RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OAS1E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066867

Ensembl transcript IDs: ENSMUST00000100785.7, ENSMUST00000200786.2, ENSMUST00000201172.2

Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTaGTTTGATGATGACGATCAGCCACTATTGGACAGAACCTCCCAA +
Preference number: 1 (lower is better)
Translates to: GLRTPSECTLPHGLL*FDDDDQPLLDRTSQ
Trigger: TTGGGAGGTTCTGTCCAATAGTGGCTGATCGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
3UTR CCA 90 bp AAACCCGGCCTGCATGTTGTAGAAACAGTGCACCTTGATGAACACTaGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAG +
Preference number: 1 (lower is better)
Translates to: KPGLHVVETVHLDEH*PDSQGARATCTAEK
Trigger: CTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTCATCAAGGTGCACTGTTTCTACAACATGCAGGCCGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
3UTR TCA 90 bp AGTCATAAAACCATGTCCAGTAGATTAGAAGGCATTTGTACTTGGTaGCCAGTTCTAAGACCGTTCGGAAGCACTGGGCTGCATGGAGTC +
Preference number: 1 (lower is better)
Translates to: SHKTMSSRLEGICTW*PVLRPFGSTGLHGV
Trigger: GACTCCATGCAGCCCAGTGCTTCCGAACGGTCTTAGAACTGGTCACCAAGTACAAATGCCTTCTAATCTACTGGACATGGTTTTATGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
3UTR-3UTR CCA 90 bp CCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTTGATGATGACGATCAGCGAGGAAGGCTATCCATaGGCAGGCAGGGATCAGAAG +
Preference number: 2 (lower is better)
Translates to: PQSAPSPMACCDLMMTISEEGYP*AGRDQK
Trigger: CTTCTGATCCCTGCCTGCCCATGGATAGCCTTCCTC...GCTGATCGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
3UTR-3UTR TCA 90 bp CCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTGTGGTCTGTCCATCACAGCCTaGCTCCCAGAGAACACTGTT +
Preference number: 2 (lower is better)
Translates to: PDSQGARATCTAEKFLCGLSITA*LPENTV
Trigger: AACAGTGTTCTCTGGGAGTCAGGCTGTGATGGACAG...ACCACACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
3UTR-3UTR CCA 90 bp AATTTGAATGTATCCAGGTCTGAGCCTCCTTTGCCAGCAGGTCCCATGCCTGTAAGCCACGTTCCTTGTTaGGTCTGCCGGATCCAGGAT +
Preference number: 2 (lower is better)
Translates to: NLNVSRSEPPLPAGPMPVSHVPC*VCRIQD
Trigger: ATCCTGGATCCGGCAGACCCAACAAGGAACGTGGCT...TACAGGCATGGGACCTGCTGGCAAAGGAGGCTCAGACCTGGATACATTCAAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
3UTR-3UTR CCA 90 bp AATTTGAATGTATCCAGGTCTGAGCCTCCTTTGCCAGCAGGTCCCATGCCTGTAAGTCCAAAGCTGTCTTaGACCCCAAATTCCCAGACG +
Preference number: 2 (lower is better)
Translates to: NLNVSRSEPPLPAGPMPVSPKLS*TPNSQT
Trigger: CGTCTGGGAATTTGGGGTCCAAGACAGCTTTGGACT...TACAGGCATGGGACCTGCTGGCAAAGGAGGCTCAGACCTGGATACATTCAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
3UTR-3UTR TCA 90 bp AATTTGAATGTATCCAGGTCTGAGCCTCCTTTGCCAGCAGGTCCCATGCCTGTATTCTCCTTACACAGTTaGTACCAGTGCTTGACCAGA +
Preference number: 2 (lower is better)
Translates to: NLNVSRSEPPLPAGPMPVFSLHS*YQCLTR
Trigger: TCTGGTCAAGCACTGGTATCAACTGTGTAAGGAGAA...TACAGGCATGGGACCTGCTGGCAAAGGAGGCTCAGACCTGGATACATTCAAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
3UTR TCA 72 bp GGGCCACATGCACTGCTGAAAAGTTTCTGTGTGGTCTaGGGACTCCCTCAGAGTGCACCCTCCCCCATGGCT +
Preference number: 3 (lower is better)
Translates to: GPHALLKSFCVV*GLPQSAPSPMA
Trigger: AGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTTTCAGCAGTGCATGTGGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
3UTR TCA 72 bp GCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTaGAAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGA +
Preference number: 3 (lower is better)
Translates to: ARFPGCQGHMHC*KVSVWSEDSLR
Trigger: TCTGAGGGAGTCCTCAGACCACACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
3UTR CCA 72 bp GGAAGGCTATCCATGGGCAGGCAGGGATCAGAAGCCTaGAGTCTAATCACAGGTTGGATACCCCTCGCTGGA +
Preference number: 3 (lower is better)
Translates to: GRLSMGRQGSEA*SLITGWIPLAG
Trigger: TCCAGCGAGGGGTATCCAACCTGTGATTAGACTCCAGGCTTCTGATCCCTGCCTGCCCATGGATAGCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
3UTR GCA 72 bp GAACCTCCCAACAGGTGGACAGATGGAAGTCGAGCTTaGGTTCTTCTCTGTCCATCACAGCCTGACTCCCAG +
Preference number: 3 (lower is better)
Translates to: EPPNRWTDGSRA*VLLCPSQPDSQ
Trigger: CTGGGAGTCAGGCTGTGATGGACAGAGAAGAACGCAAGCTCGACTTCCATCTGTCCACCTGTTGGGAGGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
