Pregenerated sensors for NXPE2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032028Ensembl transcript IDs: ENSMUST00000034527.14, ENSMUST00000135457.8, ENSMUST00000137976.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTCATACTTAGAGAGACAGAAAGGATAGCTGTAGATGCCATGGTCTaGGACTCAGAGGAAGTGGTGAGTGGGAGTTTAATGGGTTTGATA | + |
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Preference number: 1 (lower is better) Translates to: VILRETERIAVDAMV*DSEEVVSGSLMGLI Trigger: TATCAAACCCATTAAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATCCTTTCTGTCTCTCTAAGTATGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR CCA 90 bp | AATGTGAAGTTGATTTCACACAGTGAGTTTGTGGACTTTGGACTGTaGCTACTGAATCCCAGTGGAATCCAAGCAACAACTGGTTATCAA | + |
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Preference number: 1 (lower is better) Translates to: NVKLISHSEFVDFGL*LLNPSGIQATTGYQ Trigger: TTGATAACCAGTTGTTGCTTGGATTCCACTGGGATTCAGTAGCCACAGTCCAAAGTCCACAAACTCACTGTGTGAAATCAACTTCACATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR CCA 90 bp | TTATATTCACTCTTTAAAAAGGAAGCCATTCTCATACATCTGACATaGGTGGACTTTAAAGGCATTGTGCTAAGTGAAACAAGCCAGGCG | + |
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Preference number: 1 (lower is better) Translates to: LYSLFKKEAILIHLT*VDFKGIVLSETSQA Trigger: CGCCTGGCTTGTTTCACTTAGCACAATGCCTTTAAAGTCCACCCATGTCAGATGTATGAGAATGGCTTCCTTTTTAAAGAGTGAATATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR GCA 90 bp | ATTATTTATATCTTTTATTGCCCTGAACTCATTCTGTTCACAATGTaGTGTAATCCACCTTCCTTTCAAAGTATAGCCACCAGGGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: IIYIFYCPELILFTM*CNPPSFQSIATRGR Trigger: CCTTCCCCTGGTGGCTATACTTTGAAAGGAAGGTGGATTACAGCACATTGTGAACAGAATGAGTTCAGGGCAATAAAAGATATAAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR TCA 90 bp | ATACCCACATTAAGGTCCCTGAAAATGTCCCTTATAATAAGGTTCTaGATGCTTCCGTGGAAGTCACTGAATATCTCTACATGTTCATTT | + |
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Preference number: 1 (lower is better) Translates to: IPTLRSLKMSLIIRF*MLPWKSLNISTCSF Trigger: AAATGAACATGTAGAGATATTCAGTGACTTCCACGGAAGCATTCAGAACCTTATTATAAGGGACATTTTCAGGGACCTTAATGTGGGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR TCA 90 bp | ACGCTTTCAGGCGGATGGACGTCCTCACTGCGATATGCAACTGTCATGTCCCAGCCACTGGCGCAGTGTTaGATCACCCATGAGGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: TLSGGWTSSLRYATVMSQPLAQC*ITHEVN Trigger: ATTTACCTCATGGGTGATTCAACACTGCGCCAGTGG...CTGGGACATGACAGTTGCATATCGCAGTGAGGACGTCCATCCGCCTGAAAGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR CAA 90 bp | TGGCCACACTTCCAGAGGACCCAAGTTCAGTTCCTAGAACCCACATaGGGCAAGTCACAACCACCCCATAATTCCAGCTCCAGAGGATCT | + |
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Preference number: 2 (lower is better) Translates to: WPHFQRTQVQFLEPT*GKSQPPHNSSSRGS Trigger: AGATCCTCTGGAGCTGGAATTATGGGGTGGTTGTGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGTCCTCTGGAAGTGTGGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR-3UTR TCA 90 bp | ACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCACAACCACCCCATAATCAGCTCCAGAGGATCTaGAACCCTCTTCTGGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: TQVQFLEPTLGKSQPPHNQLQRI*NPLLAS Trigger: AGAGGCCAGAAGAGGGTTTCAGATCCTCTGGAGCTG...ATTATGGGGTGGTTGTGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR-3UTR TCA 90 bp | TGGACTGCACATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACATCCGTCAAACACACCTaGTGTTCATTGACAGACACT | + |
