Pregenerated sensors for NXT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036992Ensembl transcript IDs: ENSMUST00000047177.4, ENSMUST00000109961.8
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAGAAAAGCAACATATTTATTTGTCAAGTTCCAGAAACAGGGTCTCTACTGAGTGTCCAACATCCAGTCTaGAGTGCTGCTGTGACAACA | + |
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Preference number: 2 (lower is better) Translates to: QKSNIFICQVPETGSLLSVQHPV*SAAVTT Trigger: TGTTGTCACAGCAGCACTGCAGACTGGATGTTGGAC...ACTCAGTAGAGACCCTGTTTCTGGAACTTGACAAATAAATATGTTGCTTTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| 3UTR-3UTR GCA 90 bp | CAGAAAAGCAACATATTTATTTGTCAAGTTCCAGAAACAGGGTCTCTACTGAGTTCCAGTCTGCAGTGCTaGTGTGACAACAAAAATGAA | + |
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Preference number: 2 (lower is better) Translates to: QKSNIFICQVPETGSLLSSSLQC*CDNKNE Trigger: TTCATTTTTGTTGTCACAGCAGCACTGCAGACTGGA...ACTCAGTAGAGACCCTGTTTCTGGAACTTGACAAATAAATATGTTGCTTTTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| 3UTR-3UTR GCA 90 bp | CAGAAAAGCAACATATTTATTTGTCAAGTTCCAGAAACAGGGTCTCTACTGAGTACATCCAGTCTGCAGTaGTGCTGTGACAACAAAAAT | + |
|
Preference number: 2 (lower is better) Translates to: QKSNIFICQVPETGSLLSTSSLQ*CCDNKN Trigger: ATTTTTGTTGTCACAGCAGCACTGCAGACTGGATGT...ACTCAGTAGAGACCCTGTTTCTGGAACTTGACAAATAAATATGTTGCTTTTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| 3UTR GCA 72 bp | ACCAGGAAGGGGATTCTGGGAGTCCAACATCCAGTCTaGAGTGCTGCTGTGACAACAAAAATGAACTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: TRKGILGVQHPV*SAAVTTKMNLC Trigger: ACACAAGTTCATTTTTGTTGTCACAGCAGCACTGCAGACTGGATGTTGGACTCCCAGAATCCCCTTCCTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| CDS-3UTR GCA 90 bp | GATTTGAGACTGGCATTTCTCTGCAGAGCTGGGCTTAAGCTAAGATGCCTCGGTATTCCTCTGCAGCTCTaGAGGCCTGGTCCACATAGG | + |
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Preference number: 4 (lower is better) Translates to: DLRLAFLCRAGLKLRCLGIPLQL*RPGPHR Trigger: CCTATGTGGACCAGGCCTGCAGAGCTGCAGAGGAAT...ACCGAGGCATCTTAGCTTAAGCCCAGCTCTGCAGAGAAATGCCAGTCTCAAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| CDS-3UTR TCA 90 bp | GATTTGAGACTGGCATTTCTCTGCAGAGCTGGGCTTAAGCTAAGATGCCTCGGTTCGTGTAATAGACATTaGCAAATTCCTCTGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: DLRLAFLCRAGLKLRCLGSCNRH*QIPLQL Trigger: GAGCTGCAGAGGAATTTGTCAATGTCTATTACACGA...ACCGAGGCATCTTAGCTTAAGCCCAGCTCTGCAGAGAAATGCCAGTCTCAAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| CDS-3UTR GCA 90 bp | CAGAAAAGCAACATATTTATTTGTCAAGTTCCAGAAACAGGGTCTCTACTGAGTATTCCTCTGCAGCTCTaGAGGCCTGGTCCACATAGG | + |
|
Preference number: 4 (lower is better) Translates to: QKSNIFICQVPETGSLLSIPLQL*RPGPHR Trigger: CCTATGTGGACCAGGCCTGCAGAGCTGCAGAGGAAT...ACTCAGTAGAGACCCTGTTTCTGGAACTTGACAAATAAATATGTTGCTTTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| CDS-3UTR CCA 90 bp | CAGAAAAGCAACATATTTATTTGTCAAGTTCCAGAAACAGGGTCTCTACTGAGTGGTGTAGCGTCATCATaGACAGGCTGGCAGTCTACC | + |
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Preference number: 4 (lower is better) Translates to: QKSNIFICQVPETGSLLSGVASS*TGWQST Trigger: GGTAGACTGCCAGCCTGTCCATGATGACGCTACACC...ACTCAGTAGAGACCCTGTTTCTGGAACTTGACAAATAAATATGTTGCTTTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| CDS-3UTR TCA 90 bp | CAGAAAAGCAACATATTTATTTGTCAAGTTCCAGAAACAGGGTCTCTACTGAGTTCACTGTTCCACAGATaGCCACAAGCACGGTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: QKSNIFICQVPETGSLLSSLFHR*PQARWS Trigger: AGACCACCGTGCTTGTGGTCATCTGTGGAACAGTGA...ACTCAGTAGAGACCCTGTTTCTGGAACTTGACAAATAAATATGTTGCTTTTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| CDS CCA 72 bp | TTCACTGTTCCACAGATGACCACAAGCACGGTGGTCTaGCTTGGTGTAGCGTCATCATGGACAGGCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: FTVPQMTTSTVV*LGVASSWTGWQ Trigger: CTGCCAGCCTGTCCATGATGACGCTACACCAAGCCAGACCACCGTGCTTGTGGTCATCTGTGGAACAGTGAA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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| CDS GCA 72 bp | ATCCATAGTCGTGTAATAGACATTGACAAATTCCTCTaGAGCTCTGCAGGCCTGGTCCACATAGGTCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: IHSRVIDIDKFL*SSAGLVHIGLE Trigger: TTCAAGACCTATGTGGACCAGGCCTGCAGAGCTGCAGAGGAATTTGTCAATGTCTATTACACGACTATGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047177.4 ENSMUST00000109961.8 |
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