3UTR GCA 72 bp GAACACTGGCCAGATTCCCAGGGTGCCAGGGCCACATaGACTGCTGAAAAGTTTCTGTGTGGTCTGAGGACT +
Preference number: 3 (lower is better)
Translates to: EHWPDSQGARAT*TAEKFLCGLRT
Trigger: AGTCCTCAGACCACACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
3UTR CCA 72 bp CTGCATGTTGTAGAAACAGTGCACCTTGATGAACACTaGCCAGATTCCCAGGGTGCCAGGGCCACATGCACT +
Preference number: 3 (lower is better)
Translates to: LHVVETVHLDEH*PDSQGARATCT
Trigger: AGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTCATCAAGGTGCACTGTTTCTACAACATGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
3UTR-3UTR CAA 90 bp AATGTATCCAGGTCTGAGCCTCCTTTGCCAGCAGGTCCCATGCCTGTAAGTCTGCTTCTCCTTACACAGTaGATACCAGTGCTTGACCAG +
Preference number: 3 (lower is better)
Translates to: NVSRSEPPLPAGPMPVSLLLLTQ*IPVLDQ
Trigger: CTGGTCAAGCACTGGTATCAACTGTGTAAGGAGAAG...CAGACTTACAGGCATGGGACCTGCTGGCAAAGGAGGCTCAGACCTGGATACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
3UTR CCA 72 bp CCACTATTGGACAGAACCTCCCAACAGGTGGACAGATaGAAGTCGAGCTTGCGTTCTTCTCTGTCCATCACA +
Preference number: 3 (lower is better)
Translates to: PLLDRTSQQVDR*KSSLRSSLSIT
Trigger: TGTGATGGACAGAGAAGAACGCAAGCTCGACTTCCATCTGTCCACCTGTTGGGAGGTTCTGTCCAATAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
3UTR CCA 72 bp ACGATCAGCCACTATTGGACAGAACCTCCCAACAGGTaGACAGATGGAAGTCGAGCTTGCGTTCTTCTCTGT +
Preference number: 3 (lower is better)
Translates to: TISHYWTEPPNR*TDGSRACVLLC
Trigger: ACAGAGAAGAACGCAAGCTCGACTTCCATCTGTCCACCTGTTGGGAGGTTCTGTCCAATAGTGGCTGATCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
3UTR TCA 72 bp ACCATGTCCAGTAGATTAGAAGGCATTTGTACTTGGTaGCCAGTTCTAAGACCGTTCGGAAGCACTGGGCTG +
Preference number: 3 (lower is better)
Translates to: TMSSRLEGICTW*PVLRPFGSTGL
Trigger: CAGCCCAGTGCTTCCGAACGGTCTTAGAACTGGTCACCAAGTACAAATGCCTTCTAATCTACTGGACATGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
CDS-3UTR TCA 90 bp GTGCACCTTGATGAACACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTCTGGGGAGCACAGCTTaGAGGTCAGAGACCTGGTGT +
Preference number: 4 (lower is better)
Translates to: VHLDEHWPDSQGARATCTLGSTA*RSETWC
Trigger: ACACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAG...AGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTCATCAAGGTGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp AAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGCCCAGACGTAGACTGTaGGCAGCTCCAGGGCATACT +
Preference number: 4 (lower is better)
Translates to: KFLCGLRTPSECTLPHGLPRRRL*AAPGHT
Trigger: AGTATGCCCTGGAGCTGCTCACAGTCTACGTCTGGG...CAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp GGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTTGATGATGACGCCCAGACGTAGACTGTaGGCAGCTCCAGGGCATACT +
Preference number: 4 (lower is better)
Translates to: GLPQSAPSPMACCDLMMTPRRRL*AAPGHT
Trigger: AGTATGCCCTGGAGCTGCTCACAGTCTACGTCTGGG...CGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp GCTGAAAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATAATTCCACCTCCTGCTaGCGCTCTGGGGAGCACAGC +
Preference number: 4 (lower is better)
Translates to: AEKFLCGLRTPSECTLPHNSTSC*RSGEHS
Trigger: GCTGTGCTCCCCAGAGCGCCAGCAGGAGGTGGAATT...ATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTTTCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp ACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTAATTCCACCTCCTGCTaGCGCTCTGGGGAGCACAGC +
Preference number: 4 (lower is better)
Translates to: TGQIPRVPGPHALLKSFCNSTSC*RSGEHS
Trigger: GCTGTGCTCCCCAGAGCGCCAGCAGGAGGTGGAATT...ACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp AAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTCTGGGGAGCACAGCTTaGAGGTCAGAGACCTGGTGT +
Preference number: 4 (lower is better)
Translates to: KVSVWSEDSLRVHPPPWLLGSTA*RSETWC
Trigger: ACACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAG...AAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp TTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGCTGCTGTCCATCACAGCCTaGCTCCCAGAGAACACTGTT +
Preference number: 4 (lower is better)
Translates to: FLCGLRTPSECTLPHGLLLSITA*LPENTV
