Pregenerated sensors for OAS1F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053765Ensembl transcript IDs: ENSMUST00000057814.5, ENSMUST00000123431.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCCACTTGTACTTGGTGACCAGTTCCAAGACAGTTCGGAAGCCCTaGGCTGTGTTGAATTCGCAGTCTCTACTCCCACTTTCCCAGGCG | + |
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Preference number: 1 (lower is better) Translates to: SHLYLVTSSKTVRKP*AVLNSQSLLPLSQA Trigger: CGCCTGGGAAAGTGGGAGTAGAGACTGCGAATTCAACACAGCCCAGGGCTTCCGAACTGTCTTGGAACTGGTCACCAAGTACAAGTGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR TCA 90 bp | TTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCTaGCTCTTGAGCATCCTGGCAGGTGCTTTGGTGCTCATAGAAGGA | + |
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Preference number: 1 (lower is better) Translates to: FSGSRACSRARISYP*LLSILAGALVLIEG Trigger: TCCTTCTATGAGCACCAAAGCACCTGCCAGGATGCTCAAGAGTCAGGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR CCA 90 bp | GATTGGGGCCGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGACTCCAGGGCATACTGTaGGGGCAGCGGCTTCCCCAG | + |
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Preference number: 2 (lower is better) Translates to: DWGREQLSPFSGSRACSRLQGIL*GQRLPQ Trigger: CTGGGGAAGCCGCTGCCCCCACAGTATGCCCTGGAG...TCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACGGCCCCAATC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR TCA 90 bp | GCCCACGAGGCACGTATCACAGTTCCTAAAGCAGGAGGACTGCAGCCAGATGGCGACCGGATGCAGGGGTaGGAAGGCAGGGGTCAGAAG | + |
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Preference number: 2 (lower is better) Translates to: AHEARITVPKAGGLQPDGDRMQG*EGRGQK Trigger: CTTCTGACCCCTGCCTTCTCACCCCTGCATCCGGTC...GCCATCTGGCTGCAGTCCTCCTGCTTTAGGAACTGTGATACGTGCCTCGTGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR GCA 90 bp | GCCGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATGTGATAGGACCGGATaGAGGGGTGAGAAGGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: AVSSFPPSLVQGPAAEQGCDRTG*RGEKAG Trigger: CCCTGCCTTCTCACCCCTGCATCCGGTCCTATCACA...TCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCACGAGGCACGTATCACAGTTCCTAAAGCAGGAGGACTGCAGCCAGATGGCTGGACCCTCCCTGATTaGGGCCGTGAGCAGCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: AHEARITVPKAGGLQPDGWTLPD*GREQLS Trigger: GGAAAGCTGCTCACGGCCCCAATCAGGGAGGGTCCA...GCCATCTGGCTGCAGTCCTCCTGCTTTAGGAACTGTGATACGTGCCTCGTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR TCA 90 bp | CTGATTGGGGCCGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCACATATCCCTGACTCTTaGGCATCCTGGCAGGTGCTT | + |
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Preference number: 2 (lower is better) Translates to: LIGAVSSFPPSLVQGPAAHIPDS*ASWQVL Trigger: AAGCACCTGCCAGGATGCTCAAGAGTCAGGGATATG...TGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACGGCCCCAATCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR-3UTR TCA 90 bp | GATTGGGGCCGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGACATATCCCTGACTCTTaGGCATCCTGGCAGGTGCTT | + |
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Preference number: 2 (lower is better) Translates to: DWGREQLSPFSGSRACSRHIPDS*ASWQVL Trigger: AAGCACCTGCCAGGATGCTCAAGAGTCAGGGATATG...TCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACGGCCCCAATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAACCTCCCAACAGGTGGACAGGTGGAAGTCAAGCTTGAGTTCCTGCCTCCCCAGGGGTCAGAAGCCTaGAGTCTGATCACAGGTTGG | + |
