Pregenerated sensors for NXF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057000Ensembl transcript IDs: ENSMUST00000080929.13, ENSMUST00000138878.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTAGTTATGTACCCACAGGTATCTCAATTGATAGTTCCAAACACATaGTCACATAGGTGGCCCTGTTTATCCTCAGTGGGTCACAATGCA | + |
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Preference number: 1 (lower is better) Translates to: LVMYPQVSQLIVPNT*SHRWPCLSSVGHNA Trigger: TGCATTGTGACCCACTGAGGATAAACAGGGCCACCTATGTGACCATGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CCA 90 bp | TCCTACCTTGGAGATCCTCATTCTCATAATACGGGCTTGCACCAGTaGATGTTGAAGGTATTTAACATAACCAGCAACATCAATAGTATC | + |
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Preference number: 1 (lower is better) Translates to: SYLGDPHSHNTGLHQ*MLKVFNITSNINSI Trigger: GATACTATTGATGTTGCTGGTTATGTTAAATACCTTCAACATCCACTGGTGCAAGCCCGTATTATGAGAATGAGGATCTCCAAGGTAGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CAA 90 bp | GTACAGCAGTCCTACCTTGGAGATCCTCATTCTCATAATACGGGCTaGCACCAGTGGATGTTGAAGGTATTTAACATAACCAGCAACATC | + |
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Preference number: 2 (lower is better) Translates to: VQQSYLGDPHSHNTG*HQWMLKVFNITSNI Trigger: GATGTTGCTGGTTATGTTAAATACCTTCAACATCCACTGGTGCAAGCCCGTATTATGAGAATGAGGATCTCCAAGGTAGGACTGCTGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR-3UTR TCA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGAGATGTGACATGGTaGGGGGTGAGAGTGACCAGA | + |
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Preference number: 2 (lower is better) Translates to: LFILSGSQCKTKQVSMRQGDVTW*GVRVTR Trigger: TCTGGTCACTCTCACCCCTCACCATGTCACATCTCC...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR-3UTR GCA 90 bp | CACTGGGCCTGCACAAGACTAAGTCTTTCATTAGTCAACCACAGAGTGAGGGTCCTCAGTGGGTCACAATaGAAAACAAAACAAGTAAGT | + |
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Preference number: 2 (lower is better) Translates to: HWACTRLSLSLVNHRVRVLSGSQ*KTKQVS Trigger: ACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAG...GACCCTCACTCTGTGGTTGACTAATGAAAGACTTAGTCTTGTGCAGGCCCAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CAA 90 bp | CTTGGAGATCCTCATTCTCATAATACGGGCTTGCACCAGTGGATGTaGAAGGTATTTAACATAACCAGCAACATCAATAGTATCTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: LGDPHSHNTGLHQWM*KVFNITSNINSISR Trigger: TCTGGAGATACTATTGATGTTGCTGGTTATGTTAAATACCTTCAACATCCACTGGTGCAAGCCCGTATTATGAGAATGAGGATCTCCAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR-3UTR TCA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAATCTCAGCAGAGGTTTaGAGAAATAAGATAGTGACA | + |
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Preference number: 2 (lower is better) Translates to: LFILSGSQCKTKQVSMRQISAEV*RNKIVT Trigger: TGTCACTATCTTATTTCTTCAAACCTCTGCTGAGAT...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR-3UTR CCA 90 bp | TCACTATCTTTAGTTATGTACCCACAGGTATCTCAATTGATAGTTCCAAACACACCTGTTTATCCTCAGTaGGTCACAATGCAAAACAAA | + |
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Preference number: 2 (lower is better) Translates to: SLSLVMYPQVSQLIVPNTPVYPQ*VTMQNK Trigger: TTTGTTTTGCATTGTGACCCACTGAGGATAAACAGG...TGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAAAGATAGTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CCA 72 bp | TACCCACAGGTATCTCAATTGATAGTTCCAAACACATaGTCACATAGGTGGCCCTGTTTATCCTCAGTGGGT | + |