Trigger: AACAGTGTTCTCTGGGAGTCAGGCTGTGATGGACAG...CAGCAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp GTGCACCTTGATGAACACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTAAGCACTGGGCTGCATaGAGTCCAAAGCTGTCTTGG +
Preference number: 4 (lower is better)
Translates to: VHLDEHWPDSQGARATCTKHWAA*SPKLSW
Trigger: CCAAGACAGCTTTGGACTCCATGCAGCCCAGTGCTT...AGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTCATCAAGGTGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp AAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGAATGTATCCAGGTCTaGGCCTCCTTTGCCAGCAGG +
Preference number: 4 (lower is better)
Translates to: KVSVWSEDSLRVHPPPWLECIQV*ASFASR
Trigger: CCTGCTGGCAAAGGAGGCTCAGACCTGGATACATTC...AAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR GCA 90 bp AAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGTTCCTTGTTGGGTCTaGCGGATCCAGGATCAGAGG +
Preference number: 4 (lower is better)
Translates to: KVSVWSEDSLRVHPPPWLVPCWV*RIQDQR
Trigger: CCTCTGATCCTGGATCCGGCAGACCCAACAAGGAAC...AAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR GCA 90 bp CAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTGTGGTCGTTCCTTGTTGGGTCTaGCGGATCCAGGATCAGAGG +
Preference number: 4 (lower is better)
Translates to: QIPRVPGPHALLKSFCVVVPCWV*RIQDQR
Trigger: CCTCTGATCCTGGATCCGGCAGACCCAACAAGGAAC...GACCACACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp GCTGAAAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATAGCCACGTTCCTTGTTaGGTCTGCCGGATCCAGGAT +
Preference number: 4 (lower is better)
Translates to: AEKFLCGLRTPSECTLPHSHVPC*VCRIQD
Trigger: ATCCTGGATCCGGCAGACCCAACAAGGAACGTGGCT...ATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTTTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp ACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTAGCCACGTTCCTTGTTaGGTCTGCCGGATCCAGGAT +
Preference number: 4 (lower is better)
Translates to: TGQIPRVPGPHALLKSFCSHVPC*VCRIQD
Trigger: ATCCTGGATCCGGCAGACCCAACAAGGAACGTGGCT...ACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp CCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTTGATGATGACGATCAGCCACCATGTTGGCCTCTaGCCTTCCCTTGAGTGCATT +
Preference number: 4 (lower is better)
Translates to: PQSAPSPMACCDLMMTISHHVGL*PSLECI
Trigger: AATGCACTCAAGGGAAGGTCAGAGGCCAACATGGTG...GCTGATCGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS-3UTR TCA 90 bp CAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTGTGGTCCACCATGTTGGCCTCTaGCCTTCCCTTGAGTGCATT +
Preference number: 4 (lower is better)
Translates to: QIPRVPGPHALLKSFCVVHHVGL*PSLECI
Trigger: AATGCACTCAAGGGAAGGTCAGAGGCCAACATGGTG...GACCACACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp GCTGAAAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATAAGCACTGGGCTGCATaGAGTCCAAAGCTGTCTTGG +
Preference number: 4 (lower is better)
Translates to: AEKFLCGLRTPSECTLPHKHWAA*SPKLSW
Trigger: CCAAGACAGCTTTGGACTCCATGCAGCCCAGTGCTT...ATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTTTCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp GGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTTGATGATGACGCCTCTGACCTTCCCTTaGGTGCATTGTGTTCATCAT +
Preference number: 4 (lower is better)
Translates to: GLPQSAPSPMACCDLMMTPLTFP*VHCVHH
Trigger: ATGATGAACACAATGCACTCAAGGGAAGGTCAGAGG...CGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp CTATTGGACAGAACCTCCCAACAGGTGGACAGATGGAAGTCGAGCTTGCGTTCTGAATGTATCCAGGTCTaGGCCTCCTTTGCCAGCAGG +
Preference number: 4 (lower is better)
Translates to: LLDRTSQQVDRWKSSLRSECIQV*ASFASR
Trigger: CCTGCTGGCAAAGGAGGCTCAGACCTGGATACATTC...AGAACGCAAGCTCGACTTCCATCTGTCCACCTGTTGGGAGGTTCTGTCCAATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS-3UTR GCA 90 bp CAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTGTGGTCCATGGCTTCTCTTGCTaGAACTGGAGCAGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: QIPRVPGPHALLKSFCVVHGFSC*NWSRCF
Trigger: GAAACACCTGCTCCAGTTGCAGCAAGAGAAGCCATG...GACCACACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR GCA 90 bp AAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGGGCTCCTCTGAGCTCTaGACCTCAAACTTGAGTTTA +
Preference number: 4 (lower is better)
Translates to: KFLCGLRTPSECTLPHGLGSSEL*TSNLSL
