Pregenerated sensors for NXT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042271Ensembl transcript IDs: ENSMUST00000042329.12, ENSMUST00000112913.2, ENSMUST00000112914.8, ENSMUST00000112916.9
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGAAACTTaGCTCCACTTCCAGGAGGTAGGGAACAGGTGTGCTCCCTCTTTT | + |
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Preference number: 1 (lower is better) Translates to: MARILRDSWDANPET*LHFQEVGNRCAPSF Trigger: AAAAGAGGGAGCACACCTGTTCCCTACCTCCTGGAAGTGGAGCCAAGTTTCAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR GCA 90 bp | CTAAACAATGGTTTAGTTCTGTTATTGCTAATTATACACAGATTTTaGGATTGTTCTCCACCAATAGAAAGGGCAGTGACTGGGCATTTT | + |
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Preference number: 1 (lower is better) Translates to: LNNGLVLLLLIIHRF*DCSPPIERAVTGHF Trigger: AAAATGCCCAGTCACTGCCCTTTCTATTGGTGGAGAACAATCGCAAAATCTGTGTATAATTAGCAATAACAGAACTAAACCATTGTTTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR TCA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGATCCAAACTGGCAGCTaGTCTAGCAAAGGCGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: QFLGPWQEFLETLGMQILIQTGS*SSKGAA Trigger: AGCAGCGCCTTTGCTAGATCAGCTGCCAGTTTGGAT...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR TCA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCAATCCAAACTGGCAGCTaGTCTAGCAAAGGCGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: SFCYHSHLSHKHIDLKPAIQTGS*SSKGAA Trigger: AGCAGCGCCTTTGCTAGATCAGCTGCCAGTTTGGAT...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR GCA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGGGTAGGGAACAGGTGTaGTCCCTCTTTTGGTGTTGG | + |
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Preference number: 2 (lower is better) Translates to: QFLGPWQEFLETLGMQILGREQV*SLFWCW Trigger: CCAACACCAAAAGAGGGAGCACACCTGTTCCCTACC...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR TCA 90 bp | GAAATTACCCTAGTAACTGAGACTATCCTACAGAGCTATCTTGTGCTATCCCATATCCAAACTGGCAGCTaGTCTAGCAAAGGCGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: EITLVTETILQSYLVLSHIQTGS*SSKGAA Trigger: AGCAGCGCCTTTGCTAGATCAGCTGCCAGTTTGGAT...ATGGGATAGCACAAGATAGCTCTGTAGGATAGTCTCAGTTACTAGGGTAATTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR GCA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGGGTAGGGAACAGGTGTaGTCCCTCTTTTGGTGTTGG | + |
|
Preference number: 2 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLGREQV*SLFWCW Trigger: CCAACACCAAAAGAGGGAGCACACCTGTTCCCTACC...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR GCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTGGTAGGGAACAGGTGTaGTCCCTCTTTTGGTGTTGG | + |
|
Preference number: 2 (lower is better) Translates to: CTETEHSFLSNSQIRRQSGREQV*SLFWCW Trigger: CCAACACCAAAAGAGGGAGCACACCTGTTCCCTACC...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR TCA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCAAAGGTTTCAGAGTTGTaGCTGCCATTAAATGCACCC | + |
|
Preference number: 2 (lower is better) Translates to: SFCYHSHLSHKHIDLKPAKVSEL*LPLNAP Trigger: GGGTGCATTTAATGGCAGTCACAACTCTGAAACCTT...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR TCA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGTTGGGATGCAAATCCTaGAACTTGGCTCCACTTCCA | + |
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Preference number: 2 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLLGCKS*NLAPLP Trigger: TGGAAGTGGAGCCAAGTTTCAGGATTTGCATCCCAA...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR TCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTTTGGGATGCAAATCCTaGAACTTGGCTCCACTTCCA | + |
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Preference number: 2 (lower is better) Translates to: CTETEHSFLSNSQIRRQSLGCKS*NLAPLP Trigger: TGGAAGTGGAGCCAAGTTTCAGGATTTGCATCCCAA...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR TCA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCAAATTACCCTAGTAACTaGGACTATCCTACAGAGCTA | + |