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Preference number: 2 (lower is better) Translates to: WTAHAFKVRRVLAGVMATSVKHT*CSLTDT Trigger: AGTGTCTGTCAATGAACATCAGGTGTGTTTGACGGA...TGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATGTGCAGTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR-3UTR GCA 90 bp | AGAGAGAAGAGAGGTAAGGAGGCTAGAGACGTTTTCCCCACCTTAAGACCCTCTGATGGACGTCCTCACTaGGATATGCAACTGTCATGT | + |
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Preference number: 2 (lower is better) Translates to: REKRGKEARDVFPTLRPSDGRPH*DMQLSC Trigger: ACATGACAGTTGCATATCGCAGTGAGGACGTCCATC...AGAGGGTCTTAAGGTGGGGAAAACGTCTCTAGCCTCCTTACCTCTCTTCTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR TCA 90 bp | GATAGCTGTAGATGCCATGGTCTGAGACTCAGAGGAAGTGGTGAGTGGGAGTTTATAATGATGGTGGTGTaGCATAGGACCTCAGTTAGC | + |
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Preference number: 2 (lower is better) Translates to: DSCRCHGLRLRGSGEWEFIMMVV*HRTSVS Trigger: GCTAACTGAGGTCCTATGTCACACCACCATCATTAT...AAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR-3UTR TCA 90 bp | ACGCTTTCAGGCGGATGGACGTCCTCACTGCGATATGCAACTGTCATGTCCCAGAAGGGTCTGAAGTGTTaGCCAAAACTAATGACAATT | + |
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Preference number: 2 (lower is better) Translates to: TLSGGWTSSLRYATVMSQKGLKC*PKLMTI Trigger: AATTGTCATTAGTTTTGGTCAACACTTCAGACCCTT...CTGGGACATGACAGTTGCATATCGCAGTGAGGACGTCCATCCGCCTGAAAGCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR TCA 90 bp | AACAGTCTCTCTATGGCGTTTTTGACGTTGATGGCCCTACGGATGAAAACGTTGGCATGCAAGTACCTATaGGATCAGAGAGAAGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: NSLSMAFLTLMALRMKTLACKYL*DQREER Trigger: CCTCTCTTCTCTCTGATCTCATAGGTACTTGCATGC...CAACGTTTTCATCCGTAGGGCCATCAACGTCAAAAACGCCATAGAGAGACTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAAGAGAGGTAAGGAGGCTAGAGACGTTTTCCCCACCTTAAGACCCTCTAGCGTGTTGAATCACCCATaGGGTAAATCAGTTTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: EKRGKEARDVFPTLRPSSVLNHP*GKSVFL Trigger: CAAGAAAACTGATTTACCTCATGGGTGATTCAACAC...GCTAGAGGGTCTTAAGGTGGGGAAAACGTCTCTAGCCTCCTTACCTCTCTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR TCA 90 bp | GAGGCTAGAGACGTTTTCCCCACCTTAAGACCCTCTAGCAAATGTAGTTTAAGAGTATCCAGAAGGATGTaGGTTTTAAAGGGCCCGGCT | + |
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Preference number: 2 (lower is better) Translates to: EARDVFPTLRPSSKCSLRVSRRM*VLKGPA Trigger: AGCCGGGCCCTTTAAAACTCACATCCTTCTGGATAC...TCTTAAACTACATTTGCTAGAGGGTCTTAAGGTGGGGAAAACGTCTCTAGCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR CCA 90 bp | TGGACTGCACATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACACTCATACATCTGACATaGGTGGACTTTAAAGGCATT | + |
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Preference number: 2 (lower is better) Translates to: WTAHAFKVRRVLAGVMATLIHLT*VDFKGI Trigger: AATGCCTTTAAAGTCCACCCATGTCAGATGTATGAG...TGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATGTGCAGTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR-3UTR CCA 90 bp | AAGGAGGCTAGAGACGTTTTCCCCACCTTAAGACCCTCTAGCAAATGTAGTTTACTGTCTCCTGCCACCTaGTCAATTTCCCGAGGAATA | + |
|
Preference number: 2 (lower is better) Translates to: KEARDVFPTLRPSSKCSLLSPAT*SISRGI Trigger: TATTCCTCGGGAAATTGACCAGGTGGCAGGAGACAG...TAAACTACATTTGCTAGAGGGTCTTAAGGTGGGGAAAACGTCTCTAGCCTCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR TCA 90 bp | ACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCACAACCACCCCATAATCCATTCTCATACATCTaGCATGGGTGGACTTTAAAG | + |
|
Preference number: 2 (lower is better) Translates to: TQVQFLEPTLGKSQPPHNPFSYI*HGWTLK Trigger: CTTTAAAGTCCACCCATGTCAGATGTATGAGAATGG...ATTATGGGGTGGTTGTGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR-3UTR CCA 90 bp | AGAACATGCCAATCTGACTTTCAATCACGCTTTCAGGCGGATGGACGTCCTCACTCTTTTTCTTCTTGTTaGTCTTGTTGTTACACGGCG | + |
