Pregenerated sensors for OARD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040771Ensembl transcript IDs: ENSMUST00000046651.7, ENSMUST00000167180.8, ENSMUST00000233426.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGACCTCACCTCCTGCTTGGGTGCAGTGCCCTCCCTATCCTCTTaGAGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCA | + |
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Preference number: 1 (lower is better) Translates to: TDLTSCLGAVPSLSS*STETHIWPRRDSLS Trigger: TGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACTCCAAGAGGATAGGGAGGGCACTGCACCCAAGCAGGAGGTGAGGTCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR CAA 90 bp | AAACCCACATCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTaGCCCATTCTGAGGTCCTACAGCTGCTTAGTCCCACAGCTTCGT | + |
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Preference number: 2 (lower is better) Translates to: KPTSGLGETPSHRLS*PILRSYSCLVPQLR Trigger: ACGAAGCTGTGGGACTAAGCAGCTGTAGGACCTCAGAATGGGCAAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGTGGCCAGCCAAACAAATCCAGTAGTGGCTAAGCAAAGCAGGTCCTACACTACCTCACCTCCTGCTTaGGTGCAGTGCCCTCCCTAT | + |
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Preference number: 2 (lower is better) Translates to: PVASQTNPVVAKQSRSYTTSPPA*VQCPPY Trigger: ATAGGGAGGGCACTGCACCCAAGCAGGAGGTGAGGT...AGTGTAGGACCTGCTTTGCTTAGCCACTACTGGATTTGTTTGGCTGGCCACTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR-3UTR CCA 90 bp | CACCCAGTGGCCAGCCAAACAAATCCAGTAGTGGCTAAGCAAAGCAGGTCCTACCCCTCCCTATCCTCTTaGAGTACAGAAACCCACATC | + |
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Preference number: 2 (lower is better) Translates to: HPVASQTNPVVAKQSRSYPSLSS*STETHI Trigger: GATGTGGGTTTCTGTACTCCAAGAGGATAGGGAGGG...GTAGGACCTGCTTTGCTTAGCCACTACTGGATTTGTTTGGCTGGCCACTGGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR CCA 72 bp | ACCTCCTGCTTGGGTGCAGTGCCCTCCCTATCCTCTTaGAGTACAGAAACCCACATCTGGCCTAGGAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: TSCLGAVPSLSS*STETHIWPRRD Trigger: GTCTCTCCTAGGCCAGATGTGGGTTTCTGTACTCCAAGAGGATAGGGAGGGCACTGCACCCAAGCAGGAGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR GCA 72 bp | TTCCTGCCTAGTGACAGACCTCACCTCCTGCTTGGGTaGAGTGCCCTCCCTATCCTCTTGGAGTACAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: FLPSDRPHLLLG*SALPILLEYRN Trigger: GTTTCTGTACTCCAAGAGGATAGGGAGGGCACTGCACCCAAGCAGGAGGTGAGGTCTGTCACTAGGCAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR CCA 72 bp | CCCTCCCTATCCTCTTGGAGTACAGAAACCCACATCTaGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: PSLSSWSTETHI*PRRDSLSQTVL Trigger: AAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACTCCAAGAGGATAGGGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR-3UTR CAA 90 bp | CACCCAGTGGCCAGCCAAACAAATCCAGTAGTGGCTAAGCAAAGCAGGTCCTACGCCCTCCCTATCCTCTaGGAGTACAGAAACCCACAT | + |
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Preference number: 3 (lower is better) Translates to: HPVASQTNPVVAKQSRSYALPIL*EYRNPH Trigger: ATGTGGGTTTCTGTACTCCAAGAGGATAGGGAGGGC...GTAGGACCTGCTTTGCTTAGCCACTACTGGATTTGTTTGGCTGGCCACTGGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR CAA 72 bp | TCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTaGCCCATTCTGAGGTCCTACAGCTGCTTAGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: SGLGETPSHRLS*PILRSYSCLVP Trigger: TGGGACTAAGCAGCTGTAGGACCTCAGAATGGGCAAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR TCA 90 bp | TCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTGCCCATTCTGAGGTCCGCATGGAGAGGTCAGTaGCGCCATTCTTCAAACAAT | + |
