Pregenerated sensors for OAS1G (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066861Ensembl transcript IDs: ENSMUST00000086368.12, ENSMUST00000162096.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCACAGCCACACATCAGCCTCTTCAGCCAACCGCCTCCAGCCCTCTaGGTTCCCACCAGCCACATTCCCTGTCGGGTCAGCTGGGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: PQPHISLFSQPPPAL*VPTSHIPCRVSWVQ Trigger: CTGGACCCAGCTGACCCGACAGGGAATGTGGCTGGTGGGAACCCAGAGGGCTGGAGGCGGTTGGCTGAAGAGGCTGATGTGTGGCTGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR TCA 90 bp | CTCCCTCACTGGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCCTaGCCAGCAGTCTCCTGGGCAGGTGCTGCTGTGCTCACAGCAGGA | + |
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Preference number: 1 (lower is better) Translates to: LPHWVMGLQQSSKCP*PAVSWAGAAVLTAG Trigger: TCCTGCTGTGAGCACAGCAGCACCTGCCCAGGAGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGTGAGGGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR GCA 90 bp | GCAGAGCAGCAAATGCCCCTGACCAGCAGTCTCCTGGGCAGGTGCTaGTGTGCTCACAGCAGGATACATGTCCAGTTCTCCTCCACCTGC | + |
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Preference number: 1 (lower is better) Translates to: AEQQMPLTSSLLGRC*CAHSRIHVQFSSTC Trigger: GCAGGTGGAGGAGAACTGGACATGTATCCTGCTGTGAGCACAGCAGCACCTGCCCAGGAGACTGCTGGTCAGGGGCATTTGCTGCTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR TCA 90 bp | CATTGTGATTTAACTAAATGTGATAAAGCTGATCGTTGCTACCAATaGCCCTGTTTCAAAGTTACATGTGTCAAAAATTCCAGGTACCTT | + |
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Preference number: 1 (lower is better) Translates to: HCDLTKCDKADRCYQ*PCFKVTCVKNSRYL Trigger: AAGGTACCTGGAATTTTTGACACATGTAACTTTGAAACAGGGTCATTGGTAGCAACGATCAGCTTTATCACATTTAGTTAAATCACAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| 3UTR-3UTR CCA 90 bp | ACGGAGTCTGATGCCAGGTGGGGCCCTCCCTCACTGGGTCATGGGCCTGCAGCAGACAGGAGTCAAACATaGCTGGCAGGCATCAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: TESDARWGPPSLGHGPAADRSQT*LAGIRS Trigger: GCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTC...TGCTGCAGGCCCATGACCCAGTGAGGGAGGGCCCCACCTGGCATCAGACTCCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR-3UTR CCA 90 bp | TGGGGCCCTCCCTCACTGGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCCTGACGGTCCGGAAGCCCTaGGCTGTGTTGAACTCATTA | + |
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Preference number: 2 (lower is better) Translates to: WGPPSLGHGPAAEQQMPLTVRKP*AVLNSL Trigger: TAATGAGTTCAACACAGCCCAGGGCTTCCGGACCGT...CAGGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGTGAGGGAGGGCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR-3UTR GCA 90 bp | AGTCAAACATGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGCCAGGTGGGGCACTGGGTCATGGGCCTaGAGCAGAGCAGCAAATGCC | + |
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Preference number: 2 (lower is better) Translates to: SQTWLAGIRSTESDARWGTGSWA*SRAANA Trigger: GGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGT...GCCCCACCTGGCATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR-3UTR CCA 90 bp | GCTCACACACCTGCACTGTTCTTGTATGGCCCACTCCTCAGAGTTCACACACCAGAGTCTGATGCCAGGTaGGGCCCTCCCTCACTGGGT | + |
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Preference number: 2 (lower is better) Translates to: AHTPALFLYGPLLRVHTPESDAR*GPPSLG Trigger: ACCCAGTGAGGGAGGGCCCCACCTGGCATCAGACTC...TGGTGTGTGAACTCTGAGGAGTGGGCCATACAAGAACAGTGCAGGTGTGTGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| 3UTR-3UTR GCA 90 bp | GGAAGGCTGGCTGTGATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGACTGGGTCATGGGCCTaGAGCAGAGCAGCAAATGCC | + |