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Preference number: 2 (lower is better) Translates to: RTCQSDFQSRFQADGRPHSFSSC*SCCYTA Trigger: CGCCGTGTAACAACAAGACCAACAAGAAGAAAAAGA...GTGAGGACGTCCATCCGCCTGAAAGCGTGATTGAAAGTCAGATTGGCATGTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR TCA 90 bp | AGCCAGGCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCGCATGCAAGTACCTATaGGATCAGAGAGAAGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: SQARVQRLLLLYEMFRTVACKYL*DQREER Trigger: CCTCTCTTCTCTCTGATCTCATAGGTACTTGCATGC...GACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGCCTGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR-3UTR GCA 90 bp | AACAGTCTCTCTATGGCGTTTTTGACGTTGATGGCCCTACGGATGAAAACGTTGAAAACTAATGACAATTaGTGTACCACTGTCTCCTGC | + |
|
Preference number: 2 (lower is better) Translates to: NSLSMAFLTLMALRMKTLKTNDN*CTTVSC Trigger: GCAGGAGACAGTGGTACAGCAATTGTCATTAGTTTT...CAACGTTTTCATCCGTAGGGCCATCAACGTCAAAAACGCCATAGAGAGACTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR CAA 90 bp | ACGCTTTCAGGCGGATGGACGTCCTCACTGCGATATGCAACTGTCATGTCCCAGTTCTTGTTGGTCTTGTaGTTACACGGCGAGACCACG | + |
|
Preference number: 3 (lower is better) Translates to: TLSGGWTSSLRYATVMSQFLLVL*LHGETT Trigger: CGTGGTCTCGCCGTGTAACAACAAGACCAACAAGAA...CTGGGACATGACAGTTGCATATCGCAGTGAGGACGTCCATCCGCCTGAAAGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR CCA 72 bp | CATAATTCCAGCTCCAGAGGATCTGAAACCCTCTTCTaGCCTCTGCAAGACATCCGTCAAACACACCTGATG | + |
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Preference number: 3 (lower is better) Translates to: HNSSSRGSETLF*PLQDIRQTHLM Trigger: CATCAGGTGTGTTTGACGGATGTCTTGCAGAGGCCAGAAGAGGGTTTCAGATCCTCTGGAGCTGGAATTATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR TCA 72 bp | CACACAGTGAGTTTGTGGACTTTGGACTGTGGCTACTaGATCCCAGTGGAATCCAAGCAACAACTGGTTATC | + |
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Preference number: 3 (lower is better) Translates to: HTVSLWTLDCGY*IPVESKQQLVI Trigger: GATAACCAGTTGTTGCTTGGATTCCACTGGGATTCAGTAGCCACAGTCCAAAGTCCACAAACTCACTGTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR-3UTR CAA 90 bp | AGAACATGCCAATCTGACTTTCAATCACGCTTTCAGGCGGATGGACGTCCTCACTTCTTTTTCTTCTTGTaGGTCTTGTTGTTACACGGC | + |
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Preference number: 3 (lower is better) Translates to: RTCQSDFQSRFQADGRPHFFFFL*VLLLHG Trigger: GCCGTGTAACAACAAGACCAACAAGAAGAAAAAGAA...GTGAGGACGTCCATCCGCCTGAAAGCGTGATTGAAAGTCAGATTGGCATGTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR-3UTR CAA 90 bp | AGAACATGCCAATCTGACTTTCAATCACGCTTTCAGGCGGATGGACGTCCTCACAAAGGGTCTGAAGTGTaGACCAAAACTAATGACAAT | + |
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Preference number: 3 (lower is better) Translates to: RTCQSDFQSRFQADGRPHKGSEV*TKTNDN Trigger: ATTGTCATTAGTTTTGGTCAACACTTCAGACCCTTT...GTGAGGACGTCCATCCGCCTGAAAGCGTGATTGAAAGTCAGATTGGCATGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| 3UTR CCA 72 bp | GTTTGTGGACTTTGGACTGTGGCTACTGAATCCCAGTaGAATCCAAGCAACAACTGGTTATCAAATCTTAAG | + |
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Preference number: 3 (lower is better) Translates to: VCGLWTVATESQ*NPSNNWLSNLK Trigger: CTTAAGATTTGATAACCAGTTGTTGCTTGGATTCCACTGGGATTCAGTAGCCACAGTCCAAAGTCCACAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR GCA 72 bp | ATCTTTTATTGCCCTGAACTCATTCTGTTCACAATGTaGTGTAATCCACCTTCCTTTCAAAGTATAGCCACC | + |