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Preference number: 3 (lower is better) Translates to: YPQVSQLIVPNT*SHRWPCLSSVG Trigger: ACCCACTGAGGATAAACAGGGCCACCTATGTGACCATGTGTTTGGAACTATCAATTGAGATACCTGTGGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CCA 72 bp | TCTCAATTGATAGTTCCAAACACATGGTCACATAGGTaGCCCTGTTTATCCTCAGTGGGTCACAATGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: SQLIVPNTWSHR*PCLSSVGHNAK Trigger: TTTTGCATTGTGACCCACTGAGGATAAACAGGGCCACCTATGTGACCATGTGTTTGGAACTATCAATTGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CCA 72 bp | GGAGATCCTCATTCTCATAATACGGGCTTGCACCAGTaGATGTTGAAGGTATTTAACATAACCAGCAACATC | + |
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Preference number: 3 (lower is better) Translates to: GDPHSHNTGLHQ*MLKVFNITSNI Trigger: GATGTTGCTGGTTATGTTAAATACCTTCAACATCCACTGGTGCAAGCCCGTATTATGAGAATGAGGATCTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR TCA 72 bp | TCAGTTTTAACAGGGTTAGAAAGGATGTTCAACGTATaGAACTATATAGCCTACAGTAGCAGGACTGTACCC | + |
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Preference number: 3 (lower is better) Translates to: SVLTGLERMFNV*NYIAYSSRTVP Trigger: GGGTACAGTCCTGCTACTGTAGGCTATATAGTTTCATACGTTGAACATCCTTTCTAACCCTGTTAAAACTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CCA 72 bp | ATACCAAGGATTGTTATAGTAAGACAATCATATATATaGGGACTGTCTTTTGTCACAGGCTTTTATGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: IPRIVIVRQSYI*GLSFVTGFYVS Trigger: GGACACATAAAAGCCTGTGACAAAAGACAGTCCCCATATATATGATTGTCTTACTATAACAATCCTTGGTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGCCGGGGCGTGCACCTTaGCCACCTCCCCTTCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKPGRAP*PPPLQS Trigger: ACTCTGAAGGGGAGGTGGCCAAGGTGCACGCCCCGG...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | CACTGGGCCTGCACAAGACTAAGTCTTTCATTAGTCAACCACAGAGTGAGGGTCCGGGTCATCAAATCTTaGTCAAAGGGAAGTCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: HWACTRLSLSLVNHRVRVRVIKS*SKGSLC Trigger: GCAGAGACTTCCCTTTGACCAAGATTTGATGACCCG...GACCCTCACTCTGTGGTTGACTAATGAAAGACTTAGTCTTGTGCAGGCCCAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | CACTGGGCCTGCACAAGACTAAGTCTTTCATTAGTCAACCACAGAGTGAGGGTCGGTCATGTTGAGTTTTaGGCAATGTACGAAGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: HWACTRLSLSLVNHRVRVGHVEF*AMYEGS Trigger: ACTTCCTTCGTACATTGCCCAAAACTCAACATGACC...GACCCTCACTCTGTGGTTGACTAATGAAAGACTTAGTCTTGTGCAGGCCCAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | CACTGGGCCTGCACAAGACTAAGTCTTTCATTAGTCAACCACAGAGTGAGGGTCTGGCTGCTGATAAAATaGAGTATGCACTGTATCACT | + |
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Preference number: 4 (lower is better) Translates to: HWACTRLSLSLVNHRVRVWLLIK*SMHCIT Trigger: AGTGATACAGTGCATACTTCATTTTATCAGCAGCCA...GACCCTCACTCTGTGGTTGACTAATGAAAGACTTAGTCTTGTGCAGGCCCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGAGGGGATGGTCAGTGTaGAGCAAGCCTCAGGATGAT | + |
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Preference number: 4 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKRGWSV*SKPQDD Trigger: ATCATCCTGAGGCTTGCTTCACACTGACCATCCCCT...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | GGTGGCCCTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATTCGTGTCCTCTACCTTaGGCAAAGCAAGGCTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: GGPVYPQWVTMQNKTSKYSCPLP*AKQGFV Trigger: TACAAAGCCTTGCTTTGCTCAAGGTAGAGGACACGA...ATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAGGGCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | CACTGGGCCTGCACAAGACTAAGTCTTTCATTAGTCAACCACAGAGTGAGGGTCTTAAGAAATCTCTGTTaGAAAATACGCCTGCATCTC | + |