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Preference number: 2 (lower is better) Translates to: SFCYHSHLSHKHIDLKPANYPSN*DYPTEL Trigger: TAGCTCTGTAGGATAGTCTCAGTTACTAGGGTAATT...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR TCA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGTACTGGAGACAGGCATaGAGGGGAAGTAAAATAATC | + |
|
Preference number: 2 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLYWRQA*RGSKII Trigger: GATTATTTTACTTCCCCTTCATGCCTGTCTCCAGTA...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR CCA 72 bp | ATTCTTAGAGACTCTTGGGATGCAAATCCTGAAACTTaGCTCCACTTCCAGGAGGTAGGGAACAGGTGTGCT | + |
|
Preference number: 3 (lower is better) Translates to: ILRDSWDANPET*LHFQEVGNRCA Trigger: AGCACACCTGTTCCCTACCTCCTGGAAGTGGAGCCAAGTTTCAGGATTTGCATCCCAAGAGTCTCTAAGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR CAA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGGGTGTGCTCCCTCTTTaGGTGTTGGCTTCAGCCTTA | + |
|
Preference number: 3 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLGVLPL*VLASAL Trigger: TAAGGCTGAAGCCAACACCAAAAGAGGGAGCACACC...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR CAA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTGGTGTGCTCCCTCTTTaGGTGTTGGCTTCAGCCTTA | + |
|
Preference number: 3 (lower is better) Translates to: CTETEHSFLSNSQIRRQSGVLPL*VLASAL Trigger: TAAGGCTGAAGCCAACACCAAAAGAGGGAGCACACC...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR CCA 72 bp | GTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTaGGATGCAAATCCTGAAACTTGGCTCCACTTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: VFRTMARILRDS*DANPETWLHFQ Trigger: CTGGAAGTGGAGCCAAGTTTCAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR CAA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGCAGGCATGTGCTTCATaGAGAAATTACCCTAGTAAC | + |
|
Preference number: 3 (lower is better) Translates to: QFLGPWQEFLETLGMQILQACAS*RNYPSN Trigger: GTTACTAGGGTAATTTCTCAATGAAGCACATGCCTG...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR-3UTR CAA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGCAGGCATGTGCTTCATaGAGAAATTACCCTAGTAAC | + |
|
Preference number: 3 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLQACAS*RNYPSN Trigger: GTTACTAGGGTAATTTCTCAATGAAGCACATGCCTG...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR GCA 72 bp | CGAACAAAAGGTTTCAGAGTTGTGACTGCCATTAAATaGACCCGATATACAAGTATCAGTCGAGAACATTTT | + |
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Preference number: 3 (lower is better) Translates to: RTKGFRVVTAIK*TRYTSISREHF Trigger: AAAATGTTCTCGACTGATACTTGTATATCGGGTGCATTTAATGGCAGTCACAACTCTGAAACCTTTTGTTCG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCAGGGCTGGAAATGGTCTaGTCCAGAGCTGGCCCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: SFCYHSHLSHKHIDLKPAGLEMV*SRAGPG Trigger: TCCGGGGCCAGCTCTGGAGCAGACCATTTCCAGCCC...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGTCAGGGGGCTGGAAATaGTCTGCTCCAGAGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLSGGWK*SAPELA Trigger: GGCCAGCTCTGGAGCAGACCATTTCCAGCCCCCTGA...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGCTGTTAGGAGTGCTCTaGGCAGTCAGCAGGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: QFLGPWQEFLETLGMQILLLGVL*AVSRKF Trigger: GAACTTCCTGCTGACTGCGCAGAGCACTCCTAACAG...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGCTGTTAGGAGTGCTCTaGGCAGTCAGCAGGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLLLGVL*AVSRKF Trigger: GAACTTCCTGCTGACTGCGCAGAGCACTCCTAACAG...