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Preference number: 3 (lower is better) Translates to: IFYCPELILFTM*CNPPSFQSIAT Trigger: GGTGGCTATACTTTGAAAGGAAGGTGGATTACAGCACATTGTGAACAGAATGAGTTCAGGGCAATAAAAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| CDS-3UTR GCA 90 bp | CCACACTTCCAGAGGACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCACTTTCCAGAAGCGCCTaGCTTCAGGGCTGGGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: PHFQRTQVQFLEPTLGKSLSRSA*LQGWGG Trigger: TCCTCCCCAGCCCTGAAGGCAGGCGCTTCTGGAAAG...TGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGTCCTCTGGAAGTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | TGGACTGCACATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACATCTCCAGGATTGCTGTaGCTGCCAGCTCTGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: WTAHAFKVRRVLAGVMATSPGLL*LPALPP Trigger: TGGAGGCAGAGCTGGCAGTCACAGCAATCCTGGAGA...TGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATGTGCAGTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR GCA 90 bp | GATAGCTGTAGATGCCATGGTCTGAGACTCAGAGGAAGTGGTGAGTGGGAGTTTTGTGACTGCCAGCTCTaGCTCCACGGAGGCTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: DSCRCHGLRLRGSGEWEFCDCQL*LHGGWC Trigger: ACACCAGCCTCCGTGGAGGCAGAGCTGGCAGTCACA...AAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR GCA 90 bp | TGGACTGCACATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACACAGGATTGCTGTGACTaGCAGCTCTGCCTCCACGGA | + |
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Preference number: 4 (lower is better) Translates to: WTAHAFKVRRVLAGVMATQDCCD*QLCLHG Trigger: TCCGTGGAGGCAGAGCTGGCAGTCACAGCAATCCTG...TGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATGTGCAGTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CCA 90 bp | CCACACTTCCAGAGGACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCATTCTTGCTCGTCATGTaGGTCAGGGCCTCACAGGGA | + |
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Preference number: 4 (lower is better) Translates to: PHFQRTQVQFLEPTLGKSFLLVM*VRASQG Trigger: TCCCTGTGAGGCCCTGACCCACATGACGAGCAAGAA...TGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGTCCTCTGGAAGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | TGGACTGCACATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACACGAGCATCCAGATATTaGCACAGCTCCGCACTTGTG | + |
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Preference number: 4 (lower is better) Translates to: WTAHAFKVRRVLAGVMATRASRY*HSSALV Trigger: CACAAGTGCGGAGCTGTGTCAATATCTGGATGCTCG...TGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATGTGCAGTCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CCA 90 bp | TGGACTGCACATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACATGCCTCCACGGAGGCTaGTGTGTTCTTAAGCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: WTAHAFKVRRVLAGVMATCLHGG*CVLKLF Trigger: GAAGAGCTTAAGAACACACCAGCCTCCGTGGAGGCA...TGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATGTGCAGTCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | CCACACTTCCAGAGGACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCAGTATCCAGAAGGATGTaGGTTTTAAAGGGCCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: PHFQRTQVQFLEPTLGKSVSRRM*VLKGPA Trigger: AGCCGGGCCCTTTAAAACTCACATCCTTCTGGATAC...TGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGTCCTCTGGAAGTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR GCA 90 bp | GATAGCTGTAGATGCCATGGTCTGAGACTCAGAGGAAGTGGTGAGTGGGAGTTTTGTACCACTGTCTCCTaGCACCTGGTCAATTTCCCG | + |
