RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NXPH2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069132

Ensembl transcript IDs: ENSMUST00000102945.2

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAAACCTTACAAAGCATTTCAAAGGCAGGCTCATTTGAAGAGCAGTaGTTATTGCATACACAATTTGGTTTCTCCCTTTACACATGGTCA +
Preference number: 1 (lower is better)
Translates to: ETLQSISKAGSFEEQ*LLHTQFGFSLYTWS
Trigger: TGACCATGTGTAAAGGGAGAAACCAAATTGTGTATGCAATAAGCACTGCTCTTCAAATGAGCCTGCCTTTGAAATGCTTTGTAAGGTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR CCA 90 bp GAGCAGTGCTTATTGCATACACAATTTGGTTTCTCCCTTTACACATaGTCACTGCTCATGATTCTTACAGAGAAGCAATATTTCCAGAAT +
Preference number: 1 (lower is better)
Translates to: EQCLLHTQFGFSLYT*SLLMILTEKQYFQN
Trigger: ATTCTGGAAATATTGCTTCTCTGTAAGAATCATGAGCAGTGACCATGTGTAAAGGGAGAAACCAAATTGTGTATGCAATAAGCACTGCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR TCA 90 bp TGCATACACAATTTGGTTTCTCCCTTTACACATGGTCACTGCTCATaGTTCTTACAGAGAAGCAATATTTCCAGAATGTTACCATCTTAC +
Preference number: 1 (lower is better)
Translates to: CIHNLVSPFTHGHCS*FLQRSNISRMLPSY
Trigger: GTAAGATGGTAACATTCTGGAAATATTGCTTCTCTGTAAGAATCATGAGCAGTGACCATGTGTAAAGGGAGAAACCAAATTGTGTATGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR CAA 90 bp TTACAAAGCATTTCAAAGGCAGGCTCATTTGAAGAGCAGTGCTTATaGCATACACAATTTGGTTTCTCCCTTTACACATGGTCACTGCTC +
Preference number: 2 (lower is better)
Translates to: LQSISKAGSFEEQCL*HTQFGFSLYTWSLL
Trigger: GAGCAGTGACCATGTGTAAAGGGAGAAACCAAATTGTGTATGCAATAAGCACTGCTCTTCAAATGAGCCTGCCTTTGAAATGCTTTGTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR CAA 90 bp CTCTTTCTAAGGAAACCTTACAAAGCATTTCAAAGGCAGGCTCATTaGAAGAGCAGTGCTTATTGCATACACAATTTGGTTTCTCCCTTT +
Preference number: 2 (lower is better)
Translates to: LFLRKPYKAFQRQAH*KSSAYCIHNLVSPF
Trigger: AAAGGGAGAAACCAAATTGTGTATGCAATAAGCACTGCTCTTCAAATGAGCCTGCCTTTGAAATGCTTTGTAAGGTTTCCTTAGAAAGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR-3UTR TCA 90 bp GCTGTAGACTTTCTGAACAATGTGACAAGAGCGCATTTGTTTGTTAGGACTTACCATCTTCGTGATTGTTaGGTTGACTTAAATCCACAT +
Preference number: 2 (lower is better)
Translates to: AVDFLNNVTRAHLFVRTYHLRDC*VDLNPH
Trigger: ATGTGGATTTAAGTCAACTCAACAATCACGAAGATG...GTAAGTCCTAACAAACAAATGCGCTCTTGTCACATTGTTCAGAAAGTCTACAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR-3UTR GCA 90 bp GCTGTAGACTTTCTGAACAATGTGACAAGAGCGCATTTGTTTGTTAGGACTTACGTCATAATAGTAAAGTaGTTCAAGCACTTTCTACTC +
Preference number: 2 (lower is better)
Translates to: AVDFLNNVTRAHLFVRTYVIIVK*FKHFLL