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Preference number: 2 (lower is better) Translates to: QNLPTGGQVEVKLEFLPPQGSEA*SLITGW Trigger: CCAACCTGTGATCAGACTCCAGGCTTCTGACCCCTG...GGGAGGCAGGAACTCAAGCTTGACTTCCACCTGTCCACCTGTTGGGAGGTTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGCTATCTGTGATAGGACCGGATGCAGGGGTGAGAAGGCAGGGGTCAGAAAGCCACGTTCCTTGTTaGGTCAGCAGGGTCCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: RRLSVIGPDAGVRRQGSESHVPC*VSRVQD Trigger: ATCCTGGACCCTGCTGACCCAACAAGGAACGTGGCT...TTCTGACCCCTGCCTTCTCACCCCTGCATCCGGTCCTATCACAGATAGCCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGTTCCTAAAGCAGGAGGACTGCAGCCAGATGGCAGCTTCTTTTGCCAACAGGCTTTCCCCCTTCTCTaGTTCAAGGGCCTGCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: TVPKAGGLQPDGSFFCQQAFPLL*FKGLQQ Trigger: CTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGC...CTGTTGGCAAAAGAAGCTGCCATCTGGCTGCAGTCCTCCTGCTTTAGGAACTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCTCAGGGGTCAGAAGCCTaGAGTCTGATCACAGGTTGG | + |
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Preference number: 2 (lower is better) Translates to: FPPSLVQGPAAEQGSHIPQGSEA*SLITGW Trigger: CCAACCTGTGATCAGACTCCAGGCTTCTGACCCCTG...AGGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR CAA 90 bp | TACTTGGTGACCAGTTCCAAGACAGTTCGGAAGCCCTGGGCTGTGTaGAATTCGCAGTCTCTACTCCCACTTTCCCAGGCGTACACTGTG | + |
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Preference number: 2 (lower is better) Translates to: YLVTSSKTVRKPWAV*NSQSLLPLSQAYTV Trigger: CACAGTGTACGCCTGGGAAAGTGGGAGTAGAGACTGCGAATTCAACACAGCCCAGGGCTTCCGAACTGTCTTGGAACTGGTCACCAAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR TCA 90 bp | AGAAGGCTATCTGTGATAGGACCGGATGCAGGGGTGAGAAGGCAGGGGTCAGAAAGGATCTCATATCCCTaGCTCTTGAGCATCCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: RRLSVIGPDAGVRRQGSERISYP*LLSILA Trigger: TGCCAGGATGCTCAAGAGTCAGGGATATGAGATCCT...TTCTGACCCCTGCCTTCTCACCCCTGCATCCGGTCCTATCACAGATAGCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCTCTAAAGCAGGAGGACTaGAGCCAGATGGCAGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: FPPSLVQGPAAEQGSHIPLKQED*SQMAAS Trigger: AGAAGCTGCCATCTGGCTGCAGTCCTCCTGCTTTAG...AGGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATGAGCATCCTGGCAGGTaGTTTGGTGCTCATAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: QLSPFSGSRACSRARISYEHPGR*FGAHRR Trigger: CCTTCTATGAGCACCAAAGCACCTGCCAGGATGCTC...ATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR CCA 90 bp | AAGAAGGCTATCTGTGATAGGACCGGATGCAGGGGTGAGAAGGCAGGGGTCAGAGGAGGACACTGTTGGTaGATAAGGCAGATAAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: KKAICDRTGCRGEKAGVRGGHCW*IRQIKQ Trigger: CTGCTTTATCTGCCTTATCCACCAACAGTGTCCTCC...TCTGACCCCTGCCTTCTCACCCCTGCATCCGGTCCTATCACAGATAGCCTTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR-3UTR TCA 90 bp | CTCTCTGTGATTTATTATTGTGCATCAGACATTGGACAGAACCTCCCAACAGGTGACCGGATGCAGGGGTaGGAAGGCAGGGGTCAGAAG | + |
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Preference number: 2 (lower is better) Translates to: LSVIYYCASDIGQNLPTGDRMQG*EGRGQK Trigger: CTTCTGACCCCTGCCTTCTCACCCCTGCATCCGGTC...ACCTGTTGGGAGGTTCTGTCCAATGTCTGATGCACAATAATAAATCACAGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| 3UTR-3UTR CCA 90 bp | TTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCTGGAGGACACTGTTGGTaGATAAGGCAGATAAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: FPPSLVQGPAAEQGSHIPGGHCW*IRQIKQ Trigger: CTGCTTTATCTGCCTTATCCACCAACAGTGTCCTCC...AGGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR-3UTR CCA 90 bp | TCATGGCTCTCTGTGATTTATTATTGTGCATCAGACATTGGACAGAACCTCCCAGCTTTCCCCCTTCTCTaGTTCAAGGGCCTGCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: SWLSVIYYCASDIGQNLPAFPLL*FKGLQQ Trigger: CTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGC...TGGGAGGTTCTGTCCAATGTCTGATGCACAATAATAAATCACAGAGAGCCATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| 3UTR-3UTR TCA 90 bp | TGGCTCTCTGTGATTTATTATTGTGCATCAGACATTGGACAGAACCTCCCAACATCCCCTTCTGAATTCTaGATCTCTCATCTCCCGGAG | + |