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Preference number: 2 (lower is better) Translates to: GRLAVIGQESNMAGRHQKTGSWA*SRAANA Trigger: GGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGT...CTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAGCCTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR-3UTR CCA 90 bp | CACGCTCACACACCTGCACTGTTCTTGTATGGCCCACTCCTCAGAGTTCACACAGGAGTCAAACATGGCTaGCAGGCATCAGAAGCACGG | + |
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Preference number: 2 (lower is better) Translates to: HAHTPALFLYGPLLRVHTGVKHG*QASEAR Trigger: CCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCC...TGTGTGAACTCTGAGGAGTGGGCCATACAAGAACAGTGCAGGTGTGTGAGCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| 3UTR-3UTR CCA 90 bp | AGGTGGACAGATGGACACCAAGCGTGTGTTCTTTCCTCTCCTTCTGAATCTGTTCTCCAGGGCATACTGTaGGGGCAGTGGCTTCCCCAG | + |
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Preference number: 2 (lower is better) Translates to: RWTDGHQACVLSSPSESVLQGIL*GQWLPQ Trigger: CTGGGGAAGCCACTGCCCCCACAGTATGCCCTGGAG...AACAGATTCAGAAGGAGAGGAAAGAACACACGCTTGGTGTCCATCTGTCCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGGCTGTGATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGCACGGTGCACTGTTCTTGTATaGCCCACTCCTCAGAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: AGCDWTGVKHGWQASEARCTVLV*PTPQSS Trigger: TGAACTCTGAGGAGTGGGCCATACAAGAACAGTGCA...CCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| 3UTR-3UTR CCA 90 bp | GCTGTGCTCACAGCAGGATACATGTCCAGTTCTCCTCCACCTGCTCAAAAGGTAATACTGTGGGGGCAGTaGCTTCCCCAGCTTCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: AVLTAGYMSSSPPPAQKVILWGQ*LPQLLL Trigger: AAGGAGAAGCTGGGGAAGCCACTGCCCCCACAGTAT...TACCTTTTGAGCAGGTGGAGGAGAACTGGACATGTATCCTGCTGTGAGCACAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR-3UTR CCA 90 bp | AGTGTTCCATGTCCATGTGTGGCCAGGGAACTGTTTCTGTGTCAGATAGGGCAGGACAGGAGTCAAACATaGCTGGCAGGCATCAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: SVPCPCVARELFLCQIGQDRSQT*LAGIRS Trigger: GCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTC...CTGCCCTATCTGACACAGAAACAGTTCCCTGGCCACACATGGACATGGAACACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| 3UTR-3UTR CCA 90 bp | GCTGGCTGTGATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGCACGGGTCTGTGCAGGTATTTaGAGACCTCCTTGTGTTGAA | + |
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Preference number: 2 (lower is better) Translates to: AGCDWTGVKHGWQASEARVCAGI*RPPCVE Trigger: TTCAACACAAGGAGGTCTCCAAATACCTGCACAGAC...CCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR-3UTR CCA 90 bp | TCCCAGGAGCTCACTCGGGAACCATCATTTTTCATAAAACATGGGTACCACAGCGGAGTCAAACATGGCTaGCAGGCATCAGAAGCACGG | + |
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Preference number: 2 (lower is better) Translates to: SQELTREPSFFIKHGYHSGVKHG*QASEAR Trigger: CCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCC...GCTGTGGTACCCATGTTTTATGAAAAATGATGGTTCCCGAGTGAGCTCCTGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR CAA 90 bp | GGCTTTTCTGAGCTGTCTGTGCAGGTATTTGGAGACCTCCTTGTGTaGAAAGTCATAATACTTTGTCCAGTAGATTCGAAGATGCTGATA | + |
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Preference number: 2 (lower is better) Translates to: GFSELSVQVFGDLLV*KVIILCPVDSKMLI Trigger: TATCAGCATCTTCGAATCTACTGGACAAAGTATTATGACTTTCAACACAAGGAGGTCTCCAAATACCTGCACAGACAGCTCAGAAAAGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR CCA 72 bp | GCACGGAGTCTGATGCCAGGTGGGGCCCTCCCTCACTaGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCC | + |
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Preference number: 3 (lower is better) Translates to: ARSLMPGGALPH*VMGLQQSSKCP Trigger: GGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGTGAGGGAGGGCCCCACCTGGCATCAGACTCCGTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR TCA 72 bp | TGGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCCTaGCCAGCAGTCTCCTGGGCAGGTGCTGCTGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: WVMGLQQSSKCP*PAVSWAGAAVL Trigger: GAGCACAGCAGCACCTGCCCAGGAGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR TCA 72 bp | TCAAACATGGCTGGCAGGCATCAGAAGCACGGAGTCTaGTGCCAGGTGGGGCCCTCCCTCACTGGGTCATGG | + |
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Preference number: 3 (lower is better) Translates to: SNMAGRHQKHGV*CQVGPSLTGSW Trigger: CCATGACCCAGTGAGGGAGGGCCCCACCTGGCATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR GCA 72 bp | GCCCCTGACCAGCAGTCTCCTGGGCAGGTGCTGCTGTaGTCACAGCAGGATACATGTCCAGTTCTCCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: APDQQSPGQVLL*SQQDTCPVLLH Trigger: GTGGAGGAGAACTGGACATGTATCCTGCTGTGAGCACAGCAGCACCTGCCCAGGAGACTGCTGGTCAGGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR TCA 72 bp | CCCCAGCCTGCATGTTGTAGCCACTCAAGGGCACCCTaGGAGCACAGGCCACAGTCTCAGTGTTCCATGTCC | + |
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Preference number: 3 (lower is better) Translates to: PQPACCSHSRAP*EHRPQSQCSMS Trigger: GGACATGGAACACTGAGACTGTGGCCTGTGCTCTCAGGGTGCCCTTGAGTGGCTACAACATGCAGGCTGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| 3UTR GCA 72 bp | CAAATGCCCCTGACCAGCAGTCTCCTGGGCAGGTGCTaGTGTGCTCACAGCAGGATACATGTCCAGTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: QMPLTSSLLGRC*CAHSRIHVQFS Trigger: GGAGAACTGGACATGTATCCTGCTGTGAGCACAGCAGCACCTGCCCAGGAGACTGCTGGTCAGGGGCATTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR-3UTR CAA 90 bp | ACGGAGTCTGATGCCAGGTGGGGCCCTCCCTCACTGGGTCATGGGCCTGCAGCAACCTGCTGTGGTTTATaGTTGATCAGACTTTGTCAG | + |
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Preference number: 3 (lower is better) Translates to: TESDARWGPPSLGHGPAATCCGL*LIRLCQ Trigger: CTGACAAAGTCTGATCAACAATAAACCACAGCAGGT...TGCTGCAGGCCCATGACCCAGTGAGGGAGGGCCCCACCTGGCATCAGACTCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR CCA 72 bp | AAGGCTGGCTGTGATTGGACAGGAGTCAAACATGGCTaGCAGGCATCAGAAGCACGGAGTCTGATGCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: KAGCDWTGVKHG*QASEARSLMPG Trigger: ACCTGGCATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR-3UTR CAA 90 bp | CAGTTCTCCTCCACCTGCTCAAAAGGTACAGGAACCACCGTCGGCACATCCCAGCTCCTTCTGAATCTGTaGAGGAAGGCTGGCTGTGAT | + |
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Preference number: 3 (lower is better) Translates to: QFSSTCSKGTGTTVGTSQLLLNL*RKAGCD Trigger: ATCACAGCCAGCCTTCCTCAACAGATTCAGAAGGAG...CTGGGATGTGCCGACGGTGGTTCCTGTACCTTTTGAGCAGGTGGAGGAGAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR-3UTR CAA 90 bp | CAGTTCTCCTCCACCTGCTCAAAAGGTACAGGAACCACCGTCGGCACATCCCAGAAGCCCTGGGCTGTGTaGAACTCATTACATCCATTC | + |
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Preference number: 3 (lower is better) Translates to: QFSSTCSKGTGTTVGTSQKPWAV*NSLHPF Trigger: GAATGGATGTAATGAGTTCAACACAGCCCAGGGCTT...CTGGGATGTGCCGACGGTGGTTCCTGTACCTTTTGAGCAGGTGGAGGAGAACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| 3UTR TCA 72 bp | TCCTCTCCTTCTGAATCTGTTGAGGAAGGCTGGCTGTaGTTGGACAGGAGTCAAACATGGCTGGCAGGCATC | + |
