTGTTGCCTCTGACAATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | GTTGACTCAGAAACCGCTTTAGAGCTTCCATTTGACTCTGGCAGTGCTTGTTCATCCACAATTTTCTTCTaGTTTGGGTACTGCACTCAT | + |
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Preference number: 5 (lower is better) Translates to: VDSETALELPFDSGSACSSTIFF*FGYCTH Trigger: ATGAGTGCAGTACCCAAACAAGAAGAAAATTGTGGA...TGAACAAGCACTGCCAGAGTCAAATGGAAGCTCTAAAGCGGTTTCTGAGTCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | CTGAAAACAATGCAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCCGGTTCTTGAGGTATTaGGGAACTTATTTCTATGGG | + |
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Preference number: 5 (lower is better) Translates to: LKTMQGRFLAAVEFGNGIRFLRY*GTYFYG Trigger: CCCATAGAAATAAGTTCCCAAATACCTCAAGAACCG...GATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTGCATTGTTTTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | CAGGGAAGATTCCTAGCTGCAGTTGAATTTGGGAATGGAATCCTCACCAAATGTTCCACAATTTTCTTCTaGTTTGGGTACTGCACTCAT | + |
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Preference number: 5 (lower is better) Translates to: QGRFLAAVEFGNGILTKCSTIFF*FGYCTH Trigger: ATGAGTGCAGTACCCAAACAAGAAGAAAATTGTGGA...ACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCTAGGAATCTTCCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS-3UTR CAA 90 bp | CAAATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGCGGTTCTTGAGGTATTaGGGAACTTATTTCTATGGG | + |
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Preference number: 5 (lower is better) Translates to: QIQRIKVYITHFFMAVRLRFLRY*GTYFYG Trigger: CCCATAGAAATAAGTTCCCAAATACCTCAAGAACCG...CAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| CDS-3UTR CAA 90 bp | CCAAATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTTCCACAATTTTCTTCTaGTTTGGGTACTGCACTCAT | + |
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Preference number: 5 (lower is better) Translates to: PNTENKGVYNTLLHGCKVSTIFF*FGYCTH Trigger: ATGAGTGCAGTACCCAAACAAGAAGAAAATTGTGGA...AACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATTTGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036575.16 |
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| CDS CAA 72 bp | GTAGGTTCCTTTCAGGGACTGAAAGACTTGATTTCGTaGTACTTCCTGGGGTCACTAGGGGACTCTGACGCA | + |
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Preference number: 6 (lower is better) Translates to: VGSFQGLKDLIS*YFLGSLGDSDA Trigger: TGCGTCAGAGTCCCCTAGTGACCCCAGGAAGTACAACGAAATCAAGTCTTTCAGTCCCTGAAAGGAACCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS GCA 72 bp | CTTCTTGTTTGGGTACTGCACTCATCAAAATGTTTTTaGAGCAGGCCCTGCTCTTCTTTGGTGTACACAGTT | + |
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Preference number: 6 (lower is better) Translates to: LLVWVLHSSKCF*SRPCSSLVYTV Trigger: AACTGTGTACACCAAAGAAGAGCAGGGCCTGCTGCAAAAACATTTTGATGAGTGCAGTACCCAAACAAGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS CAA 72 bp | TTGGGAACTTATTTCTATGGGTATATTCGAATCCACTaGGAGTTTTGGATGCAAGGAGGGACCTTCCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: LGTYFYGYIRIH*EFWMQGGTFRH Trigger: ATGGCGGAAGGTCCCTCCTTGCATCCAAAACTCCAAGTGGATTCGAATATACCCATAGAAATAAGTTCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS CAA 90 bp | GTTCGTTCTTTTCGAAACTTTCTTGAAGCCATTGGGCTAGTTTGTTaGTTAACATATTTATCTGACAGTGGCATACAACCTGATTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: VRSFRNFLEAIGLVC*LTYLSDSGIQPDCL Trigger: AAGACAATCAGGTTGTATGCCACTGTCAGATAAATATGTTAACAAACAAACTAGCCCAATGGCTTCAAGAAAGTTTCGAAAAGAACGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS CAA 72 bp | TTTCGAAACTTTCTTGAAGCCATTGGGCTAGTTTGTTaGTTAACATATTTATCTGACAGTGGCATACAACCT | + |
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Preference number: 6 (lower is better) Translates to: FRNFLEAIGLVC*LTYLSDSGIQP Trigger: AGGTTGTATGCCACTGTCAGATAAATATGTTAACAAACAAACTAGCCCAATGGCTTCAAGAAAGTTTCGAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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| CDS TCA 72 bp | TTTGGTGTACACAGTTCGTTCTTTTCGAAACTTTCTTaGAGCCATTGGGCTAGTTTGTTTGTTAACATATTT | + |
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Preference number: 6 (lower is better) Translates to: FGVHSSFFSKLS*SHWASLFVNIF Trigger: AAATATGTTAACAAACAAACTAGCCCAATGGCTTCAAGAAAGTTTCGAAAAGAACGAACTGTGTACACCAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036575.16 ENSMUST00000172478.3 ENSMUST00000174076.8 ENSMUST00000174305.8 |
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