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Preference number: 4 (lower is better) Translates to: HWACTRLSLSLVNHRVRVLRNLC*KIRLHL Trigger: GAGATGCAGGCGTATTTTCCAACAGAGATTTCTTAA...GACCCTCACTCTGTGGTTGACTAATGAAAGACTTAGTCTTGTGCAGGCCCAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | GGTGGCCCTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATAAAGGGATGCTGCACTaGCTCTGGATCAAATTCAGC | + |
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Preference number: 4 (lower is better) Translates to: GGPVYPQWVTMQNKTSKYKGMLH*LWIKFS Trigger: GCTGAATTTGATCCAGAGCCAGTGCAGCATCCCTTT...ATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAGGGCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CAA 72 bp | TCCTACCTTGGAGATCCTCATTCTCATAATACGGGCTaGCACCAGTGGATGTTGAAGGTATTTAACATAACC | + |
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Preference number: 4 (lower is better) Translates to: SYLGDPHSHNTG*HQWMLKVFNIT Trigger: GGTTATGTTAAATACCTTCAACATCCACTGGTGCAAGCCCGTATTATGAGAATGAGGATCTCCAAGGTAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAATCTCTCTGGAGGTTTTaGCCCTCCCTCCATGTTAAC | + |
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Preference number: 4 (lower is better) Translates to: LFILSGSQCKTKQVSMRQSLWRF*PSLHVN Trigger: GTTAACATGGAGGGAGGGTCAAAACCTCCAGAGAGA...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAACCACCACAAAGGAGGTaGGGTCATGTTGAGTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: LFILSGSQCKTKQVSMRQPPQRR*GHVEFW Trigger: CCAAAACTCAACATGACCTCACCTCCTTTGTGGTGG...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR GCA 90 bp | GGTGGCCCTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGATAACGGGATGGAATaGCATATGGAGTGTATCTTC | + |
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Preference number: 4 (lower is better) Translates to: GGPVYPQWVTMQNKTSKYDNGME*HMECIF Trigger: GAAGATACACTCCATATGGCATTCCATCCCGTTATC...ATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAGGGCCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR GCA 90 bp | GGTGGCCCTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATTGGTTTGTAGTCAGCTaGAGAATCACAGATGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: GGPVYPQWVTMQNKTSKYWFVVS*RITDGV Trigger: AACTCCATCTGTGATTCTGCAGCTGACTACAAACCA...ATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAGGGCCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGCTGCAGAATCACAGATaGAGTTCTGTGACTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKLQNHR*SSVTLR Trigger: CCTCAGAGTCACAGAACTCCATCTGTGATTCTGCAG...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CAA 72 bp | TGGATCCTTAAATATGTGACAAATACACAGAACAATTaGAGTCGGCTCTACCAGATAGGCTTCAGCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: WILKYVTNTQNN*SRLYQIGFSFQ Trigger: CTGGAAGCTGAAGCCTATCTGGTAGAGCCGACTCAAATTGTTCTGTGTATTTGTCACATATTTAAGGATCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CAA 72 bp | TCACTATCTTTAGTTATGTACCCACAGGTATCTCAATaGATAGTTCCAAACACATGGTCACATAGGTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: SLSLVMYPQVSQ*IVPNTWSHRWP Trigger: GGGCCACCTATGTGACCATGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAAAGATAGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGGAGAGTTGGTTTATGTaGTTCTTGTCCATCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKESWFM*FLSIQA Trigger: AGCCTGGATGGACAAGAATCACATAAACCAACTCTC...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGTGTGAACTTATCCTCTaGGATCGTGTCCTCTACCTT | + |