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Preference number: 2 (lower is better) Translates to: WLSVIYYCASDIGQNLPTSPSEF*ISHLPE Trigger: CTCCGGGAGATGAGAGATTCAGAATTCAGAAGGGGA...TGTTGGGAGGTTCTGTCCAATGTCTGATGCACAATAATAAATCACAGAGAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| 3UTR CCA 72 bp | AGGCAGGGGTCAGAAGCCTGGAGTCTGATCACAGGTTaGACCCTCCCTGATTGGGGCCGTGAGCAGCTTTCC | + |
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Preference number: 3 (lower is better) Translates to: RQGSEAWSLITG*TLPDWGREQLS Trigger: GGAAAGCTGCTCACGGCCCCAATCAGGGAGGGTCCAACCTGTGATCAGACTCCAGGCTTCTGACCCCTGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR CCA 72 bp | CCGGATGCAGGGGTGAGAAGGCAGGGGTCAGAAGCCTaGAGTCTGATCACAGGTTGGACCCTCCCTGATTGG | + |
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Preference number: 3 (lower is better) Translates to: PDAGVRRQGSEA*SLITGWTLPDW Trigger: CCAATCAGGGAGGGTCCAACCTGTGATCAGACTCCAGGCTTCTGACCCCTGCCTTCTCACCCCTGCATCCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR CCA 72 bp | GCCTGGAGTCTGATCACAGGTTGGACCCTCCCTGATTaGGGCCGTGAGCAGCTTTCCCCCTTCTCTGGTTCA | + |
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Preference number: 3 (lower is better) Translates to: AWSLITGWTLPD*GREQLSPFSGS Trigger: TGAACCAGAGAAGGGGGAAAGCTGCTCACGGCCCCAATCAGGGAGGGTCCAACCTGTGATCAGACTCCAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| 3UTR CCA 72 bp | CAGCTTCTTTTGCCAACAGCCCCCAGCCTAGTAGGTTaGTACCAGCCACGTTCCTTGTTGGGTCAGCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: QLLLPTAPSLVG*YQPRSLLGQQG Trigger: ACCCTGCTGACCCAACAAGGAACGTGGCTGGTACCAACCTACTAGGCTGGGGGCTGTTGGCAAAAGAAGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR TCA 72 bp | CCAGTTCCAAGACAGTTCGGAAGCCCTGGGCTGTGTTaGATTCGCAGTCTCTACTCCCACTTTCCCAGGCGT | + |
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Preference number: 3 (lower is better) Translates to: PVPRQFGSPGLC*IRSLYSHFPRR Trigger: ACGCCTGGGAAAGTGGGAGTAGAGACTGCGAATTCAACACAGCCCAGGGCTTCCGAACTGTCTTGGAACTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR TCA 72 bp | TCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCTaGCTCTTGAGCATCCTGGCAGGTGCTTTGGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: SRACSRARISYP*LLSILAGALVL Trigger: GAGCACCAAAGCACCTGCCAGGATGCTCAAGAGTCAGGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCTAAGCCCTGGGCTGTGTaGAATTCGCAGTCTCTACTC | + |
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Preference number: 3 (lower is better) Translates to: FPPSLVQGPAAEQGSHIPKPWAV*NSQSLL Trigger: GAGTAGAGACTGCGAATTCAACACAGCCCAGGGCTT...AGGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR CCA 72 bp | TACTTGGTGACCAGTTCCAAGACAGTTCGGAAGCCCTaGGCTGTGTTGAATTCGCAGTCTCTACTCCCACTT | + |
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Preference number: 3 (lower is better) Translates to: YLVTSSKTVRKP*AVLNSQSLLPL Trigger: AAGTGGGAGTAGAGACTGCGAATTCAACACAGCCCAGGGCTTCCGAACTGTCTTGGAACTGGTCACCAAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATAACTTTTTGGAGCATTTaGTGCAGGTATTCAGAGACC | + |