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Preference number: 4 (lower is better) Translates to: SGLGETPSHRLSLPILRSAWRGQ*RHSSNN Trigger: ATTGTTTGAAGAATGGCGTCACTGACCTCTCCATGC...GGACCTCAGAATGGGCAAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR TCA 90 bp | AAACCCACATCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTGCCCATTTTCGACAATCCTCACTaGTACAATGGGCTAGAGAGT | + |
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Preference number: 4 (lower is better) Translates to: KPTSGLGETPSHRLSLPIFDNPH*YNGLES Trigger: ACTCTCTAGCCCATTGTATCAGTGAGGATTGTCGAA...AATGGGCAAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR TCA 90 bp | CCAGTGGCCAGCCAAACAAATCCAGTAGTGGCTAAGCAAAGCAGGTCCTACACTGCATGGAGAGGTCAGTaGCGCCATTCTTCAAACAAT | + |
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Preference number: 4 (lower is better) Translates to: PVASQTNPVVAKQSRSYTAWRGQ*RHSSNN Trigger: ATTGTTTGAAGAATGGCGTCACTGACCTCTCCATGC...AGTGTAGGACCTGCTTTGCTTAGCCACTACTGGATTTGTTTGGCTGGCCACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR GCA 90 bp | AGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTGATACATTTTCCCACTaGAGCCGATCCAGACCACAT | + |
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Preference number: 4 (lower is better) Translates to: STETHIWPRRDSLSQTVLDTFSH*SRSRPH Trigger: ATGTGGTCTGGATCGGCTGCAGTGGGAAAATGTATC...AAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CCA 90 bp | CACCCAGTGGCCAGCCAAACAAATCCAGTAGTGGCTAAGCAAAGCAGGTCCTACGATTCGACTTCCTTCTaGATCTTCATTAAGGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: HPVASQTNPVVAKQSRSYDSTSF*IFIKAG Trigger: ACCCGCCTTAATGAAGATCCAGAAGGAAGTCGAATC...GTAGGACCTGCTTTGCTTAGCCACTACTGGATTTGTTTGGCTGGCCACTGGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR GCA 90 bp | CACCCAGTGGCCAGCCAAACAAATCCAGTAGTGGCTAAGCAAAGCAGGTCCTACGTCTGTTTTGGGACATaGGAAAAGATCTCCTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: HPVASQTNPVVAKQSRSYVCFGT*EKISFH Trigger: GTGAAAGGAGATCTTTTCGCATGTCCCAAAACAGAC...GTAGGACCTGCTTTGCTTAGCCACTACTGGATTTGTTTGGCTGGCCACTGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CCA 90 bp | CTATCCTCTTGGAGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCAGATTCGACTTCCTTCTaGATCTTCATTAAGGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: LSSWSTETHIWPRRDSLSDSTSF*IFIKAG Trigger: ACCCGCCTTAATGAAGATCCAGAAGGAAGTCGAATC...TGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACTCCAAGAGGATAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CCA 90 bp | AAACCCACATCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTGCCCATTTCCTCACTGATACAATaGGCTAGAGAGTCTGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: KPTSGLGETPSHRLSLPISSLIQ*ARESVL Trigger: CAAAACAGACTCTCTAGCCCATTGTATCAGTGAGGA...AATGGGCAAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CCA 90 bp | CACCCAGTGGCCAGCCAAACAAATCCAGTAGTGGCTAAGCAAAGCAGGTCCTACCCATTCTTCAAACAATaGGACTTCATGGCCTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: HPVASQTNPVVAKQSRSYPFFKQ*DFMASK Trigger: TTTGGAGGCCATGAAGTCCCATTGTTTGAAGAATGG...GTAGGACCTGCTTTGCTTAGCCACTACTGGATTTGTTTGGCTGGCCACTGGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR TCA 90 bp | AGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTATACGTTGGCTTGTGTaGAGCCCGTTTCTTTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: STETHIWPRRDSLSQTVLIRWLV*SPFLCN Trigger: ATTACAAAGAAACGGGCTTCACACAAGCCAACGTAT...AAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR TCA 90 bp | CTATCCTCTTGGAGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCAATACGTTGGCTTGTGTaGAGCCCGTTTCTTTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: LSSWSTETHIWPRRDSLSIRWLV*SPFLCN Trigger: ATTACAAAGAAACGGGCTTCACACAAGCCAACGTAT...TGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACTCCAAGAGGATAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR GCA 90 bp | AGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTGTCTGTTTTGGGACATaGGAAAAGATCTCCTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: STETHIWPRRDSLSQTVLVCFGT*EKISFH Trigger: GTGAAAGGAGATCTTTTCGCATGTCCCAAAACAGAC...AAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR TCA 90 bp | CCAGTGGCCAGCCAAACAAATCCAGTAGTGGCTAAGCAAAGCAGGTCCTACACTAATTTTGATGTCTGTTaGCTCAAACACCTCTTCGAG | + |
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Preference number: 4 (lower is better) Translates to: PVASQTNPVVAKQSRSYTNFDVC*LKHLFE Trigger: CTCGAAGAGGTGTTTGAGTCAACAGACATCAAAATT...AGTGTAGGACCTGCTTTGCTTAGCCACTACTGGATTTGTTTGGCTGGCCACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CCA 90 bp | CAAAAGAAAATTAGAACCTATGCTGCCACCCAGTGGCCAGCCAAACAAATCCAGTCCTCACTGATACAATaGGCTAGAGAGTCTGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: QKKIRTYAATQWPAKQIQSSLIQ*ARESVL Trigger: CAAAACAGACTCTCTAGCCCATTGTATCAGTGAGGA...CTGGATTTGTTTGGCTGGCCACTGGGTGGCAGCATAGGTTCTAATTTTCTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CCA 90 bp | ATTTCTCTTCAAAAGAAAATTAGAACCTATGCTGCCACCCAGTGGCCAGCCAAAAACAATGGGACTTCATaGCCTCCAAACTCTTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: ISLQKKIRTYAATQWPAKNNGTS*PPNSSV Trigger: TACAGAAGAGTTTGGAGGCCATGAAGTCCCATTGTT...TTTGGCTGGCCACTGGGTGGCAGCATAGGTTCTAATTTTCTTTTGAAGAGAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CCA 90 bp | ATTTCTCTTCAAAAGAAAATTAGAACCTATGCTGCCACCCAGTGGCCAGCCAAACCATTCTTCAAACAATaGGACTTCATGGCCTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: ISLQKKIRTYAATQWPAKPFFKQ*DFMASK Trigger: TTTGGAGGCCATGAAGTCCCATTGTTTGAAGAATGG...TTTGGCTGGCCACTGGGTGGCAGCATAGGTTCTAATTTTCTTTTGAAGAGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR TCA 90 bp | ATTTCTCTTCAAAAGAAAATTAGAACCTATGCTGCCACCCAGTGGCCAGCCAAAAATTTTGATGTCTGTTaGCTCAAACACCTCTTCGAG | + |
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Preference number: 4 (lower is better) Translates to: ISLQKKIRTYAATQWPAKNFDVC*LKHLFE Trigger: CTCGAAGAGGTGTTTGAGTCAACAGACATCAAAATT...TTTGGCTGGCCACTGGGTGGCAGCATAGGTTCTAATTTTCTTTTGAAGAGAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| 3UTR CAA 72 bp | TCAGTGAACACAAGGGAAACGTTTATTGTTCCACTCTaGACACATTGTGATGTCATAACTAAAAACCATAAT | + |
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Preference number: 4 (lower is better) Translates to: SVNTRETFIVPL*THCDVITKNHN Trigger: ATTATGGTTTTTAGTTATGACATCACAATGTGTCAAGAGTGGAACAATAAACGTTTCCCTTGTGTTCACTGA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046651.7 |
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| CDS-3UTR CAA 90 bp | TCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTGCCCATTCTGAGGTCCGCTAGAGAGTCTGTTTaGGGACATGCGAAAAGATCT | + |