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Preference number: 4 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKCELIL*DRVLYL Trigger: AAGGTAGAGGACACGATCTCAGAGGATAAGTTCACA...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | TCACTATCTTTAGTTATGTACCCACAGGTATCTCAATTGATAGTTCCAAACACAATGCTGCACTGGCTCTaGATCAAATTCAGCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: SLSLVMYPQVSQLIVPNTMLHWL*IKFSSH Trigger: GTGGCTGCTGAATTTGATCCAGAGCCAGTGCAGCAT...TGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAAAGATAGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | TCACTATCTTTAGTTATGTACCCACAGGTATCTCAATTGATAGTTCCAAACACACTGGGCACAGAATGTTaGCACCATCTCCTGTTGATC | + |
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Preference number: 4 (lower is better) Translates to: SLSLVMYPQVSQLIVPNTLGTEC*HHLLLI Trigger: GATCAACAGGAGATGGTGCCAACATTCTGTGCCCAG...TGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAAAGATAGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAATTGGATCTGTCTGTGTaGACTTATCCTCTGAGATCG | + |
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Preference number: 4 (lower is better) Translates to: LFILSGSQCKTKQVSMRQLDLSV*TYPLRS Trigger: CGATCTCAGAGGATAAGTTCACACAGACAGATCCAA...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR GCA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGTCTTGTTTGTCCCTCTaGATTTTTCTCTCTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKSCLSL*IFLSGG Trigger: ACCTCCAGAGAGAAAAATGCAGAGGGACAAACAAGA...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | GGTGGCCCTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATATGTTAACATCCGTTTaGTTCCATTTCTGTACACTG | + |
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Preference number: 4 (lower is better) Translates to: GGPVYPQWVTMQNKTSKYMLTSV*FHFCTL Trigger: CAGTGTACAGAAATGGAACCAAACGGATGTTAACAT...ATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAGGGCCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| 3UTR CAA 72 bp | CCTCATTCTCATAATACGGGCTTGCACCAGTGGATGTaGAAGGTATTTAACATAACCAGCAACATCAATAGT | + |
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Preference number: 4 (lower is better) Translates to: PHSHNTGLHQWM*KVFNITSNINS Trigger: ACTATTGATGTTGCTGGTTATGTTAAATACCTTCAACATCCACTGGTGCAAGCCCGTATTATGAGAATGAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | TCACTATCTTTAGTTATGTACCCACAGGTATCTCAATTGATAGTTCCAAACACACCTTCAGAGTTCACCTaGGTCATATCCTCTTTATGG | + |
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Preference number: 4 (lower is better) Translates to: SLSLVMYPQVSQLIVPNTPSEFT*VISSLW Trigger: CCATAAAGAGGATATGACCCAGGTGAACTCTGAAGG...TGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAAAGATAGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGGTACTCAGAGAGCTTTaGTCTGCACATATCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKVLREL*SAHIFS Trigger: AGAAAAGATATGTGCAGACCAAAGCTCTCTGAGTAC...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAACTTGAACCAGTTCTCTaGAGTATCATCTTGTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: LFILSGSQCKTKQVSMRQLEPVL*SIILFV Trigger: GACAAACAAGATGATACTTCAGAGAACTGGTTCAAG...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR GCA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAAGCATCTTTTCTGTCTaGAAACATATGTCCACCACA | + |