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Preference number: 3 (lower is better) Translates to: AAFPLLWFKGLQQSKDLITFWSI*CRYSET Trigger: GGTCTCTGAATACCTGCACAAAATGCTCCAAAAAGT...TATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| 3UTR GCA 72 bp | TCCAGGATCACAGGCCTGACTTTTTGGAGCATTTTGTaGAGGTATTCAGAGACCTTCGTCTTTCTAAAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SRITGLTFWSIL*RYSETFVFLKS Trigger: TGACTTTAGAAAGACGAAGGTCTCTGAATACCTGCACAAAATGCTCCAAAAAGTCAGGCCTGTGATCCTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| CDS-3UTR CCA 90 bp | GAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCACTCCAGGGCATACTGTaGGGGCAGCGGCTTCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: EQLSPFSGSRACSRARISLQGIL*GQRLPQ Trigger: CTGGGGAAGCCGCTGCCCCCACAGTATGCCCTGGAG...TGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR CCA 90 bp | GATTGGGGCCGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGAGACCCTCACAGGGTaGGTGGCACCTTGGAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: DWGREQLSPFSGSRACSRETLTG*VAPWKH Trigger: ATGCTTCCAAGGTGCCACCCACCCTGTGAGGGTCTC...TCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACGGCCCCAATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR CCA 90 bp | GGGGCCGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAAGCCACGTTCCTTGTTaGGTCAGCAGGGTCCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: GAVSSFPPSLVQGPAAEQSHVPC*VSRVQD Trigger: ATCCTGGACCCTGCTGACCCAACAAGGAACGTGGCT...TTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACGGCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR TCA 90 bp | CTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCCCCAGGCGTACACTGTaGGCAGCTCCAGGGCATACT | + |
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Preference number: 4 (lower is better) Translates to: LSPFSGSRACSRARISYPPRRTL*AAPGHT Trigger: AGTATGCCCTGGAGCTGCTCACAGTGTACGCCTGGG...GGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAG 58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR CCA 90 bp | CAGAACCTCCCAACAGGTGGACAGGTGGAAGTCAAGCTTGAGTTCCTGCCTCCCCCCTCACAGGGTGGGTaGCACCTTGGAAGCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: QNLPTGGQVEVKLEFLPPPSQGG*HLGSIS Trigger: AGAGATGCTTCCAAGGTGCCACCCACCCTGTGAGGG...GGGAGGCAGGAACTCAAGCTTGACTTCCACCTGTCCACCTGTTGGGAGGTTCTG 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| 3UTR CAA 72 bp | GCAGCTTCTTTTGCCAACAGCCCCCAGCCTAGTAGGTaGGTACCAGCCACGTTCCTTGTTGGGTCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: AASFANSPQPSR*VPATFLVGSAG Trigger: CCCTGCTGACCCAACAAGGAACGTGGCTGGTACCAACCTACTAGGCTGGGGGCTGTTGGCAAAAGAAGCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| CDS-3UTR GCA 90 bp | AGAACCTCCCAACAGGTGGACAGGTGGAAGTCAAGCTTGAGTTCCTGCCTCCCCTCAAATTCCACCTCCTaGTGGAGCTCAGGGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: RTSQQVDRWKSSLSSCLPSNSTS*WSSGEL Trigger: GAGCTCCCCTGAGCTCCAGCAGGAGGTGGAATTTGA...GGGGAGGCAGGAACTCAAGCTTGACTTCCACCTGTCCACCTGTTGGGAGGTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR GCA 90 bp | GAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATCAAATTCCACCTCCTaGTGGAGCTCAGGGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: EQLSPFSGSRACSRARISSNSTS*WSSGEL Trigger: GAGCTCCCCTGAGCTCCAGCAGGAGGTGGAATTTGA...TGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| CDS-3UTR CCA 90 bp | GCTATCTGTGATAGGACCGGATGCAGGGGTGAGAAGGCAGGGGTCAGAAGCCTGAGGACTGCAGCCAGATaGCAGCTTCTTTTGCCAACA | + |