Trigger: TAAACTCAAGTTTGAGGTGCAGAGCTCAGAGGAGCC...CAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR GCA 90 bp GGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTTGATGATGACGGGCTCCTCTGAGCTCTaGACCTCAAACTTGAGTTTA +
Preference number: 4 (lower is better)
Translates to: GLPQSAPSPMACCDLMMTGSSEL*TSNLSL
Trigger: TAAACTCAAGTTTGAGGTGCAGAGCTCAGAGGAGCC...CGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
3UTR CAA 72 bp CCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTaGATGATGACGATCAGCCACTATTGGACAGAACCT +
Preference number: 4 (lower is better)
Translates to: PQSAPSPMACCD*MMTISHYWTEP
Trigger: AGGTTCTGTCCAATAGTGGCTGATCGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS-3UTR TCA 90 bp GTGCACCTTGATGAACACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTTCTGCACCTCAAACTTaGGTTTACATGGCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: VHLDEHWPDSQGARATCTSAPQT*VYMASL
Trigger: AAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGA...AGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTCATCAAGGTGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp AAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGGCATTTGTACTTGGTaGCCAGTTCTAAGACCGTTC +
Preference number: 4 (lower is better)
Translates to: KVSVWSEDSLRVHPPPWLGICTW*PVLRPF
Trigger: GAACGGTCTTAGAACTGGTCACCAAGTACAAATGCC...AAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp ATGAACACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTGGCATTTGTACTTGGTaGCCAGTTCTAAGACCGTTC +
Preference number: 4 (lower is better)
Translates to: MNTGQIPRVPGPHALLKSGICTW*PVLRPF
Trigger: GAACGGTCTTAGAACTGGTCACCAAGTACAAATGCC...ACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR GCA 90 bp ACCTTGATGAACACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGTCTTCAATGAACACTTaGTGCCACTTTAACTGGTCC +
Preference number: 4 (lower is better)
Translates to: TLMNTGQIPRVPGPHALLSSMNT*CHFNWS
Trigger: GGACCAGTTAAAGTGGCAGCAAGTGTTCATTGAAGA...CAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTCATCAAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp AAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGTCTGCACCTCAAACTTaGGTTTACATGGCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: KFLCGLRTPSECTLPHGLSAPQT*VYMASL
Trigger: AAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGA...CAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp AAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTTTCTCCTTACACAGTTaGTACCAGTGCTTGACCAGA +
Preference number: 4 (lower is better)
Translates to: KVSVWSEDSLRVHPPPWLFSLHS*YQCLTR
Trigger: TCTGGTCAAGCACTGGTATCAACTGTGTAAGGAGAA...AAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR TCA 90 bp CAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTGTGGTCTTCTCCTTACACAGTTaGTACCAGTGCTTGACCAGA +
Preference number: 4 (lower is better)
Translates to: QIPRVPGPHALLKSFCVVFSLHS*YQCLTR
Trigger: TCTGGTCAAGCACTGGTATCAACTGTGTAAGGAGAA...GACCACACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR GCA 90 bp GGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTTGATGATGACGTCTTCAATGAACACTTaGTGCCACTTTAACTGGTCC +
Preference number: 4 (lower is better)
Translates to: GLPQSAPSPMACCDLMMTSSMNT*CHFNWS
Trigger: GGACCAGTTAAAGTGGCAGCAAGTGTTCATTGAAGA...CGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp ACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTTTCTCTTGCTGCAACTaGAGCAGGTGTTTCCGAATT +
Preference number: 4 (lower is better)
Translates to: TGQIPRVPGPHALLKSFCFSCCN*SRCFRI
Trigger: AATTCGGAAACACCTGCTCCAGTTGCAGCAAGAGAA...ACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp GTCCTCTCTAGGTCAAAGTCTTACAGCGGAGGAGCACATGATCCTGACTCTGGAAGTCCAAAGCTGTCTTaGACCCCAAATTCCCAGACG +
Preference number: 4 (lower is better)
Translates to: VLSRSKSYSGGAHDPDSGSPKLS*TPNSQT
Trigger: CGTCTGGGAATTTGGGGTCCAAGACAGCTTTGGACT...TCCAGAGTCAGGATCATGTGCTCCTCCGCTGTAAGACTTTGACCTAGAGAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS-3UTR GCA 90 bp TATTGGACAGAACCTCCCAACAGGTGGACAGATGGAAGTCGAGCTTGCGTTCTTCATGGCTTCTCTTGCTaGAACTGGAGCAGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: YWTEPPNRWTDGSRACVLHGFSC*NWSRCF