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Preference number: 5 (lower is better) Translates to: SGLGETPSHRLSLPILRSARESV*GHAKRS Trigger: AGATCTTTTCGCATGTCCCAAAACAGACTCTCTAGC...GGACCTCAGAATGGGCAAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS GCA 90 bp | GTTGACTCAAACACCTCTTCGAGAATCGCAGATACATTTTCCCACTaGAGCCGATCCAGACCACATCCAATCCTGGGCATGGAGAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: VDSNTSSRIADTFSH*SRSRPHPILGMERS Trigger: TGACCTCTCCATGCCCAGGATTGGATGTGGTCTGGATCGGCTGCAGTGGGAAAATGTATCTGCGATTCTCGAAGAGGTGTTTGAGTCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CAA 90 bp | AGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTGCTAGAGAGTCTGTTTaGGGACATGCGAAAAGATCT | + |
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Preference number: 5 (lower is better) Translates to: STETHIWPRRDSLSQTVLARESV*GHAKRS Trigger: AGATCTTTTCGCATGTCCCAAAACAGACTCTCTAGC...AAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CAA 90 bp | AGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCACAGACTGTCCTTCCTCCGAATCTCTTCTaGAAGAGAACAGCTATTCCA | + |
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Preference number: 5 (lower is better) Translates to: STETHIWPRRDSLSQTVLPPNLF*KRTAIP Trigger: TGGAATAGCTGTTCTCTTCAAGAAGAGATTCGGAGG...AAGGACAGTCTGTGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS CCA 90 bp | AGAACAGCTATTCCAGCACCCATTCGACAATCCTCACTGATACAATaGGCTAGAGAGTCTGTTTTGGGACATGCGAAAAGATCTCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: RTAIPAPIRQSSLIQ*ARESVLGHAKRSPF Trigger: GAAAGGAGATCTTTTCGCATGTCCCAAAACAGACTCTCTAGCCCATTGTATCAGTGAGGATTGTCGAATGGGTGCTGGAATAGCTGTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 ENSMUST00000233426.2 |
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| CDS-3UTR CAA 90 bp | CTATCCTCTTGGAGTACAGAAACCCACATCTGGCCTAGGAGAGACTCCCTCTCAGTGTACACAGTAATTTaGATGTCTGTTGACTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: LSSWSTETHIWPRRDSLSVYTVI*MSVDSN Trigger: GTTTGAGTCAACAGACATCAAAATTACTGTGTACAC...TGAGAGGGAGTCTCTCCTAGGCCAGATGTGGGTTTCTGTACTCCAAGAGGATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS-3UTR CAA 90 bp | ATTTCTCTTCAAAAGAAAATTAGAACCTATGCTGCCACCCAGTGGCCAGCCAAAGTGTACACAGTAATTTaGATGTCTGTTGACTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: ISLQKKIRTYAATQWPAKVYTVI*MSVDSN Trigger: GTTTGAGTCAACAGACATCAAAATTACTGTGTACAC...TTTGGCTGGCCACTGGGTGGCAGCATAGGTTCTAATTTTCTTTTGAAGAGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS TCA 72 bp | CCAGACCACATCCAATCCTGGGCATGGAGAGGTCAGTaGCGCCATTCTTCAAACAATGGGACTTCATGGCCT | + |
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Preference number: 6 (lower is better) Translates to: PDHIQSWAWRGQ*RHSSNNGTSWP Trigger: AGGCCATGAAGTCCCATTGTTTGAAGAATGGCGTCACTGACCTCTCCATGCCCAGGATTGGATGTGGTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 |
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| CDS TCA 72 bp | GAACAGCTATTCCAGCACCCATTCGACAATCCTCACTaGTACAATGGGCTAGAGAGTCTGTTTTGGGACATG | + |
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Preference number: 6 (lower is better) Translates to: EQLFQHPFDNPH*YNGLESLFWDM Trigger: CATGTCCCAAAACAGACTCTCTAGCCCATTGTATCAGTGAGGATTGTCGAATGGGTGCTGGAATAGCTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 ENSMUST00000233426.2 |
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| CDS TCA 72 bp | GACTTAACAGTTCCTGCACCCCTCCGAATCTCTTCTTaGAGAGAACAGCTATTCCAGCACCCATTCGACAAT | + |
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Preference number: 6 (lower is better) Translates to: DLTVPAPLRISS*REQLFQHPFDN Trigger: ATTGTCGAATGGGTGCTGGAATAGCTGTTCTCTTCAAGAAGAGATTCGGAGGGGTGCAGGAACTGTTAAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046651.7 ENSMUST00000167180.8 ENSMUST00000233426.2 |
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