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Preference number: 4 (lower is better) Translates to: AICDRTGCRGEKAGVRSLRTAAR*QLLLPT Trigger: TGTTGGCAAAAGAAGCTGCCATCTGGCTGCAGTCCT...CAGGCTTCTGACCCCTGCCTTCTCACCCCTGCATCCGGTCCTATCACAGATAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| 3UTR CAA 72 bp | ACCAGTTCCAAGACAGTTCGGAAGCCCTGGGCTGTGTaGAATTCGCAGTCTCTACTCCCACTTTCCCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: TSSKTVRKPWAV*NSQSLLPLSQA Trigger: CGCCTGGGAAAGTGGGAGTAGAGACTGCGAATTCAACACAGCCCAGGGCTTCCGAACTGTCTTGGAACTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| CDS-3UTR TCA 90 bp | CGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCCGAATTTCCTCAATaGACTCTCCCCGTCGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: REQLSPFSGSRACSRARISEFPQ*TLPVAL Trigger: TAAAGCGACGGGGAGAGTTCATTGAGGAAATTCGGA...GATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR TCA 90 bp | GCATCAGACATTGGACAGAACCTCCCAACAGGTGGACAGGTGGAAGTCAAGCTTCAGGGGAGCTCAGCTTaGAGCTCAGAGACCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: ASDIGQNLPTGGQVEVKLQGSSA*SSETWS Trigger: ACTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCTG...AAGCTTGACTTCCACCTGTCCACCTGTTGGGAGGTTCTGTCCAATGTCTGATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR TCA 90 bp | GAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCAGCCACTTGTACTTGGTaGCCAGTTCCAAGACAGTTC | + |
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Preference number: 4 (lower is better) Translates to: EQLSPFSGSRACSRARISATCTW*PVPRQF Trigger: GAACTGTCTTGGAACTGGTCACCAAGTACAAGTGGC...TGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR GCA 90 bp | ATTGGACAGAACCTCCCAACAGGTGGACAGGTGGAAGTCAAGCTTGAGTTCCTGCTAAAGCAGGAGGACTaGAGCCAGATGGCAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: IGQNLPTGGQVEVKLEFLLKQED*SQMAAS Trigger: AGAAGCTGCCATCTGGCTGCAGTCCTCCTGCTTTAG...CAGGAACTCAAGCTTGACTTCCACCTGTCCACCTGTTGGGAGGTTCTGTCCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR TCA 90 bp | TTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCTTGGTGCACTCATGGATaGGTTGGGCGTAGATTTTGT | + |
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Preference number: 4 (lower is better) Translates to: FPPSLVQGPAAEQGSHIPWCTHG*VGRRFC Trigger: ACAAAATCTACGCCCAACTCATCCATGAGTGCACCA...AGGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR TCA 90 bp | CAGGATCACAGGCCTGACTTTTTGGAGCATTTTGTGCAGGTATTCAGAGACCTTCAGGGGAGCTCAGCTTaGAGCTCAGAGACCTGGAGN | + |
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Preference number: 4 (lower is better) Translates to: QDHRPDFLEHFVQVFRDLQGSSA*SSETWX Trigger: NCTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCTG...AAGGTCTCTGAATACCTGCACAAAATGCTCCAAAAAGTCAGGCCTGTGATCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| CDS-3UTR CCA 90 bp | CAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATAAACTTCACTTTAAATaGTTTCTCATCCTGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: QLSPFSGSRACSRARISYKLHFK*FLILQL Trigger: CAGCTGCAGGATGAGAAACCATTTAAAGTGAAGTTT...ATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| 3UTR CAA 72 bp | GGGTCCAGGATCACAGGCCTGACTTTTTGGAGCATTTaGTGCAGGTATTCAGAGACCTTCGTCTTTCTAAAG | + |
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Preference number: 4 (lower is better) Translates to: GSRITGLTFWSI*CRYSETFVFLK Trigger: CTTTAGAAAGACGAAGGTCTCTGAATACCTGCACAAAATGCTCCAAAAAGTCAGGCCTGTGATCCTGGACCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000123431.2 |