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Preference number: 3 (lower is better) Translates to: SSPSESVEEGWL*LDRSQTWLAGI Trigger: GATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAGCCTTCCTCAACAGATTCAGAAGGAGAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR TCA 72 bp | TTCTTGTATGGCCCACTCCTCAGAGTTCACACACCATaGCGGCACCTGCTGTGGTTTATTGTTGATCAGACT | + |
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Preference number: 3 (lower is better) Translates to: FLYGPLLRVHTP*RHLLWFIVDQT Trigger: AGTCTGATCAACAATAAACCACAGCAGGTGCCGTCATGGTGTGTGAACTCTGAGGAGTGGGCCATACAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| 3UTR TCA 72 bp | TCACACACCATGACGGCACCTGCTGTGGTTTATTGTTaGTCAGACTTTGTCAGACAGAACCTTCCAACAGGT | + |
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Preference number: 3 (lower is better) Translates to: SHTMTAPAVVYC*SDFVRQNLPTG Trigger: ACCTGTTGGAAGGTTCTGTCTGACAAAGTCTGATCAACAATAAACCACAGCAGGTGCCGTCATGGTGTGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| 3UTR CCA 72 bp | TTGATCAGACTTTGTCAGACAGAACCTTCCAACAGGTaGACAGATGGACACCAAGCGTGTGTTCTTTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: LIRLCQTEPSNR*TDGHQACVLSS Trigger: AGAGGAAAGAACACACGCTTGGTGTCCATCTGTCCACCTGTTGGAAGGTTCTGTCTGACAAAGTCTGATCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR TCA 72 bp | TTAACTAAATGTGATAAAGCTGATCGTTGCTACCAATaGCCCTGTTTCAAAGTTACATGTGTCAAAAATTCC | + |
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Preference number: 3 (lower is better) Translates to: LTKCDKADRCYQ*PCFKVTCVKNS Trigger: GGAATTTTTGACACATGTAACTTTGAAACAGGGTCATTGGTAGCAACGATCAGCTTTATCACATTTAGTTAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CCA 90 bp | ACGGAGTCTGATGCCAGGTGGGGCCCTCCCTCACTGGGTCATGGGCCTGCAGCAGTCCAGCGTCCAGGCTaGGATGCTCCTGAGTCCGTG | + |
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Preference number: 4 (lower is better) Translates to: TESDARWGPPSLGHGPAAVQRPG*DAPESV Trigger: CACGGACTCAGGAGCATCCCAGCCTGGACGCTGGAC...TGCTGCAGGCCCATGACCCAGTGAGGGAGGGCCCCACCTGGCATCAGACTCCGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR TCA 90 bp | GGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCCTGACCAGCAGTCTCCTGGGTGTGGTGCCTTTGCCTaGGGAGCCACCCTTCACCAC | + |
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Preference number: 4 (lower is better) Translates to: GSWACSRAANAPDQQSPGCGAFA*GATLHH Trigger: GTGGTGAAGGGTGGCTCCTCAGGCAAAGGCACCACA...CCCAGGAGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR TCA 90 bp | TGGGGCCCTCCCTCACTGGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCCTGGGCGTTGGGCCACCATaGACTCTGGACCTCAAACTT | + |
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Preference number: 4 (lower is better) Translates to: WGPPSLGHGPAAEQQMPLGVGPP*TLDLKL Trigger: AAGTTTGAGGTCCAGAGTTCATGGTGGCCCAACGCC...CAGGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGTGAGGGAGGGCCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CCA 90 bp | GCAGCAAATGCCCCTGACCAGCAGTCTCCTGGGCAGGTGCTGCTGTGCTCACAGCACCCTTCACCACCTTaGAGACCCTCACTGGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: AANAPDQQSPGQVLLCSQHPSPP*RPSLGG Trigger: CCCACCCAGTGAGGGTCTCCAAGGTGGTGAAGGGTG...CTGTGAGCACAGCAGCACCTGCCCAGGAGACTGCTGGTCAGGGGCATTTGCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| CDS-3UTR TCA 90 bp | TGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGCCAGGTGGGGCCCTCCCTCAGGCGTTGGGCCACCATaGACTCTGGACCTCAAACTT | + |