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Preference number: 4 (lower is better) Translates to: DSCRCHGLRLRGSGEWEFCTTVS*HLVNFP Trigger: CGGGAAATTGACCAGGTGGCAGGAGACAGTGGTACA...AAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR CAA 72 bp | TTCCAGAGGACCCAAGTTCAGTTCCTAGAACCCACATaGGGCAAGTCACAACCACCCCATAATTCCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: FQRTQVQFLEPT*GKSQPPHNSSS Trigger: GGAGCTGGAATTATGGGGTGGTTGTGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGTCCTCTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | CCACACTTCCAGAGGACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCAGAACAGTTTCTGAGCTaGGGCATTTGGAAGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: PHFQRTQVQFLEPTLGKSEQFLS*GIWKRR Trigger: TCTTCGCTTCCAAATGCCTCAGCTCAGAAACTGTTC...TGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGTCCTCTGGAAGTGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | AGAACATGCCAATCTGACTTTCAATCACGCTTTCAGGCGGATGGACGTCCTCACGAACAGTTTCTGAGCTaGGGCATTTGGAAGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: RTCQSDFQSRFQADGRPHEQFLS*GIWKRR Trigger: TCTTCGCTTCCAAATGCCTCAGCTCAGAAACTGTTC...GTGAGGACGTCCATCCGCCTGAAAGCGTGATTGAAAGTCAGATTGGCATGTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| CDS-3UTR TCA 90 bp | GATAGCTGTAGATGCCATGGTCTGAGACTCAGAGGAAGTGGTGAGTGGGAGTTTATCAGGAACAGTTTCTaGGCTGAGGCATTTGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: DSCRCHGLRLRGSGEWEFIRNSF*AEAFGS Trigger: GCTTCCAAATGCCTCAGCTCAGAAACTGTTCCTGAT...AAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR GCA 90 bp | GATAGCTGTAGATGCCATGGTCTGAGACTCAGAGGAAGTGGTGAGTGGGAGTTTGATGGACGTCCTCACTaGGATATGCAACTGTCATGT | + |
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Preference number: 4 (lower is better) Translates to: DSCRCHGLRLRGSGEWEFDGRPH*DMQLSC Trigger: ACATGACAGTTGCATATCGCAGTGAGGACGTCCATC...AAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | GATAGCTGTAGATGCCATGGTCTGAGACTCAGAGGAAGTGGTGAGTGGGAGTTTATGCGGTTGTTTAAGTaGACCATAAACTCTGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: DSCRCHGLRLRGSGEWEFMRLFK*TINSVW Trigger: CCACACAGAGTTTATGGTTCACTTAAACAACCGCAT...AAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | GAGGCTAGAGACGTTTTCCCCACCTTAAGACCCTCTAGCAAATGTAGTTTAAGAATCAGGAACAGTTTCTaGGCTGAGGCATTTGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: EARDVFPTLRPSSKCSLRIRNSF*AEAFGS Trigger: GCTTCCAAATGCCTCAGCTCAGAAACTGTTCCTGAT...TCTTAAACTACATTTGCTAGAGGGTCTTAAGGTGGGGAAAACGTCTCTAGCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| CDS-3UTR TCA 90 bp | ATCTTTTCTCTGAGCAGATCATTAAAGCTATGTGTCTCTGGACTGCACATGCCTGCTTCTCCTCAAGGCTaGGGTAGGAGATGTTACTGT | + |
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Preference number: 4 (lower is better) Translates to: IFSLSRSLKLCVSGLHMPASPQG*GRRCYC Trigger: ACAGTAACATCTCCTACCTCAGCCTTGAGGAGAAGC...AGGCATGTGCAGTCCAGAGACACATAGCTTTAATGATCTGCTCAGAGAAAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | GATAGCTGTAGATGCCATGGTCTGAGACTCAGAGGAAGTGGTGAGTGGGAGTTTGTGTTGAATCACCCATaGGGTAAATCAGTTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: DSCRCHGLRLRGSGEWEFVLNHP*GKSVFL Trigger: CAAGAAAACTGATTTACCTCATGGGTGATTCAACAC...AAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR GCA 90 bp | TGGACTGCACATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACAATTCTGTTCACAATGTaGTGTAATCCACCTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: WTAHAFKVRRVLAGVMATILFTM*CNPPSF Trigger: AAAGGAAGGTGGATTACAGCACATTGTGAACAGAAT...TGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATGTGCAGTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CCA 90 bp | CCACACTTCCAGAGGACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCAACCATAAACTCTGTGTaGTCTTTTGAAGTCATGAAG | + |
