RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NXNL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021396

Ensembl transcript IDs: ENSMUST00000021828.6

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTAGGACCCACAGGGGGCAGACGTAGTTCTTTCCTGAGCAGTTTATaGTCTCTGTCACAGCATGGTGACTCTACAATGACATTCCTCAGC +
Preference number: 1 (lower is better)
Translates to: LGPTGGRRSSFLSSL*SLSQHGDSTMTFLS
Trigger: GCTGAGGAATGTCATTGTAGAGTCACCATGCTGTGACAGAGAGCATAAACTGCTCAGGAAAGAACTACGTCTGCCCCCTGTGGGTCCTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
3UTR-3UTR TCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAATGGTGACTCTACAATaGCATTCCTCAGCAGAGAAG +
Preference number: 2 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAMVTLQ*HSSAEK
Trigger: CTTCTCTGCTGAGGAATGTCATTGTAGAGTCACCAT...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
3UTR-3UTR TCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAGACGTAGTTCTTTCCTaGGCAGTTTATGCTCTCTGT +
Preference number: 2 (lower is better)
Translates to: TSIGQFIKEISCRKEHLADVVLS*AVYALC
Trigger: ACAGAGAGCATAAACTGCTCAGGAAAGAACTACGTC...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
3UTR-3UTR GCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCATTCCTGAGCAGTTTATaGTCTCTGTCACAGCATGGT +
Preference number: 2 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAFLSSL*SLSQHG
Trigger: ACCATGCTGTGACAGAGAGCATAAACTGCTCAGGAA...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
3UTR-3UTR GCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCACTTTTTGAAGATAGTTaGCCTGAACTTCCAGCAACT +
Preference number: 2 (lower is better)
Translates to: TSIGQFIKEISCRKEHLALFEDS*PELPAT
Trigger: AGTTGCTGGAAGTTCAGGGCAACTATCTTCAAAAAG...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
3UTR GCA 72 bp ACAGGGGGCAGACGTAGTTCTTTCCTGAGCAGTTTATaGTCTCTGTCACAGCATGGTGACTCTACAATGACA +
Preference number: 3 (lower is better)
Translates to: TGGRRSSFLSSL*SLSQHGDSTMT
Trigger: TGTCATTGTAGAGTCACCATGCTGTGACAGAGAGCATAAACTGCTCAGGAAAGAACTACGTCTGCCCCCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR TCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCACGCAGAGCAGCGGCGTaGAGTCGCGGCTGGGCGAGC +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLARRAAA*SRGWAS
Trigger: GCTCGCCCAGCCGCGACTTCACGCCGCTGCTCTGCG...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR GCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCACGGCCTCCACCACCGTaGCCTCCCGGGTCACCAGGC +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLARPPPP*PPGSPG
Trigger: GCCTGGTGACCCGGGAGGGCACGGTGGTGGAGGCCG...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
3UTR CAA 72 bp ATTCCTCAGCAGAGAAGGGAACCAGCTAAGCCCTTTTaGAAGATAGTTGCCCTGAACTTCCAGCAACTGCCC +
Preference number: 4 (lower is better)
Translates to: IPQQRREPAKPF*KIVALNFQQLP
Trigger: GGGCAGTTGCTGGAAGTTCAGGGCAACTATCTTCAAAAAGGGCTTAGCTGGTTCCCTTCTCTGCTGAGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR GCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAGCCAGCCAGGAGCCGTaGAGCTCGCGCATGAAGTCC +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAASQEP*SSRMKS
