Pregenerated sensors for NXPH4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040258Ensembl transcript IDs: ENSMUST00000095266.3
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCTGCAATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCGAGACTGCGATCTGGTaGGAAGCTCGGGGCCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: PAIYRLKKTTPASGTLGTETAIW*EARGPG Trigger: TCCTGGGCCCCGAGCTTCCCACCAGATCGCAGTCTC...GGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAATTGCAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCCAGGCCAGGAGCCATTAATACTGCGGCGTGGGCAATACGCATTCGTAGGGCTGCAATTTACCGTTTaGAAAAGACCACCCCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: VPGQEPLILRRGQYAFVGLQFTV*KRPPQP Trigger: AGGCTGGGGTGGTCTTTTTCAAACGGTAAATTGCAG...CCCTACGAATGCGTATTGCCCACGCCGCAGTATTAATGGCTCCTGGCCTGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| 3UTR-3UTR GCA 90 bp | GAAAGAGTGCCAGGCCAGGAGCCATTAATACTGCGGCGTGGGCAATACGCATTCGTGGGGCTATGCTCTTaGCCCTGCAATTTACCGTTT | + |
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Preference number: 2 (lower is better) Translates to: ERVPGQEPLILRRGQYAFVGLCS*PCNLPF Trigger: AAACGGTAAATTGCAGGGGCAAGAGCATAGCCCCAC...GAATGCGTATTGCCCACGCCGCAGTATTAATGGCTCCTGGCCTGGCACTCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| 3UTR CCA 72 bp | TGCTTTAGCAAGGTTAGGAAGAAGGCAGGACTGACATaGGGCACGCAGAACGGGAGAGGATTGGATGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: CFSKVRKKAGLT*GTQNGRGLDGL Trigger: CAGCCCATCCAATCCTCTCCCGTTCTGCGTGCCCCATGTCAGTCCTGCCTTCTTCCTAACCTTGCTAAAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| 3UTR GCA 72 bp | CACAAGGGCCAGGCAGAGCCCCCTGATCAGGACTTTTaGTTTAGCAAGGTTAGGAAGAAGGCAGGACTGACA | + |
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Preference number: 3 (lower is better) Translates to: HKGQAEPPDQDF*FSKVRKKAGLT Trigger: TGTCAGTCCTGCCTTCTTCCTAACCTTGCTAAAGCAAAAGTCCTGATCAGGGGGCTCTGCCTGGCCCTTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| 3UTR TCA 72 bp | ACTTTTGCTTTAGCAAGGTTAGGAAGAAGGCAGGACTaGCATGGGGCACGCAGAACGGGAGAGGATTGGATG | + |
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Preference number: 3 (lower is better) Translates to: TFALARLGRRQD*HGARRTGEDWM Trigger: CATCCAATCCTCTCCCGTTCTGCGTGCCCCATGTCAGTCCTGCCTTCTTCCTAACCTTGCTAAAGCAAAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CCA 90 bp | GAAGCAGCCAGAGAGGGCAGGTGTAGCCGGACTGAGGGCGGGGGAGGGAAGGGGTGGATGGCTTCCTCTTaGTGCGCGGCACGGACGGGC | + |
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Preference number: 4 (lower is better) Translates to: EAAREGRCSRTEGGGGKGWMASS*CAARTG Trigger: GCCCGTCCGTGCCGCGCACCAAGAGGAAGCCATCCA...CCCCTTCCCTCCCCCGCCCTCAGTCCGGCTACACCTGCCCTCTCTGGCTGCTTC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CCA 90 bp | AGGCTGTTTTTCTCCACCATAGTGGAAGAAGTGGGGGCAGTCACAGGAGCACGGGGAAGATGCGGGCGCTaGGAGCTGCTGGCCGCGGGC | + |