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Preference number: 4 (lower is better) Translates to: PHFQRTQVQFLEPTLGKSTINSV*SFEVMK Trigger: CTTCATGACTTCAAAAGACCACACAGAGTTTATGGT...TGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGTCCTCTGGAAGTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CCA 90 bp | TTAGATTGTTTTGTGCATGCAAGTACCTATGAGATCAGAGAGAAGAGAGGTAAGCTGGTGGTGCTGCTATaGGTCTGGAAAGGTCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LDCFVHASTYEIREKRGKLVVLL*VWKGLG Trigger: ACCCAGACCTTTCCAGACCCATAGCAGCACCACCAG...CTTACCTCTCTTCTCTCTGATCTCATAGGTACTTGCATGCACAAAACAATCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CCA 90 bp | ATCTTTTCTCTGAGCAGATCATTAAAGCTATGTGTCTCTGGACTGCACATGCCTCTGTCTCCTGCCACCTaGTCAATTTCCCGAGGAATA | + |
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Preference number: 4 (lower is better) Translates to: IFSLSRSLKLCVSGLHMPLSPAT*SISRGI Trigger: TATTCCTCGGGAAATTGACCAGGTGGCAGGAGACAG...AGGCATGTGCAGTCCAGAGACACATAGCTTTAATGATCTGCTCAGAGAAAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR CAA 72 bp | CTTCGTAAGAACAGTCTCTCTATGGCGTTTTTGACGTaGATGGCCCTACGGATGAAAACGTTGATGGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: LRKNSLSMAFLT*MALRMKTLMGK Trigger: CTTTCCCATCAACGTTTTCATCCGTAGGGCCATCAACGTCAAAAACGCCATAGAGAGACTGTTCTTACGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135457.8 |
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| CDS-3UTR TCA 90 bp | GATAGCTGTAGATGCCATGGTCTGAGACTCAGAGGAAGTGGTGAGTGGGAGTTTAAGGGTCTGAAGTGTTaGCCAAAACTAATGACAATT | + |
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Preference number: 4 (lower is better) Translates to: DSCRCHGLRLRGSGEWEFKGLKC*PKLMTI Trigger: AATTGTCATTAGTTTTGGTCAACACTTCAGACCCTT...AAACTCCCACTCACCACTTCCTCTGAGTCTCAGACCATGGCATCTACAGCTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | AGCCAGGCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCCTCTGTGTGGTCTTTTaGAGTCATGAAGACAACCCA | + |
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Preference number: 4 (lower is better) Translates to: SQARVQRLLLLYEMFRTVLCVVF*SHEDNP Trigger: TGGGTTGTCTTCATGACTTCAAAAGACCACACAGAG...GACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGCCTGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | GCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCATACTTCCACTGGCGCAGTGTTaGATCACCCATGAGGTAAAT | + |
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Preference number: 4 (lower is better) Translates to: ARVQRLLLLYEMFRTVILPLAQC*ITHEVN Trigger: ATTTACCTCATGGGTGATTCAACACTGCGCCAGTGG...AAGTATGACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR GCA 90 bp | AGCCAGGCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCTTAAGCTCTTCCGAGTaGAAGAACTCCTTGAAGATG | + |
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Preference number: 4 (lower is better) Translates to: SQARVQRLLLLYEMFRTVLSSSE*KNSLKM Trigger: CATCTTCAAGGAGTTCTTGCACTCGGAAGAGCTTAA...GACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGCCTGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CCA 90 bp | ATCTTTTCTCTGAGCAGATCATTAAAGCTATGTGTCTCTGGACTGCACATGCCTTACCAAAATAGTCCTTaGCCACCAGTAAGACGTTCA | + |