Trigger: GGACTTCATGCGCGAGCTGCACGGCTCCTGGCTGGC...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR GCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAGCTACCACCTTGTTCTaGAGCGCCACCTCGGCCTCC +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAATTLF*SATSAS
Trigger: GGAGGCCGAGGTGGCGCTGCAGAACAAGGTGGTAGC...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR GCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAGTCGTGGAAGGGCAATaGCAGCCAGGAGCCGTGCAG +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAVVEGQ*QPGAVQ
Trigger: CTGCACGGCTCCTGGCTGGCATTGCCCTTCCACGAC...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR TCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCACGTGCAGCTCGCGCATaGAGTCCAACATCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLARAARA*SPTSPP
Trigger: CGGAGGAGATGTTGGACTTCATGCGCGAGCTGCACG...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR TCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAGCTTCCACCCAGTTCTaGAAGCAAGCTAGCCCGCGC +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAASTQF*KQASPR
Trigger: GCGCGGGCTAGCTTGCTTTCAGAACTGGGTGGAAGC...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR GCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCACCGCGCTCTCGGATCTaGTTCCGCCCTTTGTTGGTG +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAPRSRI*FRPLLV
Trigger: CACCAACAAAGGGCGGAAGCAGATCCGAGAGCGCGG...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR GCA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAACATCTCCTCCGCACTaGCGTCTGCCGACACGAAAA +
Preference number: 4 (lower is better)
Translates to: TSIGQFIKEISCRKEHLATSPPH*RLPTRK
Trigger: TTTTCGTGTCGGCAGACGGCAGTGCGGAGGAGATGT...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS GCA 90 bp GGCGAGCACCGGCCCGCCGCAAAGTACAAAGCTACCACCTTGTTCTaGAGCGCCACCTCGGCCTCCACCACCGTGCCCTCCCGGGTCACC +
Preference number: 5 (lower is better)
Translates to: GEHRPAAKYKATTLF*SATSASTTVPSRVT
Trigger: GGTGACCCGGGAGGGCACGGTGGTGGAGGCCGAGGTGGCGCTGCAGAACAAGGTGGTAGCTTTGTACTTTGCGGCGGGCCGGTGCTCGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS TCA 90 bp GCGCCTCGCTCACCAGCTCCGTGTAGAAGTCGCAGAGCAGCGGCGTaGAGTCGCGGCTGGGCGAGCACCGGCCCGCCGCAAAGTACAAAG +
Preference number: 5 (lower is better)
Translates to: APRSPAPCRSRRAAA*SRGWASTGPPQSTK
Trigger: CTTTGTACTTTGCGGCGGGCCGGTGCTCGCCCAGCCGCGACTTCACGCCGCTGCTCTGCGACTTCTACACGGAGCTGGTGAGCGAGGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS GCA 90 bp GTGCAGCTCGCGCATGAAGTCCAACATCTCCTCCGCACTGCCGTCTaGCGACACGAAAACCACCTCGAAGGGAGCGGGCCGCCGCGCCTC +
Preference number: 5 (lower is better)
Translates to: VQLAHEVQHLLRTAV*RHENHLEGSGPPRL
Trigger: GAGGCGCGGCGGCCCGCTCCCTTCGAGGTGGTTTTCGTGTCGGCAGACGGCAGTGCGGAGGAGATGTTGGACTTCATGCGCGAGCTGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS GCA 90 bp GTACCTCTTCTTCAGTTCATGCCGGTAGGGGTCGTGGAAGGGCAATaGCAGCCAGGAGCCGTGCAGCTCGCGCATGAAGTCCAACATCTC +