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTCTGTTAGGAGTGCTCTaGGCAGTCAGCAGGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: CTETEHSFLSNSQIRRQSLLGVL*AVSRKF Trigger: GAACTTCCTGCTGACTGCGCAGAGCACTCCTAACAG...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCAACGAGCACTGTAGTTTaGCACTGGGTAGCTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SFCYHSHLSHKHIDLKPATSTVV*HWVACS Trigger: TGAGCAAGCTACCCAGTGCCAAACTACAGTGCTCGT...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTACGAGCACTGTAGTTTaGCACTGGGTAGCTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: CTETEHSFLSNSQIRRQSTSTVV*HWVACS Trigger: TGAGCAAGCTACCCAGTGCCAAACTACAGTGCTCGT...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR CAA 72 bp | ATGCGCATGGTAGGTAATACATTGGAGGCTTGGGGCTaGAAGTTGATATGGAAGAATTTGGAGTTCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: MRMVGNTLEAWG*KLIWKNLEFSM Trigger: CATGCTGAACTCCAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCATGCGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR TCA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCATGTCCAAATACAGCCTaGCAAGTGCATGTCGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SFCYHSHLSHKHIDLKPACPNTA*QVHVVF Trigger: AAAGACGACATGCACTTGTCAGGCTGTATTTGGACA...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGCTCGGCAGCTCTACATaGCTGATCCACATAAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: QFLGPWQEFLETLGMQILLGSST*LIHISF Trigger: AAAACTTATGTGGATCAGGCATGTAGAGCTGCCGAG...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000042329.12 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGGTCAGCAGGAAGTTCTaGTTAAAGAAGTGCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: QFLGPWQEFLETLGMQILVSRKF*LKKCCL Trigger: CAAGCAGCACTTCTTTAACCAGAACTTCCTGCTGAC...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR TCA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGGGCAATCTAACATATTaGTCTGGAATTCGCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: QFLGPWQEFLETLGMQILGNLTY*SGIRWK Trigger: CTTCCAGCGAATTCCAGATCAATATGTTAGATTGCC...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR TCA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCAGGCAATCTAACATATTaGTCTGGAATTCGCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SFCYHSHLSHKHIDLKPAGNLTY*SGIRWK Trigger: CTTCCAGCGAATTCCAGATCAATATGTTAGATTGCC...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTCTCGGCAGCTCTACATaGCTGATCCACATAAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: CTETEHSFLSNSQIRRQSLGSST*LIHISF Trigger: AAAACTTATGTGGATCAGGCATGTAGAGCTGCCGAG...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042329.12 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | TGCACGAAATATATTAATTCTCCTCTAACTTCTCTTGCTGGAACTAATGGACCAACGAGCACTGTAGTTTaGCACTGGGTAGCTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: CTKYINSPLTSLAGTNGPTSTVV*HWVACS Trigger: TGAGCAAGCTACCCAGTGCCAAACTACAGTGCTCGT...TGGTCCATTAGTTCCAGCAAGAGAAGTTAGAGGAGAATTAATATATTTCGTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGGTCAGCAGGAAGTTCTaGTTAAAGAAGTGCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLVSRKF*LKKCCL Trigger: CAAGCAGCACTTCTTTAACCAGAACTTCCTGCTGAC...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR CAA 72 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTaGATATGGAAGAATTTGGAGTTCAGCATGTACAGA | + |
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Preference number: 4 (lower is better) Translates to: MVGNTLEAWGLK*IWKNLEFSMYR Trigger: TCTGTACATGCTGAACTCCAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR TCA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGTCTCATAGTAAATATTaGCAAATTCCTCGGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: QFLGPWQEFLETLGMQILSHSKY*QIPRQL Trigger: GAGCTGCCGAGGAATTTGTCAATATTTACTATGAGA...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000042329.12 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR TCA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGGGCAATCTAACATATTaGTCTGGAATTCGCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLGNLTY*SGIRWK Trigger: CTTCCAGCGAATTCCAGATCAATATGTTAGATTGCC...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTGAGTTTCCAAAATGTTaGTCCCCATTGGACCAGTTA | + |