Trigger: GAAACACCTGCTCCAGTTGCAGCAAGAGAAGCCATG...AAGAACGCAAGCTCGACTTCCATCTGTCCACCTGTTGGGAGGTTCTGTCCAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS-3UTR GCA 90 bp CTATTGGACAGAACCTCCCAACAGGTGGACAGATGGAAGTCGAGCTTGCGTTCTTTACATGGCTTCTCTTaGTGCAACTGGAGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: LLDRTSQQVDRWKSSLRSLHGFS*CNWSRC
Trigger: ACACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAA...AGAACGCAAGCTCGACTTCCATCTGTCCACCTGTTGGGAGGTTCTGTCCAATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS-3UTR TCA 90 bp TATTGGACAGAACCTCCCAACAGGTGGACAGATGGAAGTCGAGCTTGCGTTCTTCCTCTGACCTTCCCTTaGGTGCATTGTGTTCATCAT +
Preference number: 4 (lower is better)
Translates to: YWTEPPNRWTDGSRACVLPLTFP*VHCVHH
Trigger: ATGATGAACACAATGCACTCAAGGGAAGGTCAGAGG...AAGAACGCAAGCTCGACTTCCATCTGTCCACCTGTTGGGAGGTTCTGTCCAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS-3UTR TCA 90 bp ACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTTTCTGTTCCGAATTTCTTCAATaGACACTTGCTGCCACTTTA +
Preference number: 4 (lower is better)
Translates to: TGQIPRVPGPHALLKSFCSEFLQ*TLAATL
Trigger: TAAAGTGGCAGCAAGTGTTCATTGAAGAAATTCGGA...ACAGAAACTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CCA 90 bp TTTGATGATGACGATCAGCCACTATTGGACAGAACCTCCCAACAGGTGGACAGATTCTCTTGCTGCAACTaGAGCAGGTGTTTCCGAATT +
Preference number: 4 (lower is better)
Translates to: FDDDDQPLLDRTSQQVDRFSCCN*SRCFRI
Trigger: AATTCGGAAACACCTGCTCCAGTTGCAGCAAGAGAA...TCTGTCCACCTGTTGGGAGGTTCTGTCCAATAGTGGCTGATCGTCATCATCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS TCA 90 bp GCACATCAAATTCCACCTCCTGCTGGCGCTCTGGGGAGCACAGCTTaGAGGTCAGAGACCTGGTGTTGGGCTCCTCTGAGCTCTGCACCT +
Preference number: 5 (lower is better)
Translates to: AHQIPPPAGALGSTA*RSETWCWAPLSSAP
Trigger: AGGTGCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAGAGCGCCAGCAGGAGGTGGAATTTGATGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CAA 90 bp AAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGGTCAGAGACCTGGTGTaGGGCTCCTCTGAGCTCTGC +
Preference number: 5 (lower is better)
Translates to: KFLCGLRTPSECTLPHGLVRDLV*GSSELC
Trigger: GCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGAC...CAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS TCA 90 bp AGAGCTTGGGCGCACGATACCTCAGGAAGCTCTGATGAAGGTCGGTaGAGCAGATGGAGAACTCGCCCTCCTTCTCCAGGGTGGTGCACT +
Preference number: 5 (lower is better)
Translates to: RAWAHDTSGSSDEGR*SRWRTRPPSPGWCT
Trigger: AGTGCACCACCCTGGAGAAGGAGGGCGAGTTCTCCATCTGCTTCACCGACCTTCATCAGAGCTTCCTGAGGTATCGTGCGCCCAAGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CAA 90 bp GATGAACACTGGCCAGATTCCCAGGGTGCCAGGGCCACATGCACTGCTGAAAAGTCTGGGGAGCACAGCTaGAAGGTCAGAGACCTGGTG +
Preference number: 5 (lower is better)
Translates to: DEHWPDSQGARATCTAEKSGEHS*KVRDLV
Trigger: CACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAGA...CTTTTCAGCAGTGCATGTGGCCCTGGCACCCTGGGAATCTGGCCAGTGTTCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CAA 90 bp CCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTTGATGATGACGATCAGCTCTGGGGAGCACAGCTaGAAGGTCAGAGACCTGGTG +
Preference number: 5 (lower is better)
Translates to: PQSAPSPMACCDLMMTISSGEHS*KVRDLV
Trigger: CACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAGA...GCTGATCGTCATCATCAAATCACAGCAAGCCATGGGGGAGGGTGCACTCTGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS CCA 90 bp CCTCCCATCACAACCCTGGCGACCCTCATAGGGTGGGTGGCACCTTaGAAGCATCTCTCCTTCAGGAAAGCACTTATGGAGTCGATGTCT +
Preference number: 5 (lower is better)
Translates to: PPITTLATLIGWVAP*KHLSFRKALMESMS
Trigger: AGACATCGACTCCATAAGTGCTTTCCTGAAGGAGAGATGCTTCCAAGGTGCCACCCACCCTATGAGGGTCGCCAGGGTTGTGATGGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CCA 90 bp GCAGTATCCCCCTTCATCATCACAACCCTGGCGACCCTCATAGGGTaGGTGGCACCTTGGAAGCATCTCTCCTTCAGGAAAGCACTTATG +
Preference number: 5 (lower is better)
Translates to: AVSPFIITTLATLIG*VAPWKHLSFRKALM
Trigger: CATAAGTGCTTTCCTGAAGGAGAGATGCTTCCAAGGTGCCACCCACCCTATGAGGGTCGCCAGGGTTGTGATGATGAAGGGGGATACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
CDS-3UTR CAA 90 bp AAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGTTTACATGGCTTCTCTaGCTGCAACTGGAGCAGGTG +
