Pregenerated sensors for OBOX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054310Ensembl transcript IDs: ENSMUST00000067288.15, ENSMUST00000172463.8, ENSMUST00000172881.8, ENSMUST00000173245.2, ENSMUST00000173443.8, ENSMUST00000181001.8
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGGGCAAGCCAGTCATCTaGTGTGTCAAAAGTCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: QRIKVYITHFFMAVRLDSGKPVI*CVKSLQ Trigger: TTGAAGACTTTTGACACATCAGATGACTGGCTTGCC...CGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGTCGGCAAGCCAGTCATCTaGTGTGTCAAAAGTCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: ENKGVYNTLLHGCKVGLVGKPVI*CVKSLQ Trigger: TTGAAGACTTTTGACACATCAGATGACTGGCTTGCC...GACGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| 3UTR CCA 72 bp | TGGACTCGTCAAGGACCTGAGAGGTGTAAGCTGGAGTaGAGGGGTTTCTCATGGCAAGCCAGTCATCTGATG | + |
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Preference number: 3 (lower is better) Translates to: WTRQGPERCKLE*RGFSWQASHLM Trigger: CATCAGATGACTGGCTTGCCATGAGAAACCCCTCCACTCCAGCTTACACCTCTCAGGTCCTTGACGAGTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| 3UTR TCA 72 bp | TGGAGTGGAGGGGTTTCTCATGGCAAGCCAGTCATCTaGTGTGTCAAAAGTCTTCAAGGATCCTTTGCTAGA | + |
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Preference number: 3 (lower is better) Translates to: WSGGVSHGKPVI*CVKSLQGSFAR Trigger: TCTAGCAAAGGATCCTTGAAGACTTTTGACACATCAGATGACTGGCTTGCCATGAGAAACCCCTCCACTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR GCA 90 bp | GGGCAGCATATGCCAGCCCGACTGGAGCTTCAGCTACTGCTAAGTAAGTGTGATACTTGGAGTTTTGGATaGAAGGAGGGACCTTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: GQHMPARLELQLLLSKCDTWSFG*KEGPSA Trigger: GGCGGAAGGTCCCTCCTTGCATCCAAAACTCCAAGT...ATCACACTTACTTAGCAGTAGCTGAAGCTCCAGTCGGGCTGGCATATGCTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CCA 90 bp | GGGCAGCATATGCCAGCCCGACTGGAGCTTCAGCTACTGCTAAGTAAGTGTGATACTTGTTCAATATTCTaGAGGTTCATCCGCCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: GQHMPARLELQLLLSKCDTCSIF*RFIRLY Trigger: GTACAGGCGGATGAACCTCCAGAATATTGAACAAGT...ATCACACTTACTTAGCAGTAGCTGAAGCTCCAGTCGGGCTGGCATATGCTGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR GCA 90 bp | CAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGACTTGGAGTTTTGGATaGAAGGAGGGACCTTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: QRIKVYITHFFMAVRLDSTWSFG*KEGPSA Trigger: GGCGGAAGGTCCCTCCTTGCATCCAAAACTCCAAGT...CGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR TCA 90 bp | GATGTGTCAAAAGTCTTCAAGGATCCTTTGCTAGAGCTTGTCTGCAGATGGAGCTTTTCGAAACTTTCTTaGAGCCATTGGGCCAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: DVSKVFKDPLLELVCRWSFSKLS*SHWASL Trigger: CAAACTGGCCCAATGGCTTCAAGAAAGTTTCGAAAA...GCTCCATCTGCAGACAAGCTCTAGCAAAGGATCCTTGAAGACTTTTGACACATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CCA 90 bp | GCAAGCCAGTCATCTGATGTGTCAAAAGTCTTCAAGGATCCTTTGCTAGAGCTTACTTGTTCAATATTCTaGAGGTTCATCCGCCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: ASQSSDVSKVFKDPLLELTCSIF*RFIRLY Trigger: GTACAGGCGGATGAACCTCCAGAATATTGAACAAGT...AAGCTCTAGCAAAGGATCCTTGAAGACTTTTGACACATCAGATGACTGGCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR TCA 90 bp | AATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGATTTTCGAAACTTTCTTaGAGCCATTGGGCCAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: NTENKGVYNTLLHGCKVGFSKLS*SHWASL Trigger: CAAACTGGCCCAATGGCTTCAAGAAAGTTTCGAAAA...TCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGTCAAGGTTCTTGTTTGGGTACTaGCACTCATCAAAATGTTTT | + |