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Preference number: 4 (lower is better) Translates to: CTETEHSFLSNSQIRRQSEFPKC*SPLDQL Trigger: TAACTGGTCCAATGGGGACCAACATTTTGGAAACTC...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS-3UTR TCA 90 bp | GAAATTACCCTAGTAACTGAGACTATCCTACAGAGCTATCTTGTGCTATCCCATTCTCATAGTAAATATTaGCAAATTCCTCGGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: EITLVTETILQSYLVLSHSHSKY*QIPRQL Trigger: GAGCTGCCGAGGAATTTGTCAATATTTACTATGAGA...ATGGGATAGCACAAGATAGCTCTGTAGGATAGTCTCAGTTACTAGGGTAATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042329.12 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR TCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTTCTCATAGTAAATATTaGCAAATTCCTCGGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: CTETEHSFLSNSQIRRQSSHSKY*QIPRQL Trigger: GAGCTGCCGAGGAATTTGTCAATATTTACTATGAGA...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042329.12 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR TCA 90 bp | TGCACGAAATATATTAATTCTCCTCTAACTTCTCTTGCTGGAACTAATGGACCATGTCCAAATACAGCCTaGCAAGTGCATGTCGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: CTKYINSPLTSLAGTNGPCPNTA*QVHVVF Trigger: AAAGACGACATGCACTTGTCAGGCTGTATTTGGACA...TGGTCCATTAGTTCCAGCAAGAGAAGTTAGAGGAGAATTAATATATTTCGTGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | TGCACGAAATATATTAATTCTCCTCTAACTTCTCTTGCTGGAACTAATGGACCACTCGGCAGCTCTACATaGCTGATCCACATAAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: CTKYINSPLTSLAGTNGPLGSST*LIHISF Trigger: AAAACTTATGTGGATCAGGCATGTAGAGCTGCCGAG...TGGTCCATTAGTTCCAGCAAGAGAAGTTAGAGGAGAATTAATATATTTCGTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042329.12 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCATGGTTAAAGAAGTGCTaGTTGTTTCCATCAAACTTC | + |
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Preference number: 4 (lower is better) Translates to: SFCYHSHLSHKHIDLKPAWLKKC*LFPSNF Trigger: GAAGTTTGATGGAAACAAGCAGCACTTCTTTAACCA...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTTCTAACATATTGATCTaGAATTCGCTGGAAGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: CTETEHSFLSNSQIRRQSSNILI*NSLEGN Trigger: GTTGCCTTCCAGCGAATTCCAGATCAATATGTTAGA...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| 3UTR CAA 72 bp | GGAAGAAAATTATTCATGCGCATGGTAGGTAATACATaGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAAT | + |
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Preference number: 4 (lower is better) Translates to: GRKLFMRMVGNT*EAWGLKLIWKN Trigger: ATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCATGCGCATGAATAATTTTCTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTTGGTTAAAGAAGTGCTaGTTGTTTCCATCAAACTTC | + |
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Preference number: 4 (lower is better) Translates to: CTETEHSFLSNSQIRRQSWLKKC*LFPSNF Trigger: GAAGTTTGATGGAAACAAGCAGCACTTCTTTAACCA...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | GAAATTACCCTAGTAACTGAGACTATCCTACAGAGCTATCTTGTGCTATCCCATTTCTGGTTAAAGAAGTaGTGCTTGTTTCCATCAAAC | + |
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Preference number: 4 (lower is better) Translates to: EITLVTETILQSYLVLSHFWLKK*CLFPSN Trigger: GTTTGATGGAAACAAGCAGCACTTCTTTAACCAGAA...ATGGGATAGCACAAGATAGCTCTGTAGGATAGTCTCAGTTACTAGGGTAATTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CCA 90 bp | TGCACGAAATATATTAATTCTCCTCTAACTTCTCTTGCTGGAACTAATGGACCATCTAACATATTGATCTaGAATTCGCTGGAAGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: CTKYINSPLTSLAGTNGPSNILI*NSLEGN Trigger: GTTGCCTTCCAGCGAATTCCAGATCAATATGTTAGA...TGGTCCATTAGTTCCAGCAAGAGAAGTTAGAGGAGAATTAATATATTTCGTGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR GCA 90 bp | ATGTTTAATATTACCTTGAGAGTGTCAGTAGTGGAATGTATGCATAAGGCATGTTTCTGGTTAAAGAAGTaGTGCTTGTTTCCATCAAAC | + |