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Preference number: 4 (lower is better) Translates to: WLAGIRSTESDARWGPPSGVGPP*TLDLKL Trigger: AAGTTTGAGGTCCAGAGTTCATGGTGGCCCAACGCC...TGAGGGAGGGCCCCACCTGGCATCAGACTCCGTGCTTCTGATGCCTGCCAGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR TCA 90 bp | AGTCAAACATGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGCCAGGTGGGGCTACACTCTGTACAGATaGAGCCCACAGTGGCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: SQTWLAGIRSTESDARWGYTLYR*SPQWLG Trigger: GCCCAGCCACTGTGGGCTTCATCTGTACAGAGTGTA...GCCCCACCTGGCATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| CDS-3UTR CCA 90 bp | GATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGGTCCAGCGTCCAGGCTaGGATGCTCCTGAGTCCGTG | + |
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Preference number: 4 (lower is better) Translates to: DWTGVKHGWQASEARSLMVQRPG*DAPESV Trigger: CACGGACTCAGGAGCATCCCAGCCTGGACGCTGGAC...CATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CCA 90 bp | AGTGTTCCATGTCCATGTGTGGCCAGGGAACTGTTTCTGTGTCAGATAGGGCAGCTCCAGGGCATACTGTaGGGGCAGTGGCTTCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SVPCPCVARELFLCQIGQLQGIL*GQWLPQ Trigger: CTGGGGAAGCCACTGCCCCCACAGTATGCCCTGGAG...CTGCCCTATCTGACACAGAAACAGTTCCCTGGCCACACATGGACATGGAACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CCA 90 bp | AGTCAAACATGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGCCAGGTGGGGCACGGTCCGGAAGCCCTaGGCTGTGTTGAACTCATTA | + |
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Preference number: 4 (lower is better) Translates to: SQTWLAGIRSTESDARWGTVRKP*AVLNSL Trigger: TAATGAGTTCAACACAGCCCAGGGCTTCCGGACCGT...GCCCCACCTGGCATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CCA 90 bp | GCCTGCAGCAGAGCAGCAAATGCCCCTGACCAGCAGTCTCCTGGGCAGGTGCTGGTCTGTGCAGGTATTTaGAGACCTCCTTGTGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: ACSRAANAPDQQSPGQVLVCAGI*RPPCVE Trigger: TTCAACACAAGGAGGTCTCCAAATACCTGCACAGAC...CAGCACCTGCCCAGGAGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR TCA 90 bp | GCTGTGCTCACAGCAGGATACATGTCCAGTTCTCCTCCACCTGCTCAAAAGGTATGTGGTGCCTTTGCCTaGGGAGCCACCCTTCACCAC | + |
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Preference number: 4 (lower is better) Translates to: AVLTAGYMSSSPPPAQKVCGAFA*GATLHH Trigger: GTGGTGAAGGGTGGCTCCTCAGGCAAAGGCACCACA...TACCTTTTGAGCAGGTGGAGGAGAACTGGACATGTATCCTGCTGTGAGCACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| CDS-3UTR CCA 90 bp | GGAAGGCTGGCTGTGATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGATACTGTGGGGGCAGTaGCTTCCCCAGCTTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: GRLAVIGQESNMAGRHQKILWGQ*LPQLLL Trigger: AAGGAGAAGCTGGGGAAGCCACTGCCCCCACAGTAT...CTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAGCCTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CCA 90 bp | CCAACAGGTGGACAGATGGACACCAAGCGTGTGTTCTTTCCTCTCCTTCTGAATCCGCCTCCAGCCCTCTaGGTTCCCACCAGCCACATT | + |