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Preference number: 4 (lower is better) Translates to: IKVYITHFFMAVRLDSSRFLFGY*HSSKCF Trigger: AAAACATTTTGATGAGTGCCAGTACCCAAACAAGAA...CCTTGACGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CCA 90 bp | AATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGATTCTTGTTTGGGTACTaGCACTCATCAAAATGTTTT | + |
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Preference number: 4 (lower is better) Translates to: NTENKGVYNTLLHGCKVGFLFGY*HSSKCF Trigger: AAAACATTTTGATGAGTGCCAGTACCCAAACAAGAA...TCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | GGGCAGCATATGCCAGCCCGACTGGAGCTTCAGCTACTGCTAAGTAAGTGTGATTCCACAATTTTCTTCTaGTTTGGGTACTGGCACTCA | + |
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Preference number: 5 (lower is better) Translates to: GQHMPARLELQLLLSKCDSTIFF*FGYWHS Trigger: TGAGTGCCAGTACCCAAACAAGAAGAAAATTGTGGA...ATCACACTTACTTAGCAGTAGCTGAAGCTCCAGTCGGGCTGGCATATGCTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | CAGCTACTGCTAAGTAAGTGTGATATTCAACTGCTGCTGATTGACCAGAGTTCCCACATGGACTCTCCATaGTCAGAGGCAACAACAGGA | + |
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Preference number: 5 (lower is better) Translates to: QLLLSKCDIQLLLIDQSSHMDSP*SEATTG Trigger: TCCTGTTGTTGCCTCTGACAATGGAGAGTCCATGTG...GGAACTCTGGTCAATCAGCAGCAGTTGAATATCACACTTACTTAGCAGTAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGTCAAGGAGGCCCTGCTGTTCTTaGGTGTACACAGTTCGTTCT | + |
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Preference number: 5 (lower is better) Translates to: IKVYITHFFMAVRLDSSRRPCCS*VYTVRS Trigger: AGAACGAACTGTGTACACCAAAGAACAGCAGGGCCT...CCTTGACGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | GCAAGCCAGTCATCTGATGTGTCAAAAGTCTTCAAGGATCCTTTGCTAGAGCTTCTTTTCGAAACTTTCTaGAAGCCATTGGGCCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: ASQSSDVSKVFKDPLLELLFETF*KPLGQF Trigger: AAACTGGCCCAATGGCTTCAAGAAAGTTTCGAAAAG...AAGCTCTAGCAAAGGATCCTTGAAGACTTTTGACACATCAGATGACTGGCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | GAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGTCCTCATCAAAATGTTTTaGCAGCAGGCCCTGCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: ENKGVYNTLLHGCKVGLVLIKMF*QQALLF Trigger: GAACAGCAGGGCCTGCTGCAAAAACATTTTGATGAG...GACGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGTCAAGGCTCATCAAAATGTTTTaGCAGCAGGCCCTGCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: IKVYITHFFMAVRLDSSRLIKMF*QQALLF Trigger: GAACAGCAGGGCCTGCTGCAAAAACATTTTGATGAG...CCTTGACGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | GATGTGTCAAAAGTCTTCAAGGATCCTTTGCTAGAGCTTGTCTGCAGATGGAGCCAATTTTCTTCTTGTTaGGGTACTGGCACTCATCAA | + |
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Preference number: 5 (lower is better) Translates to: DVSKVFKDPLLELVCRWSQFSSC*GTGTHQ Trigger: TTGATGAGTGCCAGTACCCAAACAAGAAGAAAATTG...GCTCCATCTGCAGACAAGCTCTAGCAAAGGATCCTTGAAGACTTTTGACACATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | GCAAGCCAGTCATCTGATGTGTCAAAAGTCTTCAAGGATCCTTTGCTAGAGCTTTCCACAATTTTCTTCTaGTTTGGGTACTGGCACTCA | + |
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Preference number: 5 (lower is better) Translates to: ASQSSDVSKVFKDPLLELSTIFF*FGYWHS Trigger: TGAGTGCCAGTACCCAAACAAGAAGAAAATTGTGGA...AAGCTCTAGCAAAGGATCCTTGAAGACTTTTGACACATCAGATGACTGGCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | GCAAGCCAGTCATCTGATGTGTCAAAAGTCTTCAAGGATCCTTTGCTAGAGCTTAGCCATTGGGCCAGTTaGTTTGTTAACATATTTATC | + |