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Preference number: 4 (lower is better) Translates to: LFILSGSQCKTKQVSMRQSIFSV*KHMSTT Trigger: TGTGGTGGACATATGTTTGCAGACAGAAAAGATGCT...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CCA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAATCTGAACTGTTGTCATaGGTAACAACAAAAATCCGA | + |
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Preference number: 4 (lower is better) Translates to: LFILSGSQCKTKQVSMRQSELLS*VTTKIR Trigger: TCGGATTTTTGTTGTTACCCATGACAACAGTTCAGA...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR TCA 90 bp | TCACTATCTTTAGTTATGTACCCACAGGTATCTCAATTGATAGTTCCAAACACATTGATCTTGAGAGAATaGAGGCAAATAACTGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SLSLVMYPQVSQLIVPNTLILRE*RQITGR Trigger: TCTACCAGTTATTTGCCTTCATTCTCTCAAGATCAA...TGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAAAGATAGTGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CAA 90 bp | GGTGGCCCTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATTCCGGGGCGTGCACCTaGGCCACCTCCCCTTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: GGPVYPQWVTMQNKTSKYSGACT*ATSPSE Trigger: CTCTGAAGGGGAGGTGGCCAAGGTGCACGCCCCGGA...ATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAGGGCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CCA 90 bp | AGATCCGGGGCGTGCACCTTGGCCACCTCCCCTTCAGAGTTCACCTaGGTCATATCCTCTTTATGGATACTCAAGGAAGGAGTCATATAC | + |
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Preference number: 5 (lower is better) Translates to: RSGACTLATSPSEFT*VISSLWILKEGVIY Trigger: GTATATGACTCCTTCCTTGAGTATCCATAAAGAGGATATGACCCAGGTGAACTCTGAAGGGGAGGTGGCCAAGGTGCACGCCCCGGATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CCA 90 bp | TTGGCCACCTCCCCTTCAGAGTTCACCTGGGTCATATCCTCTTTATaGATACTCAAGGAAGGAGTCATATACCTTCTAGGAACCAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: LATSPSEFTWVISSL*ILKEGVIYLLGTSA Trigger: GGCACTGGTTCCTAGAAGGTATATGACTCCTTCCTTGAGTATCCATAAAGAGGATATGACCCAGGTGAACTCTGAAGGGGAGGTGGCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS TCA 90 bp | TCGGGTATGCATGGGAGGATTACTCATGGCTGGCTGCTGATAAAATaGAGTATGCACTGTATCACTGACGTGAGCAGGCGAGTTAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: SGMHGRITHGWLLIK*SMHCITDVSRRVKK Trigger: TTTCTTAACTCGCCTGCTCACGTCAGTGATACAGTGCATACTTCATTTTATCAGCAGCCAGCCATGAGTAATCCTCCCATGCATACCCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080929.13 ENSMUST00000138878.2 |
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| CDS CCA 90 bp | GATAACGGGATGGAATGCCATATGGAGTGTATCTTCGGGTATGCATaGGAGGATTACTCATGGCTGGCTGCTGATAAAATGAAGTATGCA | + |
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Preference number: 5 (lower is better) Translates to: DNGMECHMECIFGYA*EDYSWLAADKMKYA Trigger: TGCATACTTCATTTTATCAGCAGCCAGCCATGAGTAATCCTCCCATGCATACCCGAAGATACACTCCATATGGCATTCCATCCCGTTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080929.13 ENSMUST00000138878.2 |
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| CDS-3UTR CAA 90 bp | CACTGGGCCTGCACAAGACTAAGTCTTTCATTAGTCAACCACAGAGTGAGGGTCACAGACAGCTTGTCATaGATGATACAGAGTTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: HWACTRLSLSLVNHRVRVTDSLS*MIQSSE Trigger: TTCAGAACTCTGTATCATCAATGACAAGCTGTCTGT...GACCCTCACTCTGTGGTTGACTAATGAAAGACTTAGTCTTGTGCAGGCCCAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CAA 90 bp | CACTGGGCCTGCACAAGACTAAGTCTTTCATTAGTCAACCACAGAGTGAGGGTCATCATGAAGGGATTTTaGAGACCTGTCAACATTCAC | + |