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Preference number: 4 (lower is better) Translates to: PTGGQMDTKRVFFPLLLNPPPAL*VPTSHI Trigger: AATGTGGCTGGTGGGAACCCAGAGGGCTGGAGGCGG...ATTCAGAAGGAGAGGAAAGAACACACGCTTGGTGTCCATCTGTCCACCTGTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CCA 90 bp | CAGATGGACACCAAGCGTGTGTTCTTTCCTCTCCTTCTGAATCTGTTGAGGAAGCACCCTTCACCACCTTaGAGACCCTCACTGGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: QMDTKRVFFPLLLNLLRKHPSPP*RPSLGG Trigger: CCCACCCAGTGAGGGTCTCCAAGGTGGTGAAGGGTG...CTTCCTCAACAGATTCAGAAGGAGAGGAAAGAACACACGCTTGGTGTCCATCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CCA 90 bp | ACTCAAGGGCACCCTGAGAGCACAGGCCACAGTCTCAGTGTTCCATGTCCATGTACTCTTCAGCTTGGTTaGGCGCTGCTTCAGGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: TQGHPESTGHSLSVPCPCTLQLG*ALLQEV Trigger: AACTTCCTGAAGCAGCGCCCAACCAAGCTGAAGAGT...ACATGGACATGGAACACTGAGACTGTGGCCTGTGCTCTCAGGGTGCCCTTGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CCA 90 bp | GCCTGCAGCAGAGCAGCAAATGCCCCTGACCAGCAGTCTCCTGGGCAGGTGCTGATTTTTCATAAAACATaGGTACCACAGCCACACATC | + |
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Preference number: 4 (lower is better) Translates to: ACSRAANAPDQQSPGQVLIFHKT*VPQPHI Trigger: GATGTGTGGCTGTGGTACCCATGTTTTATGAAAAAT...CAGCACCTGCCCAGGAGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CCA 90 bp | GATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGACTCTTCAGCTTGGTTaGGCGCTGCTTCAGGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: DWTGVKHGWQASEARSLMTLQLG*ALLQEV Trigger: AACTTCCTGAAGCAGCGCCCAACCAAGCTGAAGAGT...CATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR GCA 90 bp | ACACACCTGCACTGTTCTTGTATGGCCCACTCCTCAGAGTTCACACACCATGACCAGTTCTCCTCCACCTaGTCAAAAGGTACAGGAACC | + |
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Preference number: 4 (lower is better) Translates to: THLHCSCMAHSSEFTHHDQFSST*SKGTGT Trigger: GGTTCCTGTACCTTTTGAGCAGGTGGAGGAGAACTG...GTCATGGTGTGTGAACTCTGAGGAGTGGGCCATACAAGAACAGTGCAGGTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR TCA 90 bp | CAGATGGACACCAAGCGTGTGTTCTTTCCTCTCCTTCTGAATCTGTTGAGGAAGCAGGCCTGGCTTTTCTaGGCTGTCTGTGCAGGTATT | + |
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Preference number: 4 (lower is better) Translates to: QMDTKRVFFPLLLNLLRKQAWLF*AVCAGI Trigger: AATACCTGCACAGACAGCTCAGAAAAGCCAGGCCTG...CTTCCTCAACAGATTCAGAAGGAGAGGAAAGAACACACGCTTGGTGTCCATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CCA 90 bp | CCAACAGGTGGACAGATGGACACCAAGCGTGTGTTCTTTCCTCTCCTTCTGAATCAGGACATCAAAGGCTaGAAGCACATCAAACTCCAC | + |
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Preference number: 4 (lower is better) Translates to: PTGGQMDTKRVFFPLLLNQDIKG*KHIKLH Trigger: GTGGAGTTTGATGTGCTTCCAGCCTTTGATGTCCTG...ATTCAGAAGGAGAGGAAAGAACACACGCTTGGTGTCCATCTGTCCACCTGTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| 3UTR CAA 72 bp | GAGTTCACACACCATGACGGCACCTGCTGTGGTTTATaGTTGATCAGACTTTGTCAGACAGAACCTTCCAAC | + |
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Preference number: 4 (lower is better) Translates to: EFTHHDGTCCGL*LIRLCQTEPSN Trigger: GTTGGAAGGTTCTGTCTGACAAAGTCTGATCAACAATAAACCACAGCAGGTGCCGTCATGGTGTGTGAACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CAA 90 bp | GCCTGCAGCAGAGCAGCAAATGCCCCTGACCAGCAGTCTCCTGGGCAGGTGCTGCTCAGAGACCGGGCGTaGGGCCACCATGAACTCTGG | + |
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Preference number: 5 (lower is better) Translates to: ACSRAANAPDQQSPGQVLLRDRA*GHHELW Trigger: CCAGAGTTCATGGTGGCCCAACGCCCGGTCTCTGAG...CAGCACCTGCCCAGGAGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | TCACTGGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCCTGACCAGCAGTCTCGCGTCTGACCTGCCCTaGAGTGTGGTGCCTTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: SLGHGPAAEQQMPLTSSLASDLP*SVVPLP Trigger: AGGCAAAGGCACCACACTCAAGGGCAGGTCAGACGC...GAGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | AGTCAAACATGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGCCAGGTGGGGCCTCAGAGACCGGGCGTaGGGCCACCATGAACTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SQTWLAGIRSTESDARWGLRDRA*GHHELW