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| CDS-3UTR CAA 90 bp | CTCCCTGATTGGGGCCGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCCTCAGAGACCTGGAGTaGGGCTCCTCTGAGCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: LPDWGREQLSPFSGSRACLRDLE*GSSELC Trigger: GCAGAGCTCAGAGGAGCCCAACTCCAGGTCTCTGAG...GCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACGGCCCCAATCAGGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR CAA 90 bp | CGTGAGCAGCTTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCAGGGGAGCTCAGCTaGAAGCTCAGAGACCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: REQLSPFSGSRACSRARISGELS*KLRDLE Trigger: CTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCTGA...GATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAAGCTGCTCACG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| CDS CCA 90 bp | CCGCCCATCACAACCCTGGAGACCCTCACAGGGTGGGTGGCACCTTaGAAGCATCTCTCCTTCAGGAAAGCACCTATGAAGTCCACGTCT | + |
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Preference number: 5 (lower is better) Translates to: PPITTLETLTGWVAP*KHLSFRKAPMKSTS Trigger: AGACGTGGACTTCATAGGTGCTTTCCTGAAGGAGAGATGCTTCCAAGGTGCCACCCACCCTGTGAGGGTCTCCAGGGTTGTGATGGGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 90 bp | GGTGGGTGGCACCTTGGAAGCATCTCTCCTTCAGGAAAGCACCTATaGAGTCCACGTCTGCTCTGGCCTCAGCATGGAAGCTGGAATCGG | + |
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Preference number: 5 (lower is better) Translates to: GGWHLGSISPSGKHL*SPRLLWPQHGSWNR Trigger: CCGATTCCAGCTTCCATGCTGAGGCCAGAGCAGACGTGGACTTCATAGGTGCTTTCCTGAAGGAGAGATGCTTCCAAGGTGCCACCCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR CAA 90 bp | GCTATCTGTGATAGGACCGGATGCAGGGGTGAGAAGGCAGGGGTCAGAAGCCTGAAGCCCTGGGCTGTGTaGAATTCGCAGTCTCTACTC | + |
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Preference number: 5 (lower is better) Translates to: AICDRTGCRGEKAGVRSLKPWAV*NSQSLL Trigger: GAGTAGAGACTGCGAATTCAACACAGCCCAGGGCTT...CAGGCTTCTGACCCCTGCCTTCTCACCCCTGCATCCGGTCCTATCACAGATAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 90 bp | TCAGCTTGGGTGCACGATCCTCCAGGAAGCTCTGATGGAGGTCGGTaGAGCAGATGGAGAACTCGCCCTCCTTCTTTAGTGTGGTGCACT | + |
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Preference number: 5 (lower is better) Translates to: SAWVHDPPGSSDGGR*SRWRTRPPSLVWCT Trigger: AGTGCACCACACTAAAGAAGGAGGGCGAGTTCTCCATCTGCTTCACCGACCTCCATCAGAGCTTCCTGGAGGATCGTGCACCCAAGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR CAA 90 bp | TTTCCCCCTTCTCTGGTTCAAGGGCCTGCAGCAGAGCAAGGATCTCATATCCCTTCAGGGGAGCTCAGCTaGAAGCTCAGAGACCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: FPPSLVQGPAAEQGSHIPSGELS*KLRDLE Trigger: CTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCTGA...AGGGATATGAGATCCTTGCTCTGCTGCAGGCCCTTGAACCAGAGAAGGGGGAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057814.5 ENSMUST00000123431.2 |
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| CDS-3UTR CAA 90 bp | GCATCAGACATTGGACAGAACCTCCCAACAGGTGGACAGGTGGAAGTCAAGCTTAGGGTGGGTGGCACCTaGGAAGCATCTCTCCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: ASDIGQNLPTGGQVEVKLRVGGT*EASLLQ Trigger: CTGAAGGAGAGATGCTTCCAAGGTGCCACCCACCCT...AAGCTTGACTTCCACCTGTCCACCTGTTGGGAGGTTCTGTCCAATGTCTGATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS GCA 90 bp | TTGGAAGCATCTCTCCTTCAGGAAAGCACCTATGAAGTCCACGTCTaGTCTGGCCTCAGCATGGAAGCTGGAATCGGGAAGGAGATGATC | + |
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Preference number: 5 (lower is better) Translates to: LEASLLQESTYEVHV*SGLSMEAGIGKEMI Trigger: GATCATCTCCTTCCCGATTCCAGCTTCCATGCTGAGGCCAGAGCAGACGTGGACTTCATAGGTGCTTTCCTGAAGGAGAGATGCTTCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 90 bp | AGGGGAGCTCAGCTTGAAGCTCAGAGACCTGGAGTTGGGCTCCTCTaGGCTCTGCACCTCAAACTTCACTTTAAATGGTTTCTCATCCTG | + |