Preference number: 5 (lower is better)
Translates to: VPLLQFMPVGVVEGQ*QPGAVQLAHEVQHL
Trigger: GAGATGTTGGACTTCATGCGCGAGCTGCACGGCTCCTGGCTGGCATTGCCCTTCCACGACCCCTACCGGCATGAACTGAAGAAGAGGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS GCA 90 bp TCTCGGATCTGCTTCCGCCCTTTGTTGGTGATGACAGCTCCGTTCTaGTTGATGACCACCAGCTTGGGGATGGCGGTGATTTCGTACCTC +
Preference number: 5 (lower is better)
Translates to: SRICFRPLLVMTAPF*LMTTSLGMAVISYL
Trigger: GAGGTACGAAATCACCGCCATCCCCAAGCTGGTGGTCATCAAGCAGAACGGAGCTGTCATCACCAACAAAGGGCGGAAGCAGATCCGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR CAA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAACAGCTCCGTTCTGCTaGATGACCACCAGCTTGGGG +
Preference number: 5 (lower is better)
Translates to: TSIGQFIKEISCRKEHLATAPFC*MTTSLG
Trigger: CCCCAAGCTGGTGGTCATCAAGCAGAACGGAGCTGT...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR CAA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCATACAAAGCTACCACCTaGTTCTGCAGCGCCACCTCG +
Preference number: 5 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAYKATT*FCSATS
Trigger: CGAGGTGGCGCTGCAGAACAAGGTGGTAGCTTTGTA...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR CAA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCATGCTTCCGCCCTTTGTaGGTGATGACAGCTCCGTTC +
Preference number: 5 (lower is better)
Translates to: TSIGQFIKEISCRKEHLACFRPL*VMTAPF
Trigger: GAACGGAGCTGTCATCACCAACAAAGGGCGGAAGCA...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS-3UTR CAA 90 bp ACCTCCATAGGTCAATTTATCAAAGAAATTTCCTGTAGGAAAGAGCATCTTGCAATCTGCTTCCGCCCTTaGTTGGTGATGACAGCTCCG +
Preference number: 5 (lower is better)
Translates to: TSIGQFIKEISCRKEHLAICFRP*LVMTAP
Trigger: CGGAGCTGTCATCACCAACAAAGGGCGGAAGCAGAT...TGCAAGATGCTCTTTCCTACAGGAAATTTCTTTGATAAATTGACCTATGGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS CAA 90 bp CGGCTGGGCGAGCACCGGCCCGCCGCAAAGTACAAAGCTACCACCTaGTTCTGCAGCGCCACCTCGGCCTCCACCACCGTGCCCTCCCGG +
Preference number: 6 (lower is better)
Translates to: RLGEHRPAAKYKATT*FCSATSASTTVPSR
Trigger: CCGGGAGGGCACGGTGGTGGAGGCCGAGGTGGCGCTGCAGAACAAGGTGGTAGCTTTGTACTTTGCGGCGGGCCGGTGCTCGCCCAGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS TCA 72 bp TCACCAGCTCCGTGTAGAAGTCGCAGAGCAGCGGCGTaGAGTCGCGGCTGGGCGAGCACCGGCCCGCCGCAA +
Preference number: 6 (lower is better)
Translates to: SPAPCRSRRAAA*SRGWASTGPPQ
Trigger: TTGCGGCGGGCCGGTGCTCGCCCAGCCGCGACTTCACGCCGCTGCTCTGCGACTTCTACACGGAGCTGGTGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS GCA 72 bp CGGCCCGCCGCAAAGTACAAAGCTACCACCTTGTTCTaGAGCGCCACCTCGGCCTCCACCACCGTGCCCTCC +
Preference number: 6 (lower is better)
Translates to: RPAAKYKATTLF*SATSASTTVPS
Trigger: GGAGGGCACGGTGGTGGAGGCCGAGGTGGCGCTGCAGAACAAGGTGGTAGCTTTGTACTTTGCGGCGGGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS GCA 72 bp GCGCATGAAGTCCAACATCTCCTCCGCACTGCCGTCTaGCGACACGAAAACCACCTCGAAGGGAGCGGGCCG +
Preference number: 6 (lower is better)
Translates to: AHEVQHLLRTAV*RHENHLEGSGP