Trigger: CCAGAGTTCATGGTGGCCCAACGCCCGGTCTCTGAG...GCCCCACCTGGCATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | TGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGCCAGGTGGGGCCCTCCCTCAATGAGACTCTTCAGCTaGGTTGGGCGCTGCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: WLAGIRSTESDARWGPPSMRLFS*VGRCFR Trigger: CCTGAAGCAGCGCCCAACCAAGCTGAAGAGTCTCAT...TGAGGGAGGGCCCCACCTGGCATCAGACTCCGTGCTTCTGATGCCTGCCAGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | TCACTGGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCCTGACCAGCAGTCTCTGGGTGGGCAGCACCTaGGAAGCATCTCTCCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: SLGHGPAAEQQMPLTSSLWVGST*EASLLQ Trigger: CTGAAGGAGAGATGCTTCCAAGGTGCTGCCCACCCA...GAGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | GCTGGCTGTGATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGCACGGGCGTCTGACCTGCCCTaGAGTGTGGTGCCTTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: AGCDWTGVKHGWQASEARASDLP*SVVPLP Trigger: AGGCAAAGGCACCACACTCAAGGGCAGGTCAGACGC...CCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | CTCACTGGGTCATGGGCCTGCAGCAGAGCAGCAAATGCCCCTGACCAGCAGTCTGACTCTTCAGCTTGGTaGGGCGCTGCTTCAGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: LTGSWACSRAANAPDQQSDSSAW*GAASGS Trigger: ACTTCCTGAAGCAGCGCCCAACCAAGCTGAAGAGTC...AGACTGCTGGTCAGGGGCATTTGCTGCTCTGCTGCAGGCCCATGACCCAGTGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | GCCTCTTCAGCCAACCGCCTCCAGCCCTCTGGGTTCCCACCAGCCACATTCCCTTGTTTCTTAATTTCCTaGATGAACTCTCCCCGTCGG | + |
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Preference number: 5 (lower is better) Translates to: ASSANRLQPSGFPPATFPCFLIS*MNSPRR Trigger: CCGACGGGGAGAGTTCATCAAGGAAATTAAGAAACA...AGGGAATGTGGCTGGTGGGAACCCAGAGGGCTGGAGGCGGTTGGCTGAAGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | CAGTGTTCCATGTCCATGTGTGGCCAGGGAACTGTTTCTGTGTCAGATAGGGCATGGGTGGGCAGCACCTaGGAAGCATCTCTCCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: QCSMSMCGQGTVSVSDRAWVGST*EASLLQ Trigger: CTGAAGGAGAGATGCTTCCAAGGTGCTGCCCACCCA...TGCCCTATCTGACACAGAAACAGTTCCCTGGCCACACATGGACATGGAACACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CAA 90 bp | ACACACCTGCACTGTTCTTGTATGGCCCACTCCTCAGAGTTCACACACCATGACTTGAGTGTGGTGCCTTaGCCTGAGGAGCCACCCTTC | + |
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Preference number: 5 (lower is better) Translates to: THLHCSCMAHSSEFTHHDLSVVP*PEEPPF Trigger: GAAGGGTGGCTCCTCAGGCAAAGGCACCACACTCAA...GTCATGGTGTGTGAACTCTGAGGAGTGGGCCATACAAGAACAGTGCAGGTGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CAA 90 bp | GATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGCACGGAGTCTGATGGACTCTTCAGCTTGGTaGGGCGCTGCTTCAGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: DWTGVKHGWQASEARSLMDSSAW*GAASGS Trigger: ACTTCCTGAAGCAGCGCCCAACCAAGCTGAAGAGTC...CATCAGACTCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | CTGGCTGTGATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGCACGGAACATTGACGGCTGATTaGACATCAGCACCAAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: LAVIGQESNMAGRHQKHGTLTAD*TSAPKV Trigger: CACCTTTGGTGCTGATGTCAAATCAGCCGTCAATGT...TCCGTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | AGGCTGGCTGTGATTGGACAGGAGTCAAACATGGCTGGCAGGCATCAGAAGCACACATTGACGGCTGATTaGACATCAGCACCAAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: RLAVIGQESNMAGRHQKHTLTAD*TSAPKV Trigger: CACCTTTGGTGCTGATGTCAAATCAGCCGTCAATGT...GTGCTTCTGATGCCTGCCAGCCATGTTTGACTCCTGTCCAATCACAGCCAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | ACTCAAGGGCACCCTGAGAGCACAGGCCACAGTCTCAGTGTTCCATGTCCATGTAAGCCCTGGGCTGTGTaGAACTCATTACATCCATTC | + |