Trigger: GAGTAGAAAGTGCTTGAAGCACTTTACTATTATGAC...GTAAGTCCTAACAAACAAATGCGCTCTTGTCACATTGTTCAGAAAGTCTACAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR-3UTR CCA 90 bp GCTGTAGACTTTCTGAACAATGTGACAAGAGCGCATTTGTTTGTTAGGACTTACATTGCATACACAATTTaGTTTCTCCCTTTACACATG +
Preference number: 2 (lower is better)
Translates to: AVDFLNNVTRAHLFVRTYIAYTI*FLPLHM
Trigger: CATGTGTAAAGGGAGAAACCAAATTGTGTATGCAAT...GTAAGTCCTAACAAACAAATGCGCTCTTGTCACATTGTTCAGAAAGTCTACAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR GCA 72 bp CAAAGCATTTCAAAGGCAGGCTCATTTGAAGAGCAGTaGTTATTGCATACACAATTTGGTTTCTCCCTTTAC +
Preference number: 3 (lower is better)
Translates to: QSISKAGSFEEQ*LLHTQFGFSLY
Trigger: GTAAAGGGAGAAACCAAATTGTGTATGCAATAAGCACTGCTCTTCAAATGAGCCTGCCTTTGAAATGCTTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR GCA 72 bp TCCAATACCACTCAAATGAGAGTCATAATAGTAAAGTaGTTCAAGCACTTTCTACTCAGACTGCTCAGATGG +
Preference number: 3 (lower is better)
Translates to: SNTTQMRVIIVK*FKHFLLRLLRW
Trigger: CCATCTGAGCAGTCTGAGTAGAAAGTGCTTGAAGCACTTTACTATTATGACTCTCATTTGAGTGGTATTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR-3UTR CAA 90 bp GTTACCATCTTACATGAAAATGCTGGTTTCAGTCAGTTTAACGTTTTAGATCAGAATCTGGACAAGGAATaGCAGTCCACTGCCAGAAAT +
Preference number: 3 (lower is better)
Translates to: VTILHENAGFSQFNVLDQNLDKE*QSTARN
Trigger: ATTTCTGGCAGTGGACTGCAATTCCTTGTCCAGATT...CTGATCTAAAACGTTAAACTGACTGAAACCAGCATTTTCATGTAAGATGGTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR TCA 72 bp GGAAACCTTACAAAGCATTTCAAAGGCAGGCTCATTTaGAGAGCAGTGCTTATTGCATACACAATTTGGTTT +
Preference number: 3 (lower is better)
Translates to: GNLTKHFKGRLI*RAVLIAYTIWF
Trigger: AAACCAAATTGTGTATGCAATAAGCACTGCTCTTCAAATGAGCCTGCCTTTGAAATGCTTTGTAAGGTTTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
3UTR CCA 72 bp TTATTGCATACACAATTTGGTTTCTCCCTTTACACATaGTCACTGCTCATGATTCTTACAGAGAAGCAATAT +
Preference number: 3 (lower is better)
Translates to: LLHTQFGFSLYT*SLLMILTEKQY
Trigger: ATATTGCTTCTCTGTAAGAATCATGAGCAGTGACCATGTGTAAAGGGAGAAACCAAATTGTGTATGCAATAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR TCA 90 bp CTTTTTCCTTTTATCTGTTCTCATACAGTGCCAGGGTACATCATAAAGATGGCCCGTGTTGTCTGCATATaGTGGCTTTGGATCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LFPFICSHTVPGYIIKMARVVCI*WLWIWR
Trigger: CCTCCAGATCCAAAGCCATCATATGCAGACAACACG...GGCCATCTTTATGATGTACCCTGGCACTGTATGAGAACAGATAAAAGGAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR TCA 90 bp GCTGTAGACTTTCTGAACAATGTGACAAGAGCGCATTTGTTTGTTAGGACTTACAGGTACCAAGCTCACTaGAACATTGCCCAGACCTGT +
Preference number: 4 (lower is better)
Translates to: AVDFLNNVTRAHLFVRTYRYQAH*NIAQTC