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Preference number: 5 (lower is better) Translates to: HWACTRLSLSLVNHRVRVIMKGF*RPVNIH Trigger: GTGAATGTTGACAGGTCTCAAAAATCCCTTCATGAT...GACCCTCACTCTGTGGTTGACTAATGAAAGACTTAGTCTTGTGCAGGCCCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CAA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGATCGTGTCCTCTACCTaGAGCAAAGCAAGGCTTTGT | + |
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Preference number: 5 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKIVSST*SKARLC Trigger: ACAAAGCCTTGCTTTGCTCAAGGTAGAGGACACGAT...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CAA 90 bp | TCACTATCTTTAGTTATGTACCCACAGGTATCTCAATTGATAGTTCCAAACACAATAATGTCACATTTCTaGTGCTTCAGCAGCTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: SLSLVMYPQVSQLIVPNTIMSHF*CFSSCL Trigger: GAGGCAGCTGCTGAAGCACAAGAAATGTGACATTAT...TGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAAAGATAGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CAA 90 bp | GGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAAGGACTTATAGGGAAGATATTTCTGCTAAACTaGAAGTACTCACACAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: GSQCKTKQVSMRQGLIGKIFLLN*KYSHKL Trigger: CAGCTTGTGTGAGTACTTCAAGTTTAGCAGAAATAT...CTTCCCTATAAGTCCTTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CAA 90 bp | CTGTTTATCCTCAGTGGGTCACAATGCAAAACAAAACAAGTAAGTATGAGACAATTAGTCACAGACAGCTaGTCATTGATGATACAGAGT | + |
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Preference number: 5 (lower is better) Translates to: LFILSGSQCKTKQVSMRQLVTDS*SLMIQS Trigger: ACTCTGTATCATCAATGACAAGCTGTCTGTGACTAA...TTGTCTCATACTTACTTGTTTTGTTTTGCATTGTGACCCACTGAGGATAAACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS-3UTR CAA 90 bp | TCACTATCTTTAGTTATGTACCCACAGGTATCTCAATTGATAGTTCCAAACACAGTTAAGAAATCTCTGTaGGAAAATACGCCTGCATCT | + |
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Preference number: 5 (lower is better) Translates to: SLSLVMYPQVSQLIVPNTVKKSL*ENTPAS Trigger: AGATGCAGGCGTATTTTCCAACAGAGATTTCTTAAC...TGTGTTTGGAACTATCAATTGAGATACCTGTGGGTACATAACTAAAGATAGTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CCA 72 bp | GCGTGCACCTTGGCCACCTCCCCTTCAGAGTTCACCTaGGTCATATCCTCTTTATGGATACTCAAGGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: ACTLATSPSEFT*VISSLWILKEG Trigger: TCCTTCCTTGAGTATCCATAAAGAGGATATGACCCAGGTGAACTCTGAAGGGGAGGTGGCCAAGGTGCACGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CAA 90 bp | GGGGTGGAGGCACTGGGAACCTCGTGGACATTAGTCACAGACAGCTaGTCATTGATGATACAGAGTTCTGAACTGTTGTCATGGGTAACA | + |
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Preference number: 6 (lower is better) Translates to: GVEALGTSWTLVTDS*SLMIQSSELLSWVT Trigger: TGTTACCCATGACAACAGTTCAGAACTCTGTATCATCAATGACAAGCTGTCTGTGACTAATGTCCACGAGGTTCCCAGTGCCTCCACCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CAA 72 bp | AACAACAAAAATCCGAGTGAAGGCATGCATGCACCCTaGAGCGCTGTTGTCCACTTCCTTGAACAACCCACT | + |