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Preference number: 5 (lower is better) Translates to: TQGHPESTGHSLSVPCPCKPWAV*NSLHPF Trigger: GAATGGATGTAATGAGTTCAACACAGCCCAGGGCTT...ACATGGACATGGAACACTGAGACTGTGGCCTGTGCTCTCAGGGTGCCCTTGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CAA 90 bp | CCAGGAGCTCACTCGGGAACCATCATTTTTCATAAAACATGGGTACCACAGCCAATGAGACTCTTCAGCTaGGTTGGGCGCTGCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: PGAHSGTIIFHKTWVPQPMRLFS*VGRCFR Trigger: CCTGAAGCAGCGCCCAACCAAGCTGAAGAGTCTCAT...TGGCTGTGGTACCCATGTTTTATGAAAAATGATGGTTCCCGAGTGAGCTCCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162096.8 |
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| CDS-3UTR CAA 90 bp | CACGCTCACACACCTGCACTGTTCTTGTATGGCCCACTCCTCAGAGTTCACACATGTTTCTTAATTTCCTaGATGAACTCTCCCCGTCGG | + |
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Preference number: 5 (lower is better) Translates to: HAHTPALFLYGPLLRVHTCFLIS*MNSPRR Trigger: CCGACGGGGAGAGTTCATCAAGGAAATTAAGAAACA...TGTGTGAACTCTGAGGAGTGGGCCATACAAGAACAGTGCAGGTGTGTGAGCGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS-3UTR CAA 90 bp | ACACACCTGCACTGTTCTTGTATGGCCCACTCCTCAGAGTTCACACACCATGACCTTCTCCTTACACAGTaGGTACCAGTGTTTGACCAG | + |
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Preference number: 5 (lower is better) Translates to: THLHCSCMAHSSEFTHHDLLLTQ*VPVFDQ Trigger: CTGGTCAAACACTGGTACCAACTGTGTAAGGAGAAG...GTCATGGTGTGTGAACTCTGAGGAGTGGGCCATACAAGAACAGTGCAGGTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086368.12 |
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| CDS CAA 90 bp | AACACCACCAGGTCAGCGTCTGACCTGCCCTTGAGTGTGGTGCCTTaGCCTGAGGAGCCACCCTTCACCACCTTGGAGACCCTCACTGGG | + |
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Preference number: 6 (lower is better) Translates to: NTTRSASDLPLSVVP*PEEPPFTTLETLTG Trigger: CCCAGTGAGGGTCTCCAAGGTGGTGAAGGGTGGCTCCTCAGGCAAAGGCACCACACTCAAGGGCAGGTCAGACGCTGACCTGGTGGTGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS CAA 72 bp | AGGTCAGCGTCTGACCTGCCCTTGAGTGTGGTGCCTTaGCCTGAGGAGCCACCCTTCACCACCTTGGAGACC | + |
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Preference number: 6 (lower is better) Translates to: RSASDLPLSVVP*PEEPPFTTLET Trigger: GGTCTCCAAGGTGGTGAAGGGTGGCTCCTCAGGCAAAGGCACCACACTCAAGGGCAGGTCAGACGCTGACCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS TCA 72 bp | TTAATTTCCTTGATGAACTCTCCCCGTCGGTTTAACTaGTCCTCAAAGCTGGTGAGATTGTTAAGGAACACC | + |
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Preference number: 6 (lower is better) Translates to: LISLMNSPRRFN*SSKLVRLLRNT Trigger: GGTGTTCCTTAACAATCTCACCAGCTTTGAGGATCAGTTAAACCGACGGGGAGAGTTCATCAAGGAAATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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| CDS TCA 72 bp | TGGACCTCAAACTTGACTCTAAAACGTCTCTCATGCTaGACCTCGTACAGCTGTTTCTTAATTTCCTTGATG | + |
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Preference number: 6 (lower is better) Translates to: WTSNLTLKRLSC*TSYSCFLISLM Trigger: CATCAAGGAAATTAAGAAACAGCTGTACGAGGTTCAGCATGAGAGACGTTTTAGAGTCAAGTTTGAGGTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086368.12 ENSMUST00000162096.8 |
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