Preference number: 5 (lower is better)
Translates to: KFLCGLRTPSECTLPHGLFTWLL*LQLEQV
Trigger: CACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAAA...CAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CAA 90 bp GAAAAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTTACATGGCTTCTCTaGCTGCAACTGGAGCAGGTG +
Preference number: 5 (lower is better)
Translates to: EKFLCGLRTPSECTLPHGFTWLL*LQLEQV
Trigger: CACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAAA...GCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CAA 90 bp ATGATGACGATCAGCCACTATTGGACAGAACCTCCCAACAGGTGGACAGATGGAGTCAGAGACCTGGTGTaGGGCTCCTCTGAGCTCTGC +
Preference number: 5 (lower is better)
Translates to: MMTISHYWTEPPNRWTDGVRDLV*GSSELC
Trigger: GCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGAC...TCCATCTGTCCACCTGTTGGGAGGTTCTGTCCAATAGTGGCTGATCGTCATCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100785.7
CDS TCA 90 bp TGGGGAGCACAGCTTGAAGGTCAGAGACCTGGTGTTGGGCTCCTCTaGGCTCTGCACCTCAAACTTGAGTTTACATGGCTTCTCTTGCTG +
Preference number: 5 (lower is better)
Translates to: WGAQLEGQRPGVGLL*ALHLKLEFTWLLLL
Trigger: CAGCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS TCA 90 bp GACAGATGGAAGTCGAGCTTGCGTTCTTCTCTGTCCATCACAGCCTaGCTCCCAGAGAACACTGTTGGAAGCGACACTTCCCAGCCATTC +
Preference number: 5 (lower is better)
Translates to: DRWKSSLRSSLSITA*LPENTVGSDTSQPF
Trigger: GAATGGCTGGGAAGTGTCGCTTCCAACAGTGTTCTCTGGGAGTCAGGCTGTGATGGACAGAGAAGAACGCAAGCTCGACTTCCATCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201172.2
CDS CCA 90 bp TTCAAAGGACTTGCAGTATCCCCCTTCATACAGAGCATCATAGGCTaGCTGCACATCAAATTCCACCTCCTGCTGGCGCTCTGGGGAGCA +
Preference number: 5 (lower is better)
Translates to: FKGLAVSPFIQSIIG*LHIKFHLLLALWGA
Trigger: TGCTCCCCAGAGCGCCAGCAGGAGGTGGAATTTGATGTGCAGCCAGCCTATGATGCTCTGTATGAAGGGGGATACTGCAAGTCCTTTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS-3UTR CAA 90 bp TTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGCTGGGTGTCAGGAAGGAGTaGATCCTCTATGAAGTTATC +
Preference number: 5 (lower is better)
Translates to: FLCGLRTPSECTLPHGLLGVRKE*ILYEVI
Trigger: GATAACTTCATAGAGGATCAACTCCTTCCTGACACC...CAGCAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CCA 90 bp TTCATCATCACAACCCTGGCGACCCTCATAGGGTGGGTGGCACCTTaGAAGCATCTCTCCTTCAGGAAAGCACTTATGGAGTCGATGTCT +
Preference number: 5 (lower is better)
Translates to: FIITTLATLIGWVAP*KHLSFRKALMESMS
Trigger: AGACATCGACTCCATAAGTGCTTTCCTGAAGGAGAGATGCTTCCAAGGTGCCACCCACCCTATGAGGGTCGCCAGGGTTGTGATGATGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
CDS-3UTR CAA 90 bp GGGCATACTGTGGAGGCAGCGGTCCCCTCAGCTTCTCCTTACACAGTTGATACCGGTGTCAGGAAGGAGTaGATCCTCTATGAAGTTATC +
Preference number: 5 (lower is better)
Translates to: GHTVEAAVPSASPYTVDTGVRKE*ILYEVI
Trigger: GATAACTTCATAGAGGATCAACTCCTTCCTGACACC...GGTATCAACTGTGTAAGGAGAAGCTGAGGGGACCGCTGCCTCCACAGTATGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
CDS-3UTR CAA 90 bp AAGTTTCTGTGTGGTCTGAGGACTCCCTCAGAGTGCACCCTCCCCCATGGCTTGGGTGTCAGGAAGGAGTaGATCCTCTATGAAGTTATC +
Preference number: 5 (lower is better)
Translates to: KFLCGLRTPSECTLPHGLGVRKE*ILYEVI
Trigger: GATAACTTCATAGAGGATCAACTCCTTCCTGACACC...CAAGCCATGGGGGAGGGTGCACTCTGAGGGAGTCCTCAGACCACACAGAAACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS TCA 90 bp ATGTCTGCTCTGAGCTCAGTAAGGAAGGTGGTGTCAGGAAGGAGTTaGTCCTCTATGAAGTTATCCAGCCTCCAGATTGGGGTTCTGAAG +
Preference number: 5 (lower is better)
Translates to: MSALSSVRKVVSGRS*SSMKLSSLQIGVLK
Trigger: CTTCAGAACCCCAATCTGGAGGCTGGATAACTTCATAGAGGATCAACTCCTTCCTGACACCACCTTCCTTACTGAGCTCAGAGCAGACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100785.7
ENSMUST00000200786.2
ENSMUST00000201172.2
CDS CCA 90 bp CTCTGCACCTCAAACTTGAGTTTACATGGCTTCTCTTGCTGCAACTaGAGCAGGTGTTTCCGAATTTCTTCAATGAACACTTGCTGCCAC +
Preference number: 5 (lower is better)
Translates to: LCTSNLSLHGFSCCN*SRCFRISSMNTCCH
Trigger: GTGGCAGCAAGTGTTCATTGAAGAAATTCGGAAACACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS GCA 90 bp TCCTCTGAGCTCTGCACCTCAAACTTGAGTTTACATGGCTTCTCTTaGTGCAACTGGAGCAGGTGTTTCCGAATTTCTTCAATGAACACT +
Preference number: 5 (lower is better)