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Preference number: 5 (lower is better) Translates to: RGAQLEAQRPGVGLL*ALHLKLHFKWFLIL Trigger: CAGGATGAGAAACCATTTAAAGTGAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR CAA 90 bp | AAGAAGGCTATCTGTGATAGGACCGGATGCAGGGGTGAGAAGGCAGGGGTCAGAACTTTTTGGAGCATTTaGTGCAGGTATTCAGAGACC | + |
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Preference number: 5 (lower is better) Translates to: KKAICDRTGCRGEKAGVRTFWSI*CRYSET Trigger: GGTCTCTGAATACCTGCACAAAATGCTCCAAAAAGT...TCTGACCCCTGCCTTCTCACCCCTGCATCCGGTCCTATCACAGATAGCCTTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 90 bp | CTCTGCACCTCAAACTTCACTTTAAATGGTTTCTCATCCTGCAGCTaGCACAGGTGTTTCCGAATTTCCTCAATGAACTCTCCCCGTCGC | + |
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Preference number: 5 (lower is better) Translates to: LCTSNFTLNGFSSCS*HRCFRISSMNSPRR Trigger: GCGACGGGGAGAGTTCATTGAGGAAATTCGGAAACACCTGTGTCAGCTGCAGGATGAGAAACCATTTAAAGTGAAGTTTGAGGTGCAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 90 bp | AGATGGAGAACTCGCCCTCCTTCTTTAGTGTGGTGCACTCATGGATaGGTTGGGCGTAGATTTTGTTGTACAAGTAGAGTTCAGCATACT | + |
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Preference number: 5 (lower is better) Translates to: RWRTRPPSLVWCTHG*VGRRFCCTSRVQHT Trigger: AGTATGCTGAACTCTACTTGTACAACAAAATCTACGCCCAACTCATCCATGAGTGCACCACACTAAAGAAGGAGGGCGAGTTCTCCATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS GCA 90 bp | AGGTGTTTCCGAATTTCCTCAATGAACTCTCCCCGTCGCTTTAACTaGTCCTCGAAGCTGGTGAGATTGTTAAGGAACACCACCATTTTA | + |
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Preference number: 5 (lower is better) Translates to: RCFRISSMNSPRRFN*SSKLVRLLRNTTIL Trigger: TAAAATGGTGGTGTTCCTTAACAATCTCACCAGCTTCGAGGAGCAGTTAAAGCGACGGGGAGAGTTCATTGAGGAAATTCGGAAACACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS-3UTR CAA 90 bp | CTCTCTGTGATTTATTATTGTGCATCAGACATTGGACAGAACCTCCCAACAGGTAGTTCAGCATACTTGTaGTTTCTCAGTTCATACAGG | + |
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Preference number: 5 (lower is better) Translates to: LSVIYYCASDIGQNLPTGSSAYL*FLSSYR Trigger: CCTGTATGAACTGAGAAACAACAAGTATGCTGAACT...ACCTGTTGGGAGGTTCTGTCCAATGTCTGATGCACAATAATAAATCACAGAGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS CAA 90 bp | TGCACATCAAATTCCACCTCCTGCTGGAGCTCAGGGGAGCTCAGCTaGAAGCTCAGAGACCTGGAGTTGGGCTCCTCTGAGCTCTGCACC | + |
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Preference number: 6 (lower is better) Translates to: CTSNSTSCWSSGELS*KLRDLELGSSELCT Trigger: GGTGCAGAGCTCAGAGGAGCCCAACTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCTGAGCTCCAGCAGGAGGTGGAATTTGATGTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 72 bp | TTCTTCAGCTTGGGTGCACGATCCTCCAGGAAGCTCTaGTGGAGGTCGGTGAAGCAGATGGAGAACTCGCCC | + |
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Preference number: 6 (lower is better) Translates to: FFSLGARSSRKL*WRSVKQMENSP Trigger: GGGCGAGTTCTCCATCTGCTTCACCGACCTCCATCAGAGCTTCCTGGAGGATCGTGCACCCAAGCTGAAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 72 bp | CTGGCCTCAGCATGGAAGCTGGAATCGGGAAGGAGATaGTCACGTATGAACTTGTCCAGCTCACAGGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LASAWKLESGRR*SRMNLSSSQAG Trigger: CCCAGCCTGTGAGCTGGACAAGTTCATACGTGATCATCTCCTTCCCGATTCCAGCTTCCATGCTGAGGCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 72 bp | GTGCACGATCCTCCAGGAAGCTCTGATGGAGGTCGGTaGAGCAGATGGAGAACTCGCCCTCCTTCTTTAGTG | + |