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Preference number: 4 (lower is better) Translates to: IFSLSRSLKLCVSGLHMPYQNSP*PPVRRS Trigger: TGAACGTCTTACTGGTGGCCAAGGACTATTTTGGTA...AGGCATGTGCAGTCCAGAGACACATAGCTTTAATGATCTGCTCAGAGAAAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR TCA 90 bp | AGCCAGGCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCAAGAACATGCCAATCTaGCTTTCAATCACGCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: SQARVQRLLLLYEMFRTVKNMPI*LSITLS Trigger: TGAAAGCGTGATTGAAAGTCAGATTGGCATGTTCTT...GACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGCCTGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR GCA 90 bp | AGCCAGGCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCAAAACTAATGACAATTaGTGTACCACTGTCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: SQARVQRLLLLYEMFRTVKTNDN*CTTVSC Trigger: GCAGGAGACAGTGGTACAGCAATTGTCATTAGTTTT...GACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGCCTGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CCA 90 bp | AGCCAGGCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCTCTTTTTCTTCTTGTTaGTCTTGTTGTTACACGGCG | + |
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Preference number: 4 (lower is better) Translates to: SQARVQRLLLLYEMFRTVSFSSC*SCCYTA Trigger: CGCCGTGTAACAACAAGACCAACAAGAAGAAAAAGA...GACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGCCTGGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CCA 90 bp | AGCCAGGCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCGTGCCATTAAGAAACTaGCCAGTGAAGATAATTTTG | + |
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Preference number: 4 (lower is better) Translates to: SQARVQRLLLLYEMFRTVVPLRN*PVKIIL Trigger: CAAAATTATCTTCACTGGCCAGTTTCTTAATGGCAC...GACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGCCTGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| 3UTR CAA 72 bp | GACTCAGAGGAAGTGGTGAGTGGGAGTTTAATGGGTTaGATATTTCTATTTGGAATGAATAAAACTGTTCAA | + |
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Preference number: 4 (lower is better) Translates to: DSEEVVSGSLMG*IFLFGMNKTVQ Trigger: TTGAACAGTTTTATTCATTCCAAATAGAAATATCAAACCCATTAAACTCCCACTCACCACTTCCTCTGAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS CCA 90 bp | CTTCTCCAGGATTGCTGTGACTGCCAGCTCTGCCTCCACGGAGGCTaGTGTGTTCTTAAGCTCTTCCGAGTGCAAGAACTCCTTGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: LLQDCCDCQLCLHGG*CVLKLFRVQELLED Trigger: ATCTTCAAGGAGTTCTTGCACTCGGAAGAGCTTAAGAACACACCAGCCTCCGTGGAGGCAGAGCTGGCAGTCACAGCAATCCTGGAGAAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034527.14 ENSMUST00000137976.2 |
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| CDS-3UTR CAA 90 bp | CATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACACTTCCAGAGTTCTTGTTGGTCTTGTaGTTACACGGCGAGACCACG | + |
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Preference number: 5 (lower is better) Translates to: HAFKVRRVLAGVMATLPEFLLVL*LHGETT Trigger: CGTGGTCTCGCCGTGTAACAACAAGACCAACAAGAA...CTCTGGAAGTGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CAA 90 bp | TGGACTGCACATGCCTTTAAAGTAAGGAGAGTGCTGGCTGGAGTGATGGCCACAATGGCGTTTTTGACGTaGATGGCCCTACGGATGAAA | + |
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Preference number: 5 (lower is better) Translates to: WTAHAFKVRRVLAGVMATMAFLT*MALRMK Trigger: TTTCATCCGTAGGGCCATCAACGTCAAAAACGCCAT...TGTGGCCATCACTCCAGCCAGCACTCTCCTTACTTTAAAGGCATGTGCAGTCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CAA 90 bp | ACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCACAACCACCCCATAATTCGAGCATCCAGATATaGACACAGCTCCGCACTTGT | + |
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Preference number: 5 (lower is better) Translates to: TQVQFLEPTLGKSQPPHNSSIQI*TQLRTC Trigger: ACAAGTGCGGAGCTGTGTCAATATCTGGATGCTCGA...ATTATGGGGTGGTTGTGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CAA 90 bp | GCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCATACTTGTAGCTGTGCTCTGTTaGGCGCTGGTGGTGCTGCTA | + |