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Preference number: 5 (lower is better) Translates to: ASQSSDVSKVFKDPLLELSHWAS*FVNIFI Trigger: GATAAATATGTTAACAAACAAACTGGCCCAATGGCT...AAGCTCTAGCAAAGGATCCTTGAAGACTTTTGACACATCAGATGACTGGCTTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | CAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGCTTTTCGAAACTTTCTaGAAGCCATTGGGCCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: QRIKVYITHFFMAVRLDSLFETF*KPLGQF Trigger: AAACTGGCCCAATGGCTTCAAGAAAGTTTCGAAAAG...CGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | CAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGTTAGCTCGGTTGTTCTaGAACCAGATCTTAATCTCC | + |
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Preference number: 5 (lower is better) Translates to: QRIKVYITHFFMAVRLDSLARLF*NQILIS Trigger: GGAGATTAAGATCTGGTTCAAGAACAACCGAGCTAA...CGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | AATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACACATGGACTCTCCATaGTCAGAGGCAACAACAGGA | + |
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Preference number: 5 (lower is better) Translates to: NTENKGVYNTLLHGCKVGHMDSP*SEATTG Trigger: TCCTGTTGTTGCCTCTGACAATGGAGAGTCCATGTG...TCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS TCA 90 bp | TATTTATCTGACAGTAGCATACAACCTGATTGTCTTGATGGTCCTTaGGACTCTTGCTTAAGTAGGTTCCTTTCAGGGACTGAAAGACTT | + |
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Preference number: 5 (lower is better) Translates to: YLSDSSIQPDCLDGP*DSCLSRFLSGTERL Trigger: AAGTCTTTCAGTCCCTGAAAGGAACCTACTTAAGCAAGAGTCTCAAGGACCATCAAGACAATCAGGTTGTATGCTACTGTCAGATAAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | GAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACTCGTCAGCCATTGGGCCAGTTaGTTTGTTAACATATTTATC | + |
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Preference number: 5 (lower is better) Translates to: ENKGVYNTLLHGCKVGLVSHWAS*FVNIFI Trigger: GATAAATATGTTAACAAACAAACTGGCCCAATGGCT...GACGAGTCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | AATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGATTAGCTCGGTTGTTCTaGAACCAGATCTTAATCTCC | + |
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Preference number: 5 (lower is better) Translates to: NTENKGVYNTLLHGCKVGLARLF*NQILIS Trigger: GGAGATTAAGATCTGGTTCAAGAACAACCGAGCTAA...TCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS-3UTR CAA 90 bp | AATACAGAGAATAAAGGTGTATATAACACACTTCTTCATGGCTGTAAGGTTGGACAATTTTCTTCTTGTTaGGGTACTGGCACTCATCAA | + |
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Preference number: 5 (lower is better) Translates to: NTENKGVYNTLLHGCKVGQFSSC*GTGTHQ Trigger: TTGATGAGTGCCAGTACCCAAACAAGAAGAAAATTG...TCCAACCTTACAGCCATGAAGAAGTGTGTTATATACACCTTTATTCTCTGTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067288.15 ENSMUST00000181001.8 |
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| CDS CCA 72 bp | CTTCCATTTGACTCTGGCAGTACTTGTTCAATATTCTaGAGGTTCATCCGCCTGTACTTAGCTCGGTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: LPFDSGSTCSIF*RFIRLYLARLF Trigger: GAACAACCGAGCTAAGTACAGGCGGATGAACCTCCAGAATATTGAACAAGTACTGCCAGAGTCAAATGGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS CAA 72 bp | CTTCTTGTTTGGGTACTGGCACTCATCAAAATGTTTTaGCAGCAGGCCCTGCTGTTCTTTGGTGTACACAGT | + |