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Preference number: 4 (lower is better) Translates to: MFNITLRVSVVECMHKACFWLKK*CLFPSN Trigger: GTTTGATGGAAACAAGCAGCACTTCTTTAACCAGAA...ACATGCCTTATGCATACATTCCACTACTGACACTCTCAAGGTAATATTAAACAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | GAAATTACCCTAGTAACTGAGACTATCCTACAGAGCTATCTTGTGCTATCCCATTTGGCACTGGGTAGCTaGCTCATGAACTGGTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: EITLVTETILQSYLVLSHLALGS*LMNWLA Trigger: TGCCAACCAGTTCATGAGCAAGCTACCCAGTGCCAA...ATGGGATAGCACAAGATAGCTCTGTAGGATAGTCTCAGTTACTAGGGTAATTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTAACGAGCACTGTAGTTaGGCACTGGGTAGCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: CTETEHSFLSNSQIRRQSNEHCS*ALGSLL Trigger: GAGCAAGCTACCCAGTGCCAAACTACAGTGCTCGTT...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | ATGTTTAATATTACCTTGAGAGTGTCAGTAGTGGAATGTATGCATAAGGCATGTAACGAGCACTGTAGTTaGGCACTGGGTAGCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: MFNITLRVSVVECMHKACNEHCS*ALGSLL Trigger: GAGCAAGCTACCCAGTGCCAAACTACAGTGCTCGTT...ACATGCCTTATGCATACATTCCACTACTGACACTCTCAAGGTAATATTAAACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | TGTACAGAGACTGAGCATAGCTTTCTTTCGAATTCTCAGATTCGGAGACAAAGTGTATTTGTAGTTGATTaGTGGCTCCACCCAGGAACT | + |
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Preference number: 5 (lower is better) Translates to: CTETEHSFLSNSQIRRQSVFVVD*WLHPGT Trigger: AGTTCCTGGGTGGAGCCACAAATCAACTACAAATAC...ACTTTGTCTCCGAATCTGAGAATTCGAAAGAAAGCTATGCTCAGTCTCTGTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | CAGTTTTTAGGACCATGGCAAGAATTCTTAGAGACTCTTGGGATGCAAATCCTGTGGCAATCTAACATATaGATCTGGAATTCGCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: QFLGPWQEFLETLGMQILWQSNI*IWNSLE Trigger: TTCCAGCGAATTCCAGATCAATATGTTAGATTGCCA...CAGGATTTGCATCCCAAGAGTCTCTAAGAATTCTTGCCATGGTCCTAAAAACTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCATGGCAATCTAACATATaGATCTGGAATTCGCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: SFCYHSHLSHKHIDLKPAWQSNI*IWNSLE Trigger: TTCCAGCGAATTCCAGATCAATATGTTAGATTGCCA...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | GAAATTACCCTAGTAACTGAGACTATCCTACAGAGCTATCTTGTGCTATCCCATTGGCAATCTAACATATaGATCTGGAATTCGCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: EITLVTETILQSYLVLSHWQSNI*IWNSLE Trigger: TTCCAGCGAATTCCAGATCAATATGTTAGATTGCCA...ATGGGATAGCACAAGATAGCTCTGTAGGATAGTCTCAGTTACTAGGGTAATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | AGCTTCTGTTATCACTCCCATTTATCACATAAACACATTGACCTGAAGCCGGCATTAAAGAAGTGCTGCTaGTTTCCATCAAACTTCACA | + |
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Preference number: 5 (lower is better) Translates to: SFCYHSHLSHKHIDLKPALKKCC*FPSNFT Trigger: TGTGAAGTTTGATGGAAACAAGCAGCACTTCTTTAA...TGCCGGCTTCAGGTCAATGTGTTTATGTGATAAATGGGAGTGATAACAGAAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | ATGTTTAATATTACCTTGAGAGTGTCAGTAGTGGAATGTATGCATAAGGCATGTCGAGTTTCCAAAATGTaGGTCCCCATTGGACCAGTT | + |
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Preference number: 5 (lower is better) Translates to: MFNITLRVSVVECMHKACRVSKM*VPIGPV Trigger: AACTGGTCCAATGGGGACCAACATTTTGGAAACTCG...ACATGCCTTATGCATACATTCCACTACTGACACTCTCAAGGTAATATTAAACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | ATGGTAGGTAATACATTGGAGGCTTGGGGCTTGAAGTTGATATGGAAGAATTTGTTAAAGAAGTGCTGCTaGTTTCCATCAAACTTCACA | + |
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Preference number: 5 (lower is better) Translates to: MVGNTLEAWGLKLIWKNLLKKCC*FPSNFT Trigger: TGTGAAGTTTGATGGAAACAAGCAGCACTTCTTTAA...CAAATTCTTCCATATCAACTTCAAGCCCCAAGCCTCCAATGTATTACCTACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | ATGTTTAATATTACCTTGAGAGTGTCAGTAGTGGAATGTATGCATAAGGCATGTAAATGTTGGTCCCCATaGGACCAGTTACTTCGAAAT | + |
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Preference number: 5 (lower is better) Translates to: MFNITLRVSVVECMHKACKCWSP*DQLLRN Trigger: ATTTCGAAGTAACTGGTCCAATGGGGACCAACATTT...ACATGCCTTATGCATACATTCCACTACTGACACTCTCAAGGTAATATTAAACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | ATGTTTAATATTACCTTGAGAGTGTCAGTAGTGGAATGTATGCATAAGGCATGTTGGCAATCTAACATATaGATCTGGAATTCGCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: MFNITLRVSVVECMHKACWQSNI*IWNSLE Trigger: TTCCAGCGAATTCCAGATCAATATGTTAGATTGCCA...ACATGCCTTATGCATACATTCCACTACTGACACTCTCAAGGTAATATTAAACAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS-3UTR CAA 90 bp | ATGTTTAATATTACCTTGAGAGTGTCAGTAGTGGAATGTATGCATAAGGCATGTTTAAAGAAGTGCTGCTaGTTTCCATCAAACTTCACA | + |
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Preference number: 5 (lower is better) Translates to: MFNITLRVSVVECMHKACLKKCC*FPSNFT Trigger: TGTGAAGTTTGATGGAAACAAGCAGCACTTCTTTAA...ACATGCCTTATGCATACATTCCACTACTGACACTCTCAAGGTAATATTAAACAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS CAA 90 bp | AGCTGGCCCCGGAGATGTCCGCACTTCCGCGCTCGTCTGGGTCCTTaGGTATTTGTAGTTGATTTGTGGCTCCACCCAGGAACTGCCCGA | + |
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Preference number: 6 (lower is better) Translates to: SWPRRCPHFRARLGP*VFVVDLWLHPGTAR Trigger: TCGGGCAGTTCCTGGGTGGAGCCACAAATCAACTACAAATACCAAAGGACCCAGACGAGCGCGGAAGTGCGGACATCTCCGGGGCCAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS CAA 72 bp | CGGAGATGTCCGCACTTCCGCGCTCGTCTGGGTCCTTaGGTATTTGTAGTTGATTTGTGGCTCCACCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: RRCPHFRARLGP*VFVVDLWLHPG Trigger: TCCTGGGTGGAGCCACAAATCAACTACAAATACCAAAGGACCCAGACGAGCGCGGAAGTGCGGACATCTCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS TCA 72 bp | CTTCCGCGCTCGTCTGGGTCCTTTGGTATTTGTAGTTaGTTTGTGGCTCCACCCAGGAACTGCCCGAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: LPRSSGSFGICS*FVAPPRNCPSF Trigger: GAAACTCGGGCAGTTCCTGGGTGGAGCCACAAATCAACTACAAATACCAAAGGACCCAGACGAGCGCGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS CAA 72 bp | CGCGCTCGTCTGGGTCCTTTGGTATTTGTAGTTGATTaGTGGCTCCACCCAGGAACTGCCCGAGTTTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: RARLGPLVFVVD*WLHPGTARVSK Trigger: TTTGGAAACTCGGGCAGTTCCTGGGTGGAGCCACAAATCAACTACAAATACCAAAGGACCCAGACGAGCGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112916.9 |
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| CDS CCA 72 bp | CTGTTAGGAGTGCTCTGCGCAGTCAGCAGGAAGTTCTaGTTAAAGAAGTGCTGCTTGTTTCCATCAAACTTC | + |
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Preference number: 6 (lower is better) Translates to: LLGVLCAVSRKF*LKKCCLFPSNF Trigger: GAAGTTTGATGGAAACAAGCAGCACTTCTTTAACCAGAACTTCCTGCTGACTGCGCAGAGCACTCCTAACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000042329.12 ENSMUST00000112913.2 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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| CDS TCA 72 bp | CATGTCGTCTTTTGTCCATTGTCTCATAGTAAATATTaGCAAATTCCTCGGCAGCTCTACATGCCTGATCCA | + |
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Preference number: 6 (lower is better) Translates to: HVVFCPLSHSKY*QIPRQLYMPDP Trigger: TGGATCAGGCATGTAGAGCTGCCGAGGAATTTGTCAATATTTACTATGAGACAATGGACAAAAGACGACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042329.12 ENSMUST00000112914.8 ENSMUST00000112916.9 |
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