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Preference number: 6 (lower is better) Translates to: VHDPPGSSDGGR*SRWRTRPPSLV Trigger: CACTAAAGAAGGAGGGCGAGTTCTCCATCTGCTTCACCGACCTCCATCAGAGCTTCCTGGAGGATCGTGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS GCA 72 bp | GTGCTTGACCAAACGGATGAGGTTCTTCAGCTTGGGTaGACGATCCTCCAGGAAGCTCTGATGGAGGTCGGT | + |
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Preference number: 6 (lower is better) Translates to: VLDQTDEVLQLG*TILQEALMEVG Trigger: ACCGACCTCCATCAGAGCTTCCTGGAGGATCGTGCACCCAAGCTGAAGAACCTCATCCGTTTGGTCAAGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS CAA 72 bp | TCAGGGGAGCTCAGCTTGAAGCTCAGAGACCTGGAGTaGGGCTCCTCTGAGCTCTGCACCTCAAACTTCACT | + |
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Preference number: 6 (lower is better) Translates to: SGELSLKLRDLE*GSSELCTSNFT Trigger: AGTGAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS CAA 90 bp | TGCTGGAGCTCAGGGGAGCTCAGCTTGAAGCTCAGAGACCTGGAGTaGGGCTCCTCTGAGCTCTGCACCTCAAACTTCACTTTAAATGGT | + |
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Preference number: 6 (lower is better) Translates to: CWSSGELSLKLRDLE*GSSELCTSNFTLNG Trigger: ACCATTTAAAGTGAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACTCCAGGTCTCTGAGCTTCAAGCTGAGCTCCCCTGAGCTCCAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS CAA 72 bp | CCCCGTCGCTTTAACTGCTCCTCGAAGCTGGTGAGATaGTTAAGGAACACCACCATTTTAGCCTCTGACTTG | + |
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Preference number: 6 (lower is better) Translates to: PRRFNCSSKLVR*LRNTTILASDL Trigger: CAAGTCAGAGGCTAAAATGGTGGTGTTCCTTAACAATCTCACCAGCTTCGAGGAGCAGTTAAAGCGACGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS GCA 72 bp | CGAATTTCCTCAATGAACTCTCCCCGTCGCTTTAACTaGTCCTCGAAGCTGGTGAGATTGTTAAGGAACACC | + |
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Preference number: 6 (lower is better) Translates to: RISSMNSPRRFN*SSKLVRLLRNT Trigger: GGTGTTCCTTAACAATCTCACCAGCTTCGAGGAGCAGTTAAAGCGACGGGGAGAGTTCATTGAGGAAATTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS GCA 72 bp | AAGCTCAGAGACCTGGAGTTGGGCTCCTCTGAGCTCTaGACCTCAAACTTCACTTTAAATGGTTTCTCATCC | + |
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Preference number: 6 (lower is better) Translates to: KLRDLELGSSEL*TSNFTLNGFSS Trigger: GGATGAGAAACCATTTAAAGTGAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACTCCAGGTCTCTGAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS CCA 72 bp | CTTGTTGTTTCTCAGTTCATACAGGACATCATAGGCTaGCTGCACATCAAATTCCACCTCCTGCTGGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LVVSQFIQDIIG*LHIKFHLLLEL Trigger: GAGCTCCAGCAGGAGGTGGAATTTGATGTGCAGCCAGCCTATGATGTCCTGTATGAACTGAGAAACAACAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS CAA 90 bp | ATGAACTCTCCCCGTCGCTTTAACTGCTCCTCGAAGCTGGTGAGATaGTTAAGGAACACCACCATTTTAGCCTCTGACTTGCTCTTGAGT | + |
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Preference number: 6 (lower is better) Translates to: MNSPRRFNCSSKLVR*LRNTTILASDLLLS Trigger: ACTCAAGAGCAAGTCAGAGGCTAAAATGGTGGTGTTCCTTAACAATCTCACCAGCTTCGAGGAGCAGTTAAAGCGACGGGGAGAGTTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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| CDS TCA 72 bp | TCAAACTTCACTTTAAATGGTTTCTCATCCTGCAGCTaGCACAGGTGTTTCCGAATTTCCTCAATGAACTCT | + |
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Preference number: 6 (lower is better) Translates to: SNFTLNGFSSCS*HRCFRISSMNS Trigger: AGAGTTCATTGAGGAAATTCGGAAACACCTGTGTCAGCTGCAGGATGAGAAACCATTTAAAGTGAAGTTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057814.5 |
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