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Preference number: 5 (lower is better) Translates to: ARVQRLLLLYEMFRTVILVAVLC*ALVVLL Trigger: TAGCAGCACCACCAGCGCCAAACAGAGCACAGCTAC...AAGTATGACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS-3UTR CAA 90 bp | CCACACTTCCAGAGGACCCAAGTTCAGTTCCTAGAACCCACATTGGGCAAGTCAAAAGGGTCTGAAGTGTaGACCAAAACTAATGACAAT | + |
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Preference number: 5 (lower is better) Translates to: PHFQRTQVQFLEPTLGKSKGSEV*TKTNDN Trigger: ATTGTCATTAGTTTTGGTCAACACTTCAGACCCTTT...TGACTTGCCCAATGTGGGTTCTAGGAACTGAACTTGGGTCCTCTGGAAGTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS TCA 90 bp | ACAACCCAGAAAGCAAAGATAATTAACACTATCAGGAACAGTTTCTaGGCTGAGGCATTTGGAAGCGAAGAGAGCAGTATCCTAGGACTA | + |
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Preference number: 5 (lower is better) Translates to: TTQKAKIINTIRNSF*AEAFGSEESSILGL Trigger: TAGTCCTAGGATACTGCTCTCTTCGCTTCCAAATGCCTCAGCTCAGAAACTGTTCCTGATAGTGTTAATTATCTTTGCTTTCTGGGTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034527.14 ENSMUST00000135457.8 |
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| CDS TCA 90 bp | ACAACCCAGAAAGCAAAGATAATTAACACTATCAGGAACAGTTTCTaGGCTGAGGCATTTGGAAGCGAAGAGAGCAGTATCCTTGGAATG | + |
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Preference number: 5 (lower is better) Translates to: TTQKAKIINTIRNSF*AEAFGSEESSILGM Trigger: CATTCCAAGGATACTGCTCTCTTCGCTTCCAAATGCCTCAGCTCAGAAACTGTTCCTGATAGTGTTAATTATCTTTGCTTTCTGGGTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137976.2 |
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| CDS-3UTR CAA 90 bp | AGCCAGGCGCGAGTGCAGCGACTTTTATTATTATATGAGATGTTTAGAACAGTCTTCTTTTTCTTCTTGTaGGTCTTGTTGTTACACGGC | + |
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Preference number: 5 (lower is better) Translates to: SQARVQRLLLLYEMFRTVFFFFL*VLLLHG Trigger: GCCGTGTAACAACAAGACCAACAAGAAGAAAAAGAA...GACTGTTCTAAACATCTCATATAATAATAAAAGTCGCTGCACTCGCGCCTGGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034527.14 |
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| CDS CCA 72 bp | GATTGCTGTGACTGCCAGCTCTGCCTCCACGGAGGCTaGTGTGTTCTTAAGCTCTTCCGAGTGCAAGAACTC | + |
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Preference number: 6 (lower is better) Translates to: DCCDCQLCLHGG*CVLKLFRVQEL Trigger: GAGTTCTTGCACTCGGAAGAGCTTAAGAACACACCAGCCTCCGTGGAGGCAGAGCTGGCAGTCACAGCAATC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034527.14 ENSMUST00000137976.2 |
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| CDS GCA 72 bp | TCCACGGAGGCTGGTGTGTTCTTAAGCTCTTCCGAGTaGAAGAACTCCTTGAAGATGCTCCATCGTCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: STEAGVFLSSSE*KNSLKMLHRLR Trigger: TCTGAGACGATGGAGCATCTTCAAGGAGTTCTTGCACTCGGAAGAGCTTAAGAACACACCAGCCTCCGTGGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034527.14 ENSMUST00000137976.2 |
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| CDS CAA 72 bp | GGTGTGTTCTTAAGCTCTTCCGAGTGCAAGAACTCCTaGAAGATGCTCCATCGTCTCAGAATGATGCGGTTG | + |
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Preference number: 6 (lower is better) Translates to: GVFLSSSECKNS*KMLHRLRMMRL Trigger: CAACCGCATCATTCTGAGACGATGGAGCATCTTCAAGGAGTTCTTGCACTCGGAAGAGCTTAAGAACACACC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034527.14 ENSMUST00000137976.2 |
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