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Preference number: 6 (lower is better) Translates to: LLVWVLALIKMF*QQALLFFGVHS Trigger: ACTGTGTACACCAAAGAACAGCAGGGCCTGCTGCAAAAACATTTTGATGAGTGCCAGTACCCAAACAAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS CAA 72 bp | TGGAGGTTCATCCGCCTGTACTTAGCTCGGTTGTTCTaGAACCAGATCTTAATCTCCCTCTTTGTAACACCA | + |
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Preference number: 6 (lower is better) Translates to: WRFIRLYLARLF*NQILISLFVTP Trigger: TGGTGTTACAAAGAGGGAGATTAAGATCTGGTTCAAGAACAACCGAGCTAAGTACAGGCGGATGAACCTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS TCA 72 bp | GACAGTAGCATACAACCTGATTGTCTTGATGGTCCTTaGGACTCTTGCTTAAGTAGGTTCCTTTCAGGGACT | + |
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Preference number: 6 (lower is better) Translates to: DSSIQPDCLDGP*DSCLSRFLSGT Trigger: AGTCCCTGAAAGGAACCTACTTAAGCAAGAGTCTCAAGGACCATCAAGACAATCAGGTTGTATGCTACTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS GCA 72 bp | TTCTTGTTTGGGTACTGGCACTCATCAAAATGTTTTTaGAGCAGGCCCTGCTGTTCTTTGGTGTACACAGTT | + |
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Preference number: 6 (lower is better) Translates to: FLFGYWHSSKCF*SRPCCSLVYTV Trigger: AACTGTGTACACCAAAGAACAGCAGGGCCTGCTGCAAAAACATTTTGATGAGTGCCAGTACCCAAACAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS CAA 72 bp | ATATTCTGGAGGTTCATCCGCCTGTACTTAGCTCGGTaGTTCTTGAACCAGATCTTAATCTCCCTCTTTGTA | + |
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Preference number: 6 (lower is better) Translates to: IFWRFIRLYLAR*FLNQILISLFV Trigger: TACAAAGAGGGAGATTAAGATCTGGTTCAAGAACAACCGAGCTAAGTACAGGCGGATGAACCTCCAGAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS CAA 90 bp | TCAATATTCTGGAGGTTCATCCGCCTGTACTTAGCTCGGTTGTTCTaGAACCAGATCTTAATCTCCCTCTTTGTAACACCAACTGATAGT | + |
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Preference number: 6 (lower is better) Translates to: SIFWRFIRLYLARLF*NQILISLFVTPTDS Trigger: ACTATCAGTTGGTGTTACAAAGAGGGAGATTAAGATCTGGTTCAAGAACAACCGAGCTAAGTACAGGCGGATGAACCTCCAGAATATTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS CAA 90 bp | GTTCGTTCTTTTCGAAACTTTCTTGAAGCCATTGGGCCAGTTTGTTaGTTAACATATTTATCTGACAGTAGCATACAACCTGATTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: VRSFRNFLEAIGPVC*LTYLSDSSIQPDCL Trigger: AAGACAATCAGGTTGTATGCTACTGTCAGATAAATATGTTAACAAACAAACTGGCCCAATGGCTTCAAGAAAGTTTCGAAAAGAACGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS TCA 72 bp | TTTGGTGTACACAGTTCGTTCTTTTCGAAACTTTCTTaGAGCCATTGGGCCAGTTTGTTTGTTAACATATTT | + |
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Preference number: 6 (lower is better) Translates to: FGVHSSFFSKLS*SHWASLFVNIF Trigger: AAATATGTTAACAAACAAACTGGCCCAATGGCTTCAAGAAAGTTTCGAAAAGAACGAACTGTGTACACCAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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| CDS CAA 72 bp | TTTCGAAACTTTCTTGAAGCCATTGGGCCAGTTTGTTaGTTAACATATTTATCTGACAGTAGCATACAACCT | + |
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Preference number: 6 (lower is better) Translates to: FRNFLEAIGPVC*LTYLSDSSIQP Trigger: AGGTTGTATGCTACTGTCAGATAAATATGTTAACAAACAAACTGGCCCAATGGCTTCAAGAAAGTTTCGAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000067288.15 ENSMUST00000172463.8 ENSMUST00000172881.8 ENSMUST00000173245.2 ENSMUST00000173443.8 ENSMUST00000181001.8 |
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