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Preference number: 6 (lower is better) Translates to: NNKNPSEGMHAP*SAVVHFLEQPT Trigger: AGTGGGTTGTTCAAGGAAGTGGACAACAGCGCTCAAGGGTGCATGCATGCCTTCACTCGGATTTTTGTTGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS TCA 72 bp | GAATGTTGGCACCATCTCCTGTTGATCTTGAGAGAATaGAGGCAAATAACTGGTAGACGATGTGGCCACAGG | + |
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Preference number: 6 (lower is better) Translates to: ECWHHLLLILRE*RQITGRRCGHR Trigger: CCTGTGGCCACATCGTCTACCAGTTATTTGCCTTCATTCTCTCAAGATCAACAGGAGATGGTGCCAACATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CAA 72 bp | CTGCCGGTTAAGAACTCGCTGAGAAGTAGCACATTGTaGGTTTGTAGTCAGCTGCAGAATCACAGATGGAGT | + |
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Preference number: 6 (lower is better) Translates to: LPVKNSLRSSTL*VCSQLQNHRWS Trigger: ACTCCATCTGTGATTCTGCAGCTGACTACAAACCAACAATGTGCTACTTCTCAGCGAGTTCTTAACCGGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS TCA 72 bp | TTAGGATCTTGGATCTGTCTGTGTGAACTTATCCTCTaGGATCGTGTCCTCTACCTTGAGCAAAGCAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: LGSWICLCELIL*DRVLYLEQSKA Trigger: AGCCTTGCTTTGCTCAAGGTAGAGGACACGATCTCAGAGGATAAGTTCACACAGACAGATCCAAGATCCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CCA 72 bp | ATGGAATGCCATATGGAGTGTATCTTCGGGTATGCATaGGAGGATTACTCATGGCTGGCTGCTGATAAAATG | + |
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Preference number: 6 (lower is better) Translates to: MECHMECIFGYA*EDYSWLAADKM Trigger: CATTTTATCAGCAGCCAGCCATGAGTAATCCTCCCATGCATACCCGAAGATACACTCCATATGGCATTCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080929.13 ENSMUST00000138878.2 |
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| CDS CAA 72 bp | GCACTGGGAACCTCGTGGACATTAGTCACAGACAGCTaGTCATTGATGATACAGAGTTCTGAACTGTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: ALGTSWTLVTDS*SLMIQSSELLS Trigger: TGACAACAGTTCAGAACTCTGTATCATCAATGACAAGCTGTCTGTGACTAATGTCCACGAGGTTCCCAGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CCA 72 bp | TCCCCTTCAGAGTTCACCTGGGTCATATCCTCTTTATaGATACTCAAGGAAGGAGTCATATACCTTCTAGGA | + |
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Preference number: 6 (lower is better) Translates to: SPSEFTWVISSL*ILKEGVIYLLG Trigger: TCCTAGAAGGTATATGACTCCTTCCTTGAGTATCCATAAAGAGGATATGACCCAGGTGAACTCTGAAGGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CAA 72 bp | ATCACTGACGTGAGCAGGCGAGTTAAGAAATCTCTGTaGGAAAATACGCCTGCATCTCATTCTTCTTCGCAA | + |
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Preference number: 6 (lower is better) Translates to: ITDVSRRVKKSL*ENTPASHSSSQ Trigger: TTGCGAAGAAGAATGAGATGCAGGCGTATTTTCCAACAGAGATTTCTTAACTCGCCTGCTCACGTCAGTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS CCA 72 bp | ACATTGTTGGTTTGTAGTCAGCTGCAGAATCACAGATaGAGTTCTGTGACTCTGAGGCTTATTATCAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: TLLVCSQLQNHR*SSVTLRLIISL Trigger: GAGACTGATAATAAGCCTCAGAGTCACAGAACTCCATCTGTGATTCTGCAGCTGACTACAAACCAACAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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| CDS TCA 72 bp | AGTCACAGACAGCTTGTCATTGATGATACAGAGTTCTaGACTGTTGTCATGGGTAACAACAAAAATCCGAGT | + |
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Preference number: 6 (lower is better) Translates to: SHRQLVIDDTEF*TVVMGNNKNPS Trigger: ACTCGGATTTTTGTTGTTACCCATGACAACAGTTCAGAACTCTGTATCATCAATGACAAGCTGTCTGTGACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080929.13 |
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