Trigger: CGGCCCGCTCCCTTCGAGGTGGTTTTCGTGTCGGCAGACGGCAGTGCGGAGGAGATGTTGGACTTCATGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS GCA 72 bp CTTCAGTTCATGCCGGTAGGGGTCGTGGAAGGGCAATaGCAGCCAGGAGCCGTGCAGCTCGCGCATGAAGTC +
Preference number: 6 (lower is better)
Translates to: LQFMPVGVVEGQ*QPGAVQLAHEV
Trigger: GACTTCATGCGCGAGCTGCACGGCTCCTGGCTGGCATTGCCCTTCCACGACCCCTACCGGCATGAACTGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS CAA 72 bp GCTAGCCCGCGCTCTCGGATCTGCTTCCGCCCTTTGTaGGTGATGACAGCTCCGTTCTGCTTGATGACCACC +
Preference number: 6 (lower is better)
Translates to: ASPRSRICFRPL*VMTAPFCLMTT
Trigger: GGTGGTCATCAAGCAGAACGGAGCTGTCATCACCAACAAAGGGCGGAAGCAGATCCGAGAGCGCGGGCTAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS CAA 72 bp CAAGCTAGCCCGCGCTCTCGGATCTGCTTCCGCCCTTaGTTGGTGATGACAGCTCCGTTCTGCTTGATGACC +
Preference number: 6 (lower is better)
Translates to: QASPRSRICFRP*LVMTAPFCLMT
Trigger: GGTCATCAAGCAGAACGGAGCTGTCATCACCAACAAAGGGCGGAAGCAGATCCGAGAGCGCGGGCTAGCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS CAA 90 bp CGGATCTGCTTCCGCCCTTTGTTGGTGATGACAGCTCCGTTCTGCTaGATGACCACCAGCTTGGGGATGGCGGTGATTTCGTACCTCTTC +
Preference number: 6 (lower is better)
Translates to: RICFRPLLVMTAPFC*MTTSLGMAVISYLF
Trigger: GAAGAGGTACGAAATCACCGCCATCCCCAAGCTGGTGGTCATCAAGCAGAACGGAGCTGTCATCACCAACAAAGGGCGGAAGCAGATCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS GCA 72 bp TGCTTCCGCCCTTTGTTGGTGATGACAGCTCCGTTCTaGTTGATGACCACCAGCTTGGGGATGGCGGTGATT +
Preference number: 6 (lower is better)
Translates to: CFRPLLVMTAPF*LMTTSLGMAVI
Trigger: AATCACCGCCATCCCCAAGCTGGTGGTCATCAAGCAGAACGGAGCTGTCATCACCAACAAAGGGCGGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS CAA 72 bp TTCCGCCCTTTGTTGGTGATGACAGCTCCGTTCTGCTaGATGACCACCAGCTTGGGGATGGCGGTGATTTCG +
Preference number: 6 (lower is better)
Translates to: FRPLLVMTAPFC*MTTSLGMAVIS
Trigger: CGAAATCACCGCCATCCCCAAGCTGGTGGTCATCAAGCAGAACGGAGCTGTCATCACCAACAAAGGGCGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS CAA 90 bp CCTTTGTTGGTGATGACAGCTCCGTTCTGCTTGATGACCACCAGCTaGGGGATGGCGGTGATTTCGTACCTCTTCTTCAGTTCATGCCGG +
Preference number: 6 (lower is better)
Translates to: PLLVMTAPFCLMTTS*GMAVISYLFFSSCR
Trigger: CCGGCATGAACTGAAGAAGAGGTACGAAATCACCGCCATCCCCAAGCTGGTGGTCATCAAGCAGAACGGAGCTGTCATCACCAACAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS TCA 72 bp AAGTTTTGGAAAACATCGGCTGCTTCCACCCAGTTCTaGAAGCAAGCTAGCCCGCGCTCTCGGATCTGCTTC +
Preference number: 6 (lower is better)
Translates to: KFWKTSAASTQF*KQASPRSRICF
Trigger: GAAGCAGATCCGAGAGCGCGGGCTAGCTTGCTTTCAGAACTGGGTGGAAGCAGCCGATGTTTTCCAAAACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6
CDS CAA 72 bp GTGATGACAGCTCCGTTCTGCTTGATGACCACCAGCTaGGGGATGGCGGTGATTTCGTACCTCTTCTTCAGT +
Preference number: 6 (lower is better)
Translates to: VMTAPFCLMTTS*GMAVISYLFFS
Trigger: ACTGAAGAAGAGGTACGAAATCACCGCCATCCCCAAGCTGGTGGTCATCAAGCAGAACGGAGCTGTCATCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021828.6