Trigger: ACAGGTCTGGGCAATGTTTCAGTGAGCTTGGTACCT...GTAAGTCCTAACAAACAAATGCGCTCTTGTCACATTGTTCAGAAAGTCTACAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR GCA 90 bp GCTGTAGACTTTCTGAACAATGTGACAAGAGCGCATTTGTTTGTTAGGACTTACTCACAAAATAGCAGCTaGAGCAAGCCTGGGACTACA +
Preference number: 4 (lower is better)
Translates to: AVDFLNNVTRAHLFVRTYSQNSS*SKPGTT
Trigger: TGTAGTCCCAGGCTTGCTGCAGCTGCTATTTTGTGA...GTAAGTCCTAACAAACAAATGCGCTCTTGTCACATTGTTCAGAAAGTCTACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CCA 90 bp ACCTTACAAAGCATTTCAAAGGCAGGCTCATTTGAAGAGCAGTGCTTATTGCATCCTGGTAGCAGATTTTaGATGGGTCGAAATTGCACA +
Preference number: 4 (lower is better)
Translates to: TLQSISKAGSFEEQCLLHPGSRF*MGRNCT
Trigger: TGTGCAATTTCGACCCATCCAAAATCTGCTACCAGG...ATGCAATAAGCACTGCTCTTCAAATGAGCCTGCCTTTGAAATGCTTTGTAAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR GCA 90 bp ACCTTACAAAGCATTTCAAAGGCAGGCTCATTTGAAGAGCAGTGCTTATTGCATAGCTCACTGAAACATTaGCCAGACCTGTTGAATTGT +
Preference number: 4 (lower is better)
Translates to: TLQSISKAGSFEEQCLLHSSLKH*PDLLNC
Trigger: ACAATTCAACAGGTCTGGGCAATGTTTCAGTGAGCT...ATGCAATAAGCACTGCTCTTCAAATGAGCCTGCCTTTGAAATGCTTTGTAAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CCA 90 bp ACCTTACAAAGCATTTCAAAGGCAGGCTCATTTGAAGAGCAGTGCTTATTGCATGTCTCCAAGGTAGACTaGGGGGATATTTCAAATTCT +
Preference number: 4 (lower is better)
Translates to: TLQSISKAGSFEEQCLLHVSKVD*GDISNS
Trigger: AGAATTTGAAATATCCCCCCAGTCTACCTTGGAGAC...ATGCAATAAGCACTGCTCTTCAAATGAGCCTGCCTTTGAAATGCTTTGTAAGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CCA 90 bp CTTTTTCCTTTTATCTGTTCTCATACAGTGCCAGGGTACATCATAAAGATGGCCGTTTTAATGTTAGAGTaGAAATCACCCCACCCAAAC +
Preference number: 4 (lower is better)
Translates to: LFPFICSHTVPGYIIKMAVLMLE*KSPHPN
Trigger: GTTTGGGTGGGGTGATTTCCACTCTAACATTAAAAC...GGCCATCTTTATGATGTACCCTGGCACTGTATGAGAACAGATAAAAGGAAAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR TCA 90 bp TTACACATGGTCACTGCTCATGATTCTTACAGAGAAGCAATATTTCCAGAATGTGTCGGAAATAAACACTaGATGTTCCGTTTCCATGAT +
Preference number: 4 (lower is better)
Translates to: LHMVTAHDSYREAIFPECVGNKH*MFRFHD
Trigger: ATCATGGAAACGGAACATTCAGTGTTTATTTCCGAC...ACATTCTGGAAATATTGCTTCTCTGTAAGAATCATGAGCAGTGACCATGTGTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR TCA 90 bp ACATATAATGAACCCATGACTGTGGAATTTTCTGCCCAGAAATACTTTCTTTCAATTGCCCAGACCTGTTaGATTGTGTCGGAAATAAAC +
Preference number: 4 (lower is better)
Translates to: TYNEPMTVEFSAQKYFLSIAQTC*IVSEIN
Trigger: GTTTATTTCCGACACAATTCAACAGGTCTGGGCAAT...TGAAAGAAAGTATTTCTGGGCAGAAAATTCCACAGTCATGGGTTCATTATATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CCA 90 bp ACATATAATGAACCCATGACTGTGGAATTTTCTGCCCAGAAATACTTTCTTTCATCCTGTCTTCACTATTaGCCGTCTTTTAGTTCTTGC +
Preference number: 4 (lower is better)
Translates to: TYNEPMTVEFSAQKYFLSSCLHY*PSFSSC
Trigger: GCAAGAACTAAAAGACGGCCAATAGTGAAGACAGGA...TGAAAGAAAGTATTTCTGGGCAGAAAATTCCACAGTCATGGGTTCATTATATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CCA 90 bp TTACACATGGTCACTGCTCATGATTCTTACAGAGAAGCAATATTTCCAGAATGTCTGGTAATCCTTGAATaGAACAGATTTCCAACCAAT +
Preference number: 4 (lower is better)
Translates to: LHMVTAHDSYREAIFPECLVILE*NRFPTN
Trigger: ATTGGTTGGAAATCTGTTCCATTCAAGGATTACCAG...ACATTCTGGAAATATTGCTTCTCTGTAAGAATCATGAGCAGTGACCATGTGTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS TCA 90 bp TATGTTTGCCAGCCAATCCCAAAAGTTTTTCGTGTTGTCTGCATATaGTGGCTTTGGATCTGGAGGCTGTTTAACAAACAGACGCAGAGG +
Preference number: 5 (lower is better)
Translates to: YVCQPIPKVFRVVCI*WLWIWRLFNKQTQR
Trigger: CCTCTGCGTCTGTTTGTTAAACAGCCTCCAGATCCAAAGCCATCATATGCAGACAACACGAAAAACTTTTGGGATTGGCTGGCAAACATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS CCA 90 bp GGAGGCTGTTTAACAAACAGACGCAGAGGACTGGTAATCCTTGAATaGAACAGATTTCCAACCAATGTTTCAGGAACAGTTCTGTCTTCC +
Preference number: 5 (lower is better)
Translates to: GGCLTNRRRGLVILE*NRFPTNVSGTVLSS
Trigger: GGAAGACAGAACTGTTCCTGAAACATTGGTTGGAAATCTGTTCCATTCAAGGATTACCAGTCCTCTGCGTCTGTTTGTTAAACAGCCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS TCA 90 bp ATCTGGAGGCTGTTTAACAAACAGACGCAGAGGACTGGTAATCCTTaGATGGAACAGATTTCCAACCAATGTTTCAGGAACAGTTCTGTC +
Preference number: 5 (lower is better)
Translates to: IWRLFNKQTQRTGNP*MEQISNQCFRNSSV
Trigger: GACAGAACTGTTCCTGAAACATTGGTTGGAAATCTGTTCCATTCAAGGATTACCAGTCCTCTGCGTCTGTTTGTTAAACAGCCTCCAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CAA 90 bp CAGTGCTTATTGCATACACAATTTGGTTTCTCCCTTTACACATGGTCACTGCTCAAGCTCACTGAAACATaGCCCAGACCTGTTGAATTG +
Preference number: 5 (lower is better)
Translates to: QCLLHTQFGFSLYTWSLLKLTET*PRPVEL
Trigger: CAATTCAACAGGTCTGGGCAATGTTTCAGTGAGCTT...GAGCAGTGACCATGTGTAAAGGGAGAAACCAAATTGTGTATGCAATAAGCACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CAA 90 bp GCTGTAGACTTTCTGAACAATGTGACAAGAGCGCATTTGTTTGTTAGGACTTACCATTGCCCAGACCTGTaGAATTGTGTCGGAAATAAA +
Preference number: 5 (lower is better)
Translates to: AVDFLNNVTRAHLFVRTYHCPDL*NCVGNK
Trigger: TTTATTTCCGACACAATTCAACAGGTCTGGGCAATG...GTAAGTCCTAACAAACAAATGCGCTCTTGTCACATTGTTCAGAAAGTCTACAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CAA 90 bp AGTAAAGTGCTTCAAGCACTTTCTACTCAGACTGCTCAGATGGTATTGTATTTGTTGGATGGGTCGAAATaGCACAAAGCGGTCTTCTTT +
Preference number: 5 (lower is better)
Translates to: SKVLQALSTQTAQMVLYLLDGSK*HKAVFF
Trigger: AAAGAAGACCGCTTTGTGCAATTTCGACCCATCCAA...CAAATACAATACCATCTGAGCAGTCTGAGTAGAAAGTGCTTGAAGCACTTTACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS CCA 90 bp ATATGGCAGTTAAAAGATTTGGATTCCTTAGTCTCCAAGGTAGACTaGGGGGATATTTCAAATTCTACTACTTTAGAGGGAGGTACCAAG +
Preference number: 5 (lower is better)
Translates to: IWQLKDLDSLVSKVD*GDISNSTTLEGGTK
Trigger: CTTGGTACCTCCCTCTAAAGTAGTAGAATTTGAAATATCCCCCCAGTCTACCTTGGAGACTAAGGAATCCAAATCTTTTAACTGCCATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CAA 90 bp CTTTTTCCTTTTATCTGTTCTCATACAGTGCCAGGGTACATCATAAAGATGGCCTGGCAGTTAAAAGATTaGGATTCCTTAGTCTCCAAG +
Preference number: 5 (lower is better)
Translates to: LFPFICSHTVPGYIIKMAWQLKD*DSLVSK
Trigger: CTTGGAGACTAAGGAATCCAAATCTTTTAACTGCCA...GGCCATCTTTATGATGTACCCTGGCACTGTATGAGAACAGATAAAAGGAAAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS-3UTR CAA 90 bp AGTAAAGTGCTTCAAGCACTTTCTACTCAGACTGCTCAGATGGTATTGTATTTGGAATTTCTGTTATGTTaGCCAGCCAATCCCAAAAGT +
Preference number: 5 (lower is better)
Translates to: SKVLQALSTQTAQMVLYLEFLLC*PANPKS
Trigger: ACTTTTGGGATTGGCTGGCAAACATAACAGAAATTC...CAAATACAATACCATCTGAGCAGTCTGAGTAGAAAGTGCTTGAAGCACTTTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS GCA 72 bp TTGTGTATCACTTCTTCACTGTCACAAAATAGCAGCTaGAGCAAGCCTGGGACTACAAGGAGAGGCAGCGGC +
Preference number: 6 (lower is better)
Translates to: LCITSSLSQNSS*SKPGTTRRGSG
Trigger: GCCGCTGCCTCTCCTTGTAGTCCCAGGCTTGCTGCAGCTGCTATTTTGTGACAGTGAAGAAGTGATACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS CAA 72 bp GTTATGTTTGCCAGCCAATCCCAAAAGTTTTTCGTGTaGTCTGCATATGATGGCTTTGGATCTGGAGGCTGT +
Preference number: 6 (lower is better)
Translates to: VMFASQSQKFFV*SAYDGFGSGGC
Trigger: ACAGCCTCCAGATCCAAAGCCATCATATGCAGACAACACGAAAAACTTTTGGGATTGGCTGGCAAACATAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS TCA 72 bp ACTATTGGCCGTCTTTTAGTTCTTGCTAGTTGCTCCTaGATTTCTGTTATGTTTGCCAGCCAATCCCAAAAG +
Preference number: 6 (lower is better)
Translates to: TIGRLLVLASCS*ISVMFASQSQK
Trigger: CTTTTGGGATTGGCTGGCAAACATAACAGAAATTCAGGAGCAACTAGCAAGAACTAAAAGACGGCCAATAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS CCA 72 bp TTAACAAACAGACGCAGAGGACTGGTAATCCTTGAATaGAACAGATTTCCAACCAATGTTTCAGGAACAGTT +
Preference number: 6 (lower is better)
Translates to: LTNRRRGLVILE*NRFPTNVSGTV
Trigger: AACTGTTCCTGAAACATTGGTTGGAAATCTGTTCCATTCAAGGATTACCAGTCCTCTGCGTCTGTTTGTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2
CDS CCA 72 bp TTAAAAGATTTGGATTCCTTAGTCTCCAAGGTAGACTaGGGGGATATTTCAAATTCTACTACTTTAGAGGGA +
Preference number: 6 (lower is better)
Translates to: LKDLDSLVSKVD*GDISNSTTLEG
Trigger: TCCCTCTAAAGTAGTAGAATTTGAAATATCCCCCCAGTCTACCTTGGAGACTAAGGAATCCAAATCTTTTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102945.2