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Preference number: 4 (lower is better) Translates to: RLFFSTIVEEVGAVTGARGRCGR*ELLAAG Trigger: GCCCGCGGCCAGCAGCTCCCAGCGCCCGCATCTTCC...CCGTGCTCCTGTGACTGCCCCCACTTCTTCCACTATGGTGGAGAAAAACAGCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | CACAAGGGCCAGGCAGAGCCCCCTGATCAGGACTTTTGCTTTAGCAAGGTTAGGCAGGCCCTCGGAAGATaGGGGCGCTGGGAGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: HKGQAEPPDQDFCFSKVRQALGR*GRWELL Trigger: CAGCAGCTCCCAGCGCCCGCATCTTCCGAGGGCCTG...CCTAACCTTGCTAAAGCAAAAGTCCTGATCAGGGGGCTCTGCCTGGCCCTTGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR TCA 90 bp | GTGCCAGGCCAGGAGCCATTAATACTGCGGCGTGGGCAATACGCATTCGTAGGGAGGGCGGCACGATACTaGCGCTTAGGTTACCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: VPGQEPLILRRGQYAFVGRAARY*RLGYPG Trigger: GCCTGGGTAACCTAAGCGTCAGTATCGTGCCGCCCT...CCCTACGAATGCGTATTGCCCACGCCGCAGTATTAATGGCTCCTGGCCTGGCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | GAAAGAGTGCCAGGCCAGGAGCCATTAATACTGCGGCGTGGGCAATACGCATTCTCCAGGAGCGCGCCATaGCCAGGCCCTCGGAAGATG | + |
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Preference number: 4 (lower is better) Translates to: ERVPGQEPLILRRGQYAFSRSAP*PGPRKM Trigger: CATCTTCCGAGGGCCTGGGCATGGCGCGCTCCTGGA...GAATGCGTATTGCCCACGCCGCAGTATTAATGGCTCCTGGCCTGGCACTCTTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CCA 90 bp | ATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACAAGGCGGCTGTCCCTGGCTTaGCCAGCGCCCCGGTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: IYRLKKTTPASGTLGTTRRLSLA*PAPRCG Trigger: ACCACACCGGGGCGCTGGCCAAGCCAGGGACAGCCG...CCTTGTGGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR TCA 90 bp | GAAAGAGTGCCAGGCCAGGAGCCATTAATACTGCGGCGTGGGCAATACGCATTCTCTGCGTGTGCTCGGTaGAGCACACCTGCGACGGGT | + |
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Preference number: 4 (lower is better) Translates to: ERVPGQEPLILRRGQYAFSACAR*STPATG Trigger: ACCCGTCGCAGGTGTGCTTCACCGAGCACACGCAGA...GAATGCGTATTGCCCACGCCGCAGTATTAATGGCTCCTGGCCTGGCACTCTTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | GAAAGAGTGCCAGGCCAGGAGCCATTAATACTGCGGCGTGGGCAATACGCATTCTACAGGCACGGGCGGTaGTTGCGAGCGCGGTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ERVPGQEPLILRRGQYAFYRHGR*LRARFV Trigger: GACAAACCGCGCTCGCAAGCACCGCCCGTGCCTGTA...GAATGCGTATTGCCCACGCCGCAGTATTAATGGCTCCTGGCCTGGCACTCTTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | CACAAGGGCCAGGCAGAGCCCCCTGATCAGGACTTTTGCTTTAGCAAGGTTAGGGCCTGGCTCTGCGTGTaGTCGGTGAAGCACACCTGC | + |
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Preference number: 4 (lower is better) Translates to: HKGQAEPPDQDFCFSKVRAWLCV*SVKHTC Trigger: GCAGGTGTGCTTCACCGAGCACACGCAGAGCCAGGC...CCTAACCTTGCTAAAGCAAAAGTCCTGATCAGGGGGCTCTGCCTGGCCCTTGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CCA 90 bp | ATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACAAGGCAGAGCCAGGCGGCCTaGCTCTGCGTGTGCTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: IYRLKKTTPASGTLGTTRQSQAA*LCVCSV Trigger: CACCGAGCACACGCAGAGCCAGGCCGCCTGGCTCTG...CCTTGTGGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | AATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACAAGGAGTGGGCCGGCAAGTaGGCCCCCAAGGTTGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: NLPFEKDHPSLRDTRYHKEWAGK*APKVAP Trigger: GGGAGCAACCTTGGGGGCGCACTTGCCGGCCCACTC...CTTGTGGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | CACAAGGGCCAGGCAGAGCCCCCTGATCAGGACTTTTGCTTTAGCAAGGTTAGGTCGGTGAAGCACACCTaGGACGGGTCGTACAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: HKGQAEPPDQDFCFSKVRSVKHT*DGSYRH Trigger: GTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCGA...CCTAACCTTGCTAAAGCAAAAGTCCTGATCAGGGGGCTCTGCCTGGCCCTTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | ATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACAAGGCAGGCGGCCTGGCTCTaGGTGTGCTCGGTGAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: IYRLKKTTPASGTLGTTRQAAWL*VCSVKH Trigger: GTGCTTCACCGAGCACACGCAGAGCCAGGCCGCCTG...CCTTGTGGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | AGAGTGCCAGGCCAGGAGCCATTAATACTGCGGCGTGGGCAATACGCATTCGTACATGGTCCACGATCTTaGCGGTCACCAACAGCGAGA | + |
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Preference number: 4 (lower is better) Translates to: RVPGQEPLILRRGQYAFVHGPRS*RSPTAR Trigger: TCTCGCTGTTGGTGACCGGCAAGATCGTGGACCATG...TACGAATGCGTATTGCCCACGCCGCAGTATTAATGGCTCCTGGCCTGGCACTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR GCA 90 bp | AATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACAAGGGCACGGGCGGTGCTTaGGAGCGCGGTTTGTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: NLPFEKDHPSLRDTRYHKGTGGA*ERGLSS Trigger: AGAAGACAAACCGCGCTCGCAAGCACCGCCCGTGCC...CTTGTGGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CCA 90 bp | CACAAGGGCCAGGCAGAGCCCCCTGATCAGGACTTTTGCTTTAGCAAGGTTAGGAAGGTACCGTTCACATaGTCCACGATCTTGCCGGTC | + |
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Preference number: 4 (lower is better) Translates to: HKGQAEPPDQDFCFSKVRKVPFT*STILPV Trigger: GACCGGCAAGATCGTGGACCATGTGAACGGTACCTT...CCTAACCTTGCTAAAGCAAAAGTCCTGATCAGGGGGCTCTGCCTGGCCCTTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR TCA 90 bp | GAAAGAGTGCCAGGCCAGGAGCCATTAATACTGCGGCGTGGGCAATACGCATTCAGGCTGGACGAATTGTaGCGGAAGTACACACTGAAG | + |
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Preference number: 4 (lower is better) Translates to: ERVPGQEPLILRRGQYAFRLDEL*RKYTLK Trigger: CTTCAGTGTGTACTTCCGTCACAATTCGTCCAGCCT...GAATGCGTATTGCCCACGCCGCAGTATTAATGGCTCCTGGCCTGGCACTCTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CCA 90 bp | AATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACAAGGGCCGCTTTAATGGATaGCTTCCTCTTGGTGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: NLPFEKDHPSLRDTRYHKGRFNG*LPLGAR Trigger: CCGCGCACCAAGAGGAAGCCATCCATTAAAGCGGCC...CTTGTGGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CCA 90 bp | AATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACAAGCTTCAAGTGCCAGCGTaGACTGTAGAGGGTGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: NLPFEKDHPSLRDTRYHKLQVPA*TVEGGR Trigger: CCTCCCACCCTCTACAGTCCACGCTGGCACTTGAAG...CTTGTGGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR TCA 90 bp | CCTGCAATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCGACGGAAGTACACACTaGAGGTACCGTTCACATGGT | + |
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Preference number: 4 (lower is better) Translates to: PAIYRLKKTTPASGTLGTDGSTH*RYRSHG Trigger: ACCATGTGAACGGTACCTTCAGTGTGTACTTCCGTC...GGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAATTGCAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 90 bp | GCTCCAGGAGCGCGCCATGCCCAGGCCCTCGGAAGATGCGGGCGCTaGGAGCTGCTGGCCGCGGGCGCCCCCTCCGGCCATGGCGGGACG | + |
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Preference number: 5 (lower is better) Translates to: APGARHAQALGRCGR*ELLAAGAPSGHGGT Trigger: CGTCCCGCCATGGCCGGAGGGGGCGCCCGCGGCCAGCAGCTCCCAGCGCCCGCATCTTCCGAGGGCCTGGGCATGGCGCGCTCCTGGAGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 90 bp | ACGGACGGGCCACCGGCTGTCCCTGGCTTGGCCAGCGCCCCGGTGTaGTTAGCCGGCCAAGCCCAGCTCCAGGAGCGCGCCATGCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TDGPPAVPGLASAPV*LAGQAQLQERAMPR Trigger: CCTGGGCATGGCGCGCTCCTGGAGCTGGGCTTGGCCGGCTAACCACACCGGGGCGCTGGCCAAGCCAGGGACAGCCGGTGGCCCGTCCGT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 90 bp | TGGCTTCCTCTTGGTGCGCGGCACGGACGGGCCACCGGCTGTCCCTaGCTTGGCCAGCGCCCCGGTGTGGTTAGCCGGCCAAGCCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: WLPLGARHGRATGCP*LGQRPGVVSRPSPA Trigger: AGCTGGGCTTGGCCGGCTAACCACACCGGGGCGCTGGCCAAGCCAGGGACAGCCGGTGGCCCGTCCGTGCCGCGCACCAAGAGGAAGCCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS TCA 90 bp | AGGGCTTGGCGCAGAGCCAGGCGGCCTGGCTCTGCGTGTGCTCGGTaGAGCACACCTGCGACGGGTCGTACAGGCACGGGCGGTGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: RAWRRARRPGSACAR*STPATGRTGTGGAC Trigger: GCAAGCACCGCCCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCGAGCACACGCAGAGCCAGGCCGCCTGGCTCTGCGCCAAGCCCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS GCA 90 bp | CAGAGCCAGGCGGCCTGGCTCTGCGTGTGCTCGGTGAAGCACACCTaGGACGGGTCGTACAGGCACGGGCGGTGCTTGCGAGCGCGGTTT | + |
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Preference number: 5 (lower is better) Translates to: QSQAAWLCVCSVKHT*DGSYRHGRCLRARF Trigger: AAACCGCGCTCGCAAGCACCGCCCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCGAGCACACGCAGAGCCAGGCCGCCTGGCTCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CAA 90 bp | TCCCACCTAGTGAGACTGCGATCTGGTGGGAAGCTCGGGGCCCAGGACAGGGGCAGGCACGGGCGGTGCTaGCGAGCGCGGTTTGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SHLVRLRSGGKLGAQDRGRHGRC*RARFVF Trigger: GAAGACAAACCGCGCTCGCAAGCACCGCCCGTGCCT...GCCCCTGTCCTGGGCCCCGAGCTTCCCACCAGATCGCAGTCTCACTAGGTGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 90 bp | GCGGGACGCAAGTCTAGGTACTGGGGCCTCCCGGACTCCACGATCTaGCCACAGACAGCCTTCCTAAGGAGCCAAGGACCAAAGAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: AGRKSRYWGLPDSTI*PQTAFLRSQGPKSK Trigger: CTTGCTCTTTGGTCCTTGGCTCCTTAGGAAGGCTGTCTGTGGCCAGATCGTGGAGTCCGGGAGGCCCCAGTACCTAGACTTGCGTCCCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS TCA 90 bp | ACCAGACGCCCCCGAACTCCACACGCTTGGAGGGCGGCACGATACTaGCGCTTAGGTTACCCAGGCTGGACGAATTGTGACGGAAGTACA | + |
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Preference number: 5 (lower is better) Translates to: TRRPRTPHAWRAARY*RLGYPGWTNCDGST Trigger: TGTACTTCCGTCACAATTCGTCCAGCCTGGGTAACCTAAGCGTCAGTATCGTGCCGCCCTCCAAGCGTGTGGAGTTCGGGGGCGTCTGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS GCA 90 bp | TGCTCGGTGAAGCACACCTGCGACGGGTCGTACAGGCACGGGCGGTaGTTGCGAGCGCGGTTTGTCTTCTCATATTCCACGTGGCAATTA | + |
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Preference number: 5 (lower is better) Translates to: CSVKHTCDGSYRHGR*LRARFVFSYSTWQL Trigger: TAATTGCCACGTGGAATATGAGAAGACAAACCGCGCTCGCAAGCACCGCCCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCGAGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 90 bp | CACGGGCGGTGCTTGCGAGCGCGGTTTGTCTTCTCATATTCCACGTaGCAATTAAAAGCGCGCGACTCTTTGGCCCCAGGAACTCCTAGC | + |
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Preference number: 5 (lower is better) Translates to: HGRCLRARFVFSYST*QLKARDSLAPGTPS Trigger: GCTAGGAGTTCCTGGGGCCAAAGAGTCGCGCGCTTTTAATTGCCACGTGGAATATGAGAAGACAAACCGCGCTCGCAAGCACCGCCCGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CAA 90 bp | ATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACAAGGCCGAACTCCACACGCTaGGAGGGCGGCACGATACTG | + |
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Preference number: 5 (lower is better) Translates to: IYRLKKTTPASGTLGTTRPNSTR*EGGTIL Trigger: CAGTATCGTGCCGCCCTCCAAGCGTGTGGAGTTCGG...CCTTGTGGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CAA 90 bp | CCTGCAATTTACCGTTTGAAAAAGACCACCCCAGCCTCAGGGACACTCGGTACCACATGGTCCACGATCTaGCCGGTCACCAACAGCGAG | + |
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Preference number: 5 (lower is better) Translates to: PAIYRLKKTTPASGTLGTTWSTI*PVTNSE Trigger: CTCGCTGTTGGTGACCGGCAAGATCGTGGACCATGT...GGTACCGAGTGTCCCTGAGGCTGGGGTGGTCTTTTTCAAACGGTAAATTGCAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CAA 90 bp | AGGCTGTTTTTCTCCACCATAGTGGAAGAAGTGGGGGCAGTCACAGGAGCACGGGCTTGCGAGCGCGGTTaGTCTTCTCATATTCCACGT | + |
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Preference number: 5 (lower is better) Translates to: RLFFSTIVEEVGAVTGARACERG*SSHIPR Trigger: ACGTGGAATATGAGAAGACAAACCGCGCTCGCAAGC...CCGTGCTCCTGTGACTGCCCCCACTTCTTCCACTATGGTGGAGAAAAACAGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS TCA 90 bp | CGCTTAGGTTACCCAGGCTGGACGAATTGTGACGGAAGTACACACTaGAGGTACCGTTCACATGGTCCACGATCTTGCCGGTCACCAACA | + |
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Preference number: 5 (lower is better) Translates to: RLGYPGWTNCDGSTH*RYRSHGPRSCRSPT Trigger: TGTTGGTGACCGGCAAGATCGTGGACCATGTGAACGGTACCTTCAGTGTGTACTTCCGTCACAATTCGTCCAGCCTGGGTAACCTAAGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CAA 90 bp | CACAAGGGCCAGGCAGAGCCCCCTGATCAGGACTTTTGCTTTAGCAAGGTTAGGACCAACAGCGAGAACTaGAGGGTATGCACACGAAAG | + |
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Preference number: 5 (lower is better) Translates to: HKGQAEPPDQDFCFSKVRTNSEN*RVCTRK Trigger: CTTTCGTGTGCATACCCTCAAGTTCTCGCTGTTGGT...CCTAACCTTGCTAAAGCAAAAGTCCTGATCAGGGGGCTCTGCCTGGCCCTTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS-3UTR CAA 90 bp | CACAAGGGCCAGGCAGAGCCCCCTGATCAGGACTTTTGCTTTAGCAAGGTTAGGAAGATACAGATGACTTaGAAGGGCTTGGCGCAGAGC | + |
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Preference number: 5 (lower is better) Translates to: HKGQAEPPDQDFCFSKVRKIQMT*KGLAQS Trigger: GCTCTGCGCCAAGCCCTTCAAAGTCATCTGTATCTT...CCTAACCTTGCTAAAGCAAAAGTCCTGATCAGGGGGCTCTGCCTGGCCCTTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 72 bp | GCGCGCCATGCCCAGGCCCTCGGAAGATGCGGGCGCTaGGAGCTGCTGGCCGCGGGCGCCCCCTCCGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: ARHAQALGRCGR*ELLAAGAPSGH Trigger: ATGGCCGGAGGGGGCGCCCGCGGCCAGCAGCTCCCAGCGCCCGCATCTTCCGAGGGCCTGGGCATGGCGCGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CAA 72 bp | GTGCGCGGCACGGACGGGCCACCGGCTGTCCCTGGCTaGGCCAGCGCCCCGGTGTGGTTAGCCGGCCAAGCC | + |
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Preference number: 6 (lower is better) Translates to: VRGTDGPPAVPG*ASAPVWLAGQA Trigger: GGCTTGGCCGGCTAACCACACCGGGGCGCTGGCCAAGCCAGGGACAGCCGGTGGCCCGTCCGTGCCGCGCAC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 72 bp | CCACCGGCTGTCCCTGGCTTGGCCAGCGCCCCGGTGTaGTTAGCCGGCCAAGCCCAGCTCCAGGAGCGCGCC | + |
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Preference number: 6 (lower is better) Translates to: PPAVPGLASAPV*LAGQAQLQERA Trigger: GGCGCGCTCCTGGAGCTGGGCTTGGCCGGCTAACCACACCGGGGCGCTGGCCAAGCCAGGGACAGCCGGTGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 72 bp | CTTGGTGCGCGGCACGGACGGGCCACCGGCTGTCCCTaGCTTGGCCAGCGCCCCGGTGTGGTTAGCCGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LGARHGRATGCP*LGQRPGVVSRP Trigger: TGGCCGGCTAACCACACCGGGGCGCTGGCCAAGCCAGGGACAGCCGGTGGCCCGTCCGTGCCGCGCACCAAG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CAA 90 bp | TTCCTCTTGGTGCGCGGCACGGACGGGCCACCGGCTGTCCCTGGCTaGGCCAGCGCCCCGGTGTGGTTAGCCGGCCAAGCCCAGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: FLLVRGTDGPPAVPG*ASAPVWLAGQAQLQ Trigger: CTGGAGCTGGGCTTGGCCGGCTAACCACACCGGGGCGCTGGCCAAGCCAGGGACAGCCGGTGGCCCGTCCGTGCCGCGCACCAAGAGGAA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS TCA 72 bp | CGCAGAGCCAGGCGGCCTGGCTCTGCGTGTGCTCGGTaGAGCACACCTGCGACGGGTCGTACAGGCACGGGC | + |
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Preference number: 6 (lower is better) Translates to: RRARRPGSACAR*STPATGRTGTG Trigger: GCCCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCGAGCACACGCAGAGCCAGGCCGCCTGGCTCTGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS GCA 72 bp | GCGGCCTGGCTCTGCGTGTGCTCGGTGAAGCACACCTaGGACGGGTCGTACAGGCACGGGCGGTGCTTGCGA | + |
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Preference number: 6 (lower is better) Translates to: AAWLCVCSVKHT*DGSYRHGRCLR Trigger: TCGCAAGCACCGCCCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCGAGCACACGCAGAGCCAGGCCGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS GCA 72 bp | GGCTTGGCGCAGAGCCAGGCGGCCTGGCTCTGCGTGTaGTCGGTGAAGCACACCTGCGACGGGTCGTACAGG | + |
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Preference number: 6 (lower is better) Translates to: GLAQSQAAWLCV*SVKHTCDGSYR Trigger: CCTGTACGACCCGTCGCAGGTGTGCTTCACCGAGCACACGCAGAGCCAGGCCGCCTGGCTCTGCGCCAAGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CAA 90 bp | TGGGAGGCAGGCCCAGGCAACCAGACGCCCCCGAACTCCACACGCTaGGAGGGCGGCACGATACTGACGCTTAGGTTACCCAGGCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: WEAGPGNQTPPNSTR*EGGTILTLRLPRLD Trigger: GTCCAGCCTGGGTAACCTAAGCGTCAGTATCGTGCCGCCCTCCAAGCGTGTGGAGTTCGGGGGCGTCTGGTTGCCTGGGCCTGCCTCCCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CAA 72 bp | GGCCCAGGCAACCAGACGCCCCCGAACTCCACACGCTaGGAGGGCGGCACGATACTGACGCTTAGGTTACCC | + |
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Preference number: 6 (lower is better) Translates to: GPGNQTPPNSTR*EGGTILTLRLP Trigger: GGGTAACCTAAGCGTCAGTATCGTGCCGCCCTCCAAGCGTGTGGAGTTCGGGGGCGTCTGGTTGCCTGGGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS GCA 72 bp | ACACCTGCGACGGGTCGTACAGGCACGGGCGGTGCTTaGGAGCGCGGTTTGTCTTCTCATATTCCACGTGGC | + |
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Preference number: 6 (lower is better) Translates to: TPATGRTGTGGA*ERGLSSHIPRG Trigger: GCCACGTGGAATATGAGAAGACAAACCGCGCTCGCAAGCACCGCCCGTGCCTGTACGACCCGTCGCAGGTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 72 bp | GCCGAAAATCTTCTTGGCTCGGGCCGCTTTAATGGATaGCTTCCTCTTGGTGCGCGGCACGGACGGGCCACC | + |
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Preference number: 6 (lower is better) Translates to: AENLLGSGRFNG*LPLGARHGRAT Trigger: GGTGGCCCGTCCGTGCCGCGCACCAAGAGGAAGCCATCCATTAAAGCGGCCCGAGCCAAGAAGATTTTCGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CAA 72 bp | CACACCTGCGACGGGTCGTACAGGCACGGGCGGTGCTaGCGAGCGCGGTTTGTCTTCTCATATTCCACGTGG | + |
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Preference number: 6 (lower is better) Translates to: HTCDGSYRHGRC*RARFVFSYSTW Trigger: CCACGTGGAATATGAGAAGACAAACCGCGCTCGCAAGCACCGCCCGTGCCTGTACGACCCGTCGCAGGTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS GCA 72 bp | AAGCACACCTGCGACGGGTCGTACAGGCACGGGCGGTaGTTGCGAGCGCGGTTTGTCTTCTCATATTCCACG | + |
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Preference number: 6 (lower is better) Translates to: KHTCDGSYRHGR*LRARFVFSYST Trigger: CGTGGAATATGAGAAGACAAACCGCGCTCGCAAGCACCGCCCGTGCCTGTACGACCCGTCGCAGGTGTGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS TCA 72 bp | CCCCGAACTCCACACGCTTGGAGGGCGGCACGATACTaGCGCTTAGGTTACCCAGGCTGGACGAATTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: PRTPHAWRAARY*RLGYPGWTNCD Trigger: GTCACAATTCGTCCAGCCTGGGTAACCTAAGCGTCAGTATCGTGCCGCCCTCCAAGCGTGTGGAGTTCGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CAA 90 bp | TCGGTGAAGCACACCTGCGACGGGTCGTACAGGCACGGGCGGTGCTaGCGAGCGCGGTTTGTCTTCTCATATTCCACGTGGCAATTAAAA | + |
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Preference number: 6 (lower is better) Translates to: SVKHTCDGSYRHGRC*RARFVFSYSTWQLK Trigger: TTTTAATTGCCACGTGGAATATGAGAAGACAAACCGCGCTCGCAAGCACCGCCCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CAA 72 bp | TCATATTCCACGTGGCAATTAAAAGCGCGCGACTCTTaGGCCCCAGGAACTCCTAGCGCGCTTCCGAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: SYSTWQLKARDS*APGTPSALPSG Trigger: CCCACTCGGAAGCGCGCTAGGAGTTCCTGGGGCCAAAGAGTCGCGCGCTTTTAATTGCCACGTGGAATATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CAA 90 bp | TTTGTCTTCTCATATTCCACGTGGCAATTAAAAGCGCGCGACTCTTaGGCCCCAGGAACTCCTAGCGCGCTTCCGAGTGGGCCGGCAAGT | + |
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Preference number: 6 (lower is better) Translates to: FVFSYSTWQLKARDS*APGTPSALPSGPAS Trigger: ACTTGCCGGCCCACTCGGAAGCGCGCTAGGAGTTCCTGGGGCCAAAGAGTCGCGCGCTTTTAATTGCCACGTGGAATATGAGAAGACAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS TCA 72 bp | TACCCAGGCTGGACGAATTGTGACGGAAGTACACACTaGAGGTACCGTTCACATGGTCCACGATCTTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: YPGWTNCDGSTH*RYRSHGPRSCR Trigger: CCGGCAAGATCGTGGACCATGTGAACGGTACCTTCAGTGTGTACTTCCGTCACAATTCGTCCAGCCTGGGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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| CDS CCA 72 bp | TGCTTGCGAGCGCGGTTTGTCTTCTCATATTCCACGTaGCAATTAAAAGCGCGCGACTCTTTGGCCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: CLRARFVFSYST*QLKARDSLAPG Trigger: TCCTGGGGCCAAAGAGTCGCGCGCTTTTAATTGCCACGTGGAATATGAGAAGACAAACCGCGCTCGCAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095266.3 |
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