Translates to: SSELCTSNLSLHGFS*CNWSRCFRISSMNT
Trigger: AGTGTTCATTGAAGAAATTCGGAAACACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGAGCTCAGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS GCA 90 bp TGCAACTGGAGCAGGTGTTTCCGAATTTCTTCAATGAACACTTGCTaGCACTTTAACTGGTCCTCAAAGCTGGTGAGATCATTAAAGAAC +
Preference number: 5 (lower is better)
Translates to: CNWSRCFRISSMNTC*HFNWSSKLVRSLKN
Trigger: GTTCTTTAATGATCTCACCAGCTTTGAGGACCAGTTAAAGTGGCAGCAAGTGTTCATTGAAGAAATTCGGAAACACCTGCTCCAGTTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS TCA 72 bp ATTCCACCTCCTGCTGGCGCTCTGGGGAGCACAGCTTaGAGGTCAGAGACCTGGTGTTGGGCTCCTCTGAGC +
Preference number: 6 (lower is better)
Translates to: IPPPAGALGSTA*RSETWCWAPLS
Trigger: GCTCAGAGGAGCCCAACACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAGAGCGCCAGCAGGAGGTGGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CAA 72 bp AATTCCACCTCCTGCTGGCGCTCTGGGGAGCACAGCTaGAAGGTCAGAGACCTGGTGTTGGGCTCCTCTGAG +
Preference number: 6 (lower is better)
Translates to: NSTSCWRSGEHS*KVRDLVLGSSE
Trigger: CTCAGAGGAGCCCAACACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAGAGCGCCAGCAGGAGGTGGAATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CAA 90 bp TGCACATCAAATTCCACCTCCTGCTGGCGCTCTGGGGAGCACAGCTaGAAGGTCAGAGACCTGGTGTTGGGCTCCTCTGAGCTCTGCACC +
Preference number: 6 (lower is better)
Translates to: CTSNSTSCWRSGEHS*KVRDLVLGSSELCT
Trigger: GGTGCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAGAGCGCCAGCAGGAGGTGGAATTTGATGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS TCA 72 bp GCGCACGATACCTCAGGAAGCTCTGATGAAGGTCGGTaGAGCAGATGGAGAACTCGCCCTCCTTCTCCAGGG +
Preference number: 6 (lower is better)
Translates to: AHDTSGSSDEGR*SRWRTRPPSPG
Trigger: CCCTGGAGAAGGAGGGCGAGTTCTCCATCTGCTTCACCGACCTTCATCAGAGCTTCCTGAGGTATCGTGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CAA 90 bp GCCTCCCATCACAACCCTGGCGACCCTCATAGGGTGGGTGGCACCTaGGAAGCATCTCTCCTTCAGGAAAGCACTTATGGAGTCGATGTC +
Preference number: 6 (lower is better)
Translates to: ASHHNPGDPHRVGGT*EASLLQESTYGVDV
Trigger: GACATCGACTCCATAAGTGCTTTCCTGAAGGAGAGATGCTTCCAAGGTGCCACCCACCCTATGAGGGTCGCCAGGGTTGTGATGGGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CAA 72 bp TCTGGGGAGCACAGCTTGAAGGTCAGAGACCTGGTGTaGGGCTCCTCTGAGCTCTGCACCTCAAACTTGAGT +
Preference number: 6 (lower is better)
Translates to: SGEHSLKVRDLV*GSSELCTSNLS
Trigger: ACTCAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGACCTTCAAGCTGTGCTCCCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CCA 72 bp CTTGCAGTATCCCCCTTCATACAGAGCATCATAGGCTaGCTGCACATCAAATTCCACCTCCTGCTGGCGCTC +
Preference number: 6 (lower is better)
Translates to: LAVSPFIQSIIG*LHIKFHLLLAL
Trigger: GAGCGCCAGCAGGAGGTGGAATTTGATGTGCAGCCAGCCTATGATGCTCTGTATGAAGGGGGATACTGCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CAA 90 bp CTTCATCATCACAACCCTGGCGACCCTCATAGGGTGGGTGGCACCTaGGAAGCATCTCTCCTTCAGGAAAGCACTTATGGAGTCGATGTC +
Preference number: 6 (lower is better)
Translates to: LHHHNPGDPHRVGGT*EASLLQESTYGVDV
Trigger: GACATCGACTCCATAAGTGCTTTCCTGAAGGAGAGATGCTTCCAAGGTGCCACCCACCCTATGAGGGTCGCCAGGGTTGTGATGATGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200786.2
CDS CAA 72 bp CTGGTGTTGGGCTCCTCTGAGCTCTGCACCTCAAACTaGAGTTTACATGGCTTCTCTTGCTGCAACTGGAGC +
Preference number: 6 (lower is better)
Translates to: LVLGSSELCTSN*SLHGFSCCNWS
Trigger: GCTCCAGTTGCAGCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CAA 90 bp GTCAGAGACCTGGTGTTGGGCTCCTCTGAGCTCTGCACCTCAAACTaGAGTTTACATGGCTTCTCTTGCTGCAACTGGAGCAGGTGTTTC +
Preference number: 6 (lower is better)
Translates to: VRDLVLGSSELCTSN*SLHGFSCCNWSRCF
Trigger: GAAACACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS TCA 72 bp CAGCTTGAAGGTCAGAGACCTGGTGTTGGGCTCCTCTaGGCTCTGCACCTCAAACTTGAGTTTACATGGCTT +
Preference number: 6 (lower is better)
Translates to: QLEGQRPGVGLL*ALHLKLEFTWL
Trigger: AAGCCATGTAAACTCAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGACCTTCAAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS GCA 72 bp AAGGTCAGAGACCTGGTGTTGGGCTCCTCTGAGCTCTaGACCTCAAACTTGAGTTTACATGGCTTCTCTTGC +
Preference number: 6 (lower is better)
Translates to: KVRDLVLGSSEL*TSNLSLHGFSC
Trigger: GCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGAGCTCAGAGGAGCCCAACACCAGGTCTCTGACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CAA 90 bp GGAGAACTCGCCCTCCTTCTCCAGGGTGGTGCACTCATGGATGAGTaGGGCGTAGACTTTGTTGTAGTTAATGGATTCAAAGGACTTGCA +
Preference number: 6 (lower is better)
Translates to: GELALLLQGGALMDE*GVDFVVVNGFKGLA
Trigger: TGCAAGTCCTTTGAATCCATTAACTACAACAAAGTCTACGCCCAACTCATCCATGAGTGCACCACCCTGGAGAAGGAGGGCGAGTTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100785.7
ENSMUST00000200786.2
ENSMUST00000201172.2
CDS TCA 72 bp CTGAGCTCAGTAAGGAAGGTGGTGTCAGGAAGGAGTTaGTCCTCTATGAAGTTATCCAGCCTCCAGATTGGG +
Preference number: 6 (lower is better)
Translates to: LSSVRKVVSGRS*SSMKLSSLQIG
Trigger: CCCAATCTGGAGGCTGGATAACTTCATAGAGGATCAACTCCTTCCTGACACCACCTTCCTTACTGAGCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100785.7
ENSMUST00000200786.2
ENSMUST00000201172.2
CDS CAA 90 bp GATGTCTGCTCTGAGCTCAGTAAGGAAGGTGGTGTCAGGAAGGAGTaGATCCTCTATGAAGTTATCCAGCCTCCAGATTGGGGTTCTGAA +
Preference number: 6 (lower is better)
Translates to: DVCSELSKEGGVRKE*ILYEVIQPPDWGSE
Trigger: TTCAGAACCCCAATCTGGAGGCTGGATAACTTCATAGAGGATCAACTCCTTCCTGACACCACCTTCCTTACTGAGCTCAGAGCAGACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100785.7
ENSMUST00000200786.2
ENSMUST00000201172.2
CDS CAA 72 bp TCTGAGCTCAGTAAGGAAGGTGGTGTCAGGAAGGAGTaGATCCTCTATGAAGTTATCCAGCCTCCAGATTGG +
Preference number: 6 (lower is better)
Translates to: SELSKEGGVRKE*ILYEVIQPPDW
Trigger: CCAATCTGGAGGCTGGATAACTTCATAGAGGATCAACTCCTTCCTGACACCACCTTCCTTACTGAGCTCAGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100785.7
ENSMUST00000200786.2
ENSMUST00000201172.2
CDS CAA 72 bp GCCCTCCTTCTCCAGGGTGGTGCACTCATGGATGAGTaGGGCGTAGACTTTGTTGTAGTTAATGGATTCAAA +
Preference number: 6 (lower is better)
Translates to: ALLLQGGALMDE*GVDFVVVNGFK
Trigger: TTTGAATCCATTAACTACAACAAAGTCTACGCCCAACTCATCCATGAGTGCACCACCCTGGAGAAGGAGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100785.7
ENSMUST00000200786.2
ENSMUST00000201172.2
CDS TCA 72 bp GCTGCAACTGGAGCAGGTGTTTCCGAATTTCTTCAATaGACACTTGCTGCCACTTTAACTGGTCCTCAAAGC +
Preference number: 6 (lower is better)
Translates to: AATGAGVSEFLQ*TLAATLTGPQS
Trigger: GCTTTGAGGACCAGTTAAAGTGGCAGCAAGTGTTCATTGAAGAAATTCGGAAACACCTGCTCCAGTTGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CAA 72 bp GCTCTGCACCTCAAACTTGAGTTTACATGGCTTCTCTaGCTGCAACTGGAGCAGGTGTTTCCGAATTTCTTC +
Preference number: 6 (lower is better)
Translates to: ALHLKLEFTWLL*LQLEQVFPNFF
Trigger: GAAGAAATTCGGAAACACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS GCA 72 bp TGGAGCAGGTGTTTCCGAATTTCTTCAATGAACACTTaGTGCCACTTTAACTGGTCCTCAAAGCTGGTGAGA +
Preference number: 6 (lower is better)
Translates to: WSRCFRISSMNT*CHFNWSSKLVR
Trigger: TCTCACCAGCTTTGAGGACCAGTTAAAGTGGCAGCAAGTGTTCATTGAAGAAATTCGGAAACACCTGCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS GCA 72 bp CTCTGCACCTCAAACTTGAGTTTACATGGCTTCTCTTaGTGCAACTGGAGCAGGTGTTTCCGAATTTCTTCA +
Preference number: 6 (lower is better)
Translates to: LCTSNLSLHGFS*CNWSRCFRISS
Trigger: TGAAGAAATTCGGAAACACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS GCA 72 bp AGCAGGTGTTTCCGAATTTCTTCAATGAACACTTGCTaGCACTTTAACTGGTCCTCAAAGCTGGTGAGATCA +
Preference number: 6 (lower is better)
Translates to: SRCFRISSMNTC*HFNWSSKLVRS
Trigger: TGATCTCACCAGCTTTGAGGACCAGTTAAAGTGGCAGCAAGTGTTCATTGAAGAAATTCGGAAACACCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS GCA 72 bp TGCACCTCAAACTTGAGTTTACATGGCTTCTCTTGCTaGAACTGGAGCAGGTGTTTCCGAATTTCTTCAATG +
Preference number: 6 (lower is better)
Translates to: CTSNLSLHGFSC*NWSRCFRISSM
Trigger: CATTGAAGAAATTCGGAAACACCTGCTCCAGTTGCAGCAAGAGAAGCCATGTAAACTCAAGTTTGAGGTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2
CDS CCA 72 bp CGAATTTCTTCAATGAACACTTGCTGCCACTTTAACTaGTCCTCAAAGCTGGTGAGATCATTAAAGAACACC +
Preference number: 6 (lower is better)
Translates to: RISSMNTCCHFN*SSKLVRSLKNT
Trigger: GGTGTTCTTTAATGATCTCACCAGCTTTGAGGACCAGTTAAAGTGGCAGCAAGTGTTCATTGAAGAAATTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100785.